data_3TO9 # _model_server_result.job_id dNCvC0iaxVmCICq1OoPMKg _model_server_result.datetime_utc '2025-03-05 04:12:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3to9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 3TO9 # _exptl.entry_id 3TO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TO9 _cell.length_a 182.47 _cell.length_b 182.47 _cell.length_c 182.47 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 102 A HIS 261 1_555 A N ALY 103 A ALY 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C ALY 103 A ALY 262 1_555 A N THR 104 A THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 208 n n C1 C2 EDO sing 209 n n C1 H11 EDO sing 210 n n C1 H12 EDO sing 211 n n O1 HO1 EDO sing 212 n n C2 O2 EDO sing 213 n n C2 H21 EDO sing 214 n n C2 H22 EDO sing 215 n n O2 HO2 EDO sing 216 n n # _atom_sites.entry_id 3TO9 _atom_sites.fract_transf_matrix[1][1] 0.00548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 500 500 COA COA . C 3 EDO A 1 506 506 EDO EDO . D 3 EDO A 1 507 507 EDO EDO . E 4 SO4 A 1 508 508 SO4 SO4 . F 4 SO4 A 1 509 509 SO4 SO4 . G 3 EDO A 1 501 501 EDO EDO . H 5 CAD A 1 502 502 CAD CAD . I 6 HOH A 1 1 1 HOH HOH . I 6 HOH A 2 2 2 HOH HOH . I 6 HOH A 3 3 3 HOH HOH . I 6 HOH A 4 4 4 HOH HOH . I 6 HOH A 5 5 5 HOH HOH . I 6 HOH A 6 6 6 HOH HOH . I 6 HOH A 7 7 7 HOH HOH . I 6 HOH A 8 8 8 HOH HOH . I 6 HOH A 9 9 9 HOH HOH . I 6 HOH A 10 10 10 HOH HOH . I 6 HOH A 11 11 11 HOH HOH . I 6 HOH A 12 12 12 HOH HOH . I 6 HOH A 13 13 13 HOH HOH . I 6 HOH A 14 14 14 HOH HOH . I 6 HOH A 15 15 15 HOH HOH . I 6 HOH A 16 16 16 HOH HOH . I 6 HOH A 17 17 17 HOH HOH . I 6 HOH A 18 18 18 HOH HOH . I 6 HOH A 19 19 19 HOH HOH . I 6 HOH A 20 20 20 HOH HOH . I 6 HOH A 21 21 21 HOH HOH . I 6 HOH A 22 22 22 HOH HOH . I 6 HOH A 23 23 23 HOH HOH . I 6 HOH A 24 24 24 HOH HOH . I 6 HOH A 25 25 25 HOH HOH . I 6 HOH A 26 26 26 HOH HOH . I 6 HOH A 27 27 27 HOH HOH . I 6 HOH A 28 28 28 HOH HOH . I 6 HOH A 29 29 29 HOH HOH . I 6 HOH A 30 30 30 HOH HOH . I 6 HOH A 31 31 31 HOH HOH . I 6 HOH A 32 32 32 HOH HOH . I 6 HOH A 33 33 33 HOH HOH . I 6 HOH A 34 34 34 HOH HOH . I 6 HOH A 35 35 35 HOH HOH . I 6 HOH A 36 36 36 HOH HOH . I 6 HOH A 37 37 37 HOH HOH . I 6 HOH A 38 38 38 HOH HOH . I 6 HOH A 39 39 39 HOH HOH . I 6 HOH A 40 40 40 HOH HOH . I 6 HOH A 41 41 41 HOH HOH . I 6 HOH A 42 42 42 HOH HOH . I 6 HOH A 43 43 43 HOH HOH . I 6 HOH A 44 44 44 HOH HOH . I 6 HOH A 45 