data_3TOF # _model_server_result.job_id j0qgzE4z5_X8M95Oy5vdeA _model_server_result.datetime_utc '2024-11-13 07:06:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 3TOF # _exptl.entry_id 3TOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 516.628 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-N-((1R,2S)-1-((2R,3R)-3-benzyloxiran-2-yl)-1-hydroxy-3-phenylpropan-2-yl)-3-methyl-2-(2-phenoxyacetamido)butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TOF _cell.length_a 51.294 _cell.length_b 58.392 _cell.length_c 61.026 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H36 N2 O5' _chem_comp.formula_weight 516.628 _chem_comp.id 076 _chem_comp.mon_nstd_flag . _chem_comp.name (S)-N-((1R,2S)-1-((2R,3R)-3-benzyloxiran-2-yl)-1-hydroxy-3-phenylpropan-2-yl)-3-methyl-2-(2-phenoxyacetamido)butanamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C30 076 doub 1 n y C29 C28 076 sing 2 n y C30 C31 076 sing 3 n y C28 C27 076 doub 4 n y C31 C26 076 doub 5 n y C27 C26 076 sing 6 n y C26 C25 076 sing 7 n n O5 C24 076 sing 8 n n O5 C23 076 sing 9 n n C25 C24 076 sing 10 n n C24 C23 076 sing 11 n n O3 C13 076 doub 12 n n C23 C22 076 sing 13 n n C18 C17 076 doub 14 n y C18 C19 076 sing 15 n y C17 C16 076 sing 16 n y C7 C8 076 doub 17 n y C7 C6 076 sing 18 n y C12 C10 076 sing 19 n n C8 C3 076 sing 20 n y C13 N2 076 sing 21 n n C13 C9 076 sing 22 n n C22 C14 076 sing 23 n n C22 O4 076 sing 24 n n C14 N2 076 sing 25 n n C14 C15 076 sing 26 n n C10 C9 076 sing 27 n n C10 C11 076 sing 28 n n C19 C20 076 doub 29 n y C6 C5 076 doub 30 n y C16 C15 076 sing 31 n n C16 C21 076 doub 32 n y C9 N1 076 sing 33 n n N1 C1 076 sing 34 n n C3 O2 076 sing 35 n n C3 C4 076 doub 36 n y O2 C2 076 sing 37 n n C20 C21 076 sing 38 n y C5 C4 076 sing 39 n y C1 C2 076 sing 40 n n C1 O1 076 doub 41 n n C27 H1 076 sing 42 n n C28 H2 076 sing 43 n n C29 H3 076 sing 44 n n C30 H4 076 sing 45 n n C31 H5 076 sing 46 n n C25 H6 076 sing 47 n n C25 H7 076 sing 48 n n C24 H8 076 sing 49 n n C23 H9 076 sing 50 n n C22 H10 076 sing 51 n n O4 H11 076 sing 52 n n C14 H12 076 sing 53 n n C15 H13 076 sing 54 n n C15 H14 076 sing 55 n n C17 H15 076 sing 56 n n C18 H16 076 sing 57 n n C19 H17 076 sing 58 n n C20 H18 076 sing 59 n n C21 H19 076 sing 60 n n N2 H20 076 sing 61 n n C9 H21 076 sing 62 n n C10 H22 076 sing 63 n n C12 H23 076 sing 64 n n C12 H24 076 sing 65 n n C12 H25 076 sing 66 n n C11 H26 076 sing 67 n n C11 H27 076 sing 68 n n C11 H28 076 sing 69 n n N1 H29 076 sing 70 n n C2 H30 076 sing 71 n n C2 H31 076 sing 72 n n C4 H32 076 sing 73 n n C5 H33 076 sing 74 n n C6 H34 076 sing 75 n n C7 H35 076 sing 76 n n C8 H36 076 sing 77 n n # _atom_sites.entry_id 3TOF _atom_sites.fract_transf_matrix[1][1] 0.019495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 076 A 1 100 1 076 EPR . D 3 ACT A 1 101 2 ACT ACT . E 4 DMS A 1 102 2 DMS DMS . F 3 ACT B 1 100 1 ACT ACT . G 4 DMS B 1 101 1 DMS DMS . H 5 HOH A 1 103 103 HOH HOH . H 5 HOH A 2 104 104 HOH HOH . H 5 HOH A 3 105 105 HOH HOH