46 46 HOH HOH . I 6 HOH A 46 47 47 HOH HOH . I 6 HOH A 47 48 48 HOH HOH . I 6 HOH A 48 49 49 HOH HOH . I 6 HOH A 49 50 50 HOH HOH . I 6 HOH A 50 51 51 HOH HOH . I 6 HOH A 51 52 52 HOH HOH . I 6 HOH A 52 53 53 HOH HOH . I 6 HOH A 53 54 54 HOH HOH . I 6 HOH A 54 55 55 HOH HOH . I 6 HOH A 55 56 56 HOH HOH . I 6 HOH A 56 57 57 HOH HOH . I 6 HOH A 57 58 58 HOH HOH . I 6 HOH A 58 59 59 HOH HOH . I 6 HOH A 59 60 60 HOH HOH . I 6 HOH A 60 62 62 HOH HOH . I 6 HOH A 61 63 63 HOH HOH . I 6 HOH A 62 64 64 HOH HOH . I 6 HOH A 63 65 65 HOH HOH . I 6 HOH A 64 66 66 HOH HOH . I 6 HOH A 65 67 67 HOH HOH . I 6 HOH A 66 68 68 HOH HOH . I 6 HOH A 67 69 69 HOH HOH . I 6 HOH A 68 70 70 HOH HOH . I 6 HOH A 69 71 71 HOH HOH . I 6 HOH A 70 72 72 HOH HOH . I 6 HOH A 71 73 73 HOH HOH . I 6 HOH A 72 74 74 HOH HOH . I 6 HOH A 73 75 75 HOH HOH . I 6 HOH A 74 76 76 HOH HOH . I 6 HOH A 75 77 77 HOH HOH . I 6 HOH A 76 78 78 HOH HOH . I 6 HOH A 77 79 79 HOH HOH . I 6 HOH A 78 80 80 HOH HOH . I 6 HOH A 79 81 81 HOH HOH . I 6 HOH A 80 84 84 HOH HOH . I 6 HOH A 81 85 85 HOH HOH . I 6 HOH A 82 87 87 HOH HOH . I 6 HOH A 83 88 88 HOH HOH . I 6 HOH A 84 89 89 HOH HOH . I 6 HOH A 85 90 90 HOH HOH . I 6 HOH A 86 92 92 HOH HOH . I 6 HOH A 87 93 93 HOH HOH . I 6 HOH A 88 94 94 HOH HOH . I 6 HOH A 89 95 95 HOH HOH . I 6 HOH A 90 96 96 HOH HOH . I 6 HOH A 91 97 97 HOH HOH . I 6 HOH A 92 98 98 HOH HOH . I 6 HOH A 93 99 99 HOH HOH . I 6 HOH A 94 100 100 HOH HOH . I 6 HOH A 95 101 101 HOH HOH . I 6 HOH A 96 102 102 HOH HOH . I 6 HOH A 97 104 104 HOH HOH . I 6 HOH A 98 105 105 HOH HOH . I 6 HOH A 99 106 106 HOH HOH . I 6 HOH A 100 107 107 HOH HOH . I 6 HOH A 101 108 108 HOH HOH . I 6 HOH A 102 109 109 HOH HOH . I 6 HOH A 103 110 110 HOH HOH . I 6 HOH A 104 111 111 HOH HOH . I 6 HOH A 105 112 112 HOH HOH . I 6 HOH A 106 113 113 HOH HOH . I 6 HOH A 107 115 115 HOH HOH . I 6 HOH A 108 116 116 HOH HOH . I 6 HOH A 109 117 117 HOH HOH . I 6 HOH A 110 118 118 HOH HOH . I 6 HOH A 111 119 119 HOH HOH . I 6 HOH A 112 121 121 HOH HOH . I 6 HOH A 113 122 122 HOH HOH . I 6 HOH A 114 123 123 HOH HOH . I 6 HOH A 115 124 124 HOH HOH . I 6 HOH A 116 125 125 HOH HOH . I 6 HOH A 117 126 126 HOH HOH . I 6 HOH A 118 128 128 HOH HOH . I 6 HOH A 119 129 129 HOH HOH . I 6 HOH A 120 130 130 HOH HOH . I 6 HOH A 121 132 132 HOH HOH . I 6 HOH A 122 133 133 HOH HOH . I 6 HOH A 123 134 134 HOH HOH . I 6 HOH A 124 135 135 HOH HOH . I 6 HOH A 125 136 136 HOH HOH . I 6 HOH A 126 137 137 HOH HOH . I 6 HOH A 127 139 139 HOH HOH . I 6 HOH A 128 141 141 HOH HOH . I 6 HOH A 129 143 143 HOH HOH . I 6 HOH A 130 144 144 HOH HOH . I 6 HOH A 131 145 145 HOH HOH . I 6 HOH A 132 146 146 HOH HOH . I 6 HOH A 133 147 147 HOH HOH . I 6 HOH A 134 149 149 HOH HOH . I 6 HOH A 135 151 151 HOH HOH . I 6 HOH A 136 152 152 HOH HOH . I 6 HOH A 137 154 154 HOH HOH . I 6 HOH A 138 155 155 HOH HOH . I 6 HOH A 139 156 156 HOH HOH . I 6 HOH A 140 436 160 HOH HOH . I 6 HOH A 141 437 161 HOH HOH . I 6 HOH A 142 438 162 HOH HOH . I 6 HOH A 143 439 165 HOH HOH . I 6 HOH A 144 440 166 HOH HOH . I 6 HOH A 145 441 168 HOH HOH . I 6 HOH A 146 442 170 HOH HOH . I 6 HOH A 147 443 171 HOH HOH . I 6 HOH A 148 444 172 HOH HOH . I 6 HOH A 149 445 174 HOH HOH . I 6 HOH A 150 446 176 HOH HOH . I 6 HOH A 151 447 177 HOH HOH . I 6 HOH A 152 448 178 HOH HOH . I 6 HOH A 153 449 180 HOH HOH . I 6 HOH A 154 450 182 HOH HOH . I 6 HOH A 155 451 184 HOH HOH . I 6 HOH A 156 452 192 HOH HOH . I 6 HOH A 157 453 193 HOH HOH . I 6 HOH A 158 454 195 HOH HOH . I 6 HOH A 159 455 199 HOH HOH . I 6 HOH A 160 456 202 HOH HOH . I 6 HOH A 161 457 209 HOH HOH . I 6 HOH A 162 458 211 HOH HOH . I 6 HOH A 163 459 213 HOH HOH . I 6 HOH A 164 460 215 HOH HOH . I 6 HOH A 165 461 216 HOH HOH . I 6 HOH A 166 462 218 HOH HOH . I 6 HOH A 167 463 222 HOH HOH . I 6 HOH A 168 464 226 HOH HOH . I 6 HOH A 169 465 229 HOH HOH . I 6 HOH A 170 466 231 HOH HOH . I 6 HOH A 171 467 258 HOH HOH . I 6 HOH A 172 468 259 HOH HOH . I 6 HOH A 173 469 260 HOH HOH . I 6 HOH A 174 470 261 HOH HOH . I 6 HOH A 175 471 263 HOH HOH . I 6 HOH A 176 472 265 HOH HOH . I 6 HOH A 177 473 266 HOH HOH . I 6 HOH A 178 474 268 HOH HOH . I 6 HOH A 179 475 269 HOH HOH . I 6 HOH A 180 476 270 HOH HOH . I 6 HOH A 181 477 271 HOH HOH . I 6 HOH A 182 478 273 HOH HOH . I 6 HOH A 183 479 274 HOH HOH . I 6 HOH A 184 480 275 HOH HOH . I 6 HOH A 185 481 276 HOH HOH . I 6 HOH A 186 482 278 HOH HOH . I 6 HOH A 187 483 279 HOH HOH . I 6 HOH A 188 484 280 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 18.475 -17.195 22.913 1 30.98 ? C1 EDO 501 A 1 HETATM 2 O O1 EDO . . . G 3 19.047 -16.527 21.775 1 31.43 ? O1 EDO 501 A 1 HETATM 3 C C2 EDO . . . G 3 17.045 -17.392 22.494 1 31.16 ? C2 EDO 501 A 1 HETATM 4 O O2 EDO . . . G 3 17.14 -17.446 21.06 1 33.11 ? O2 EDO 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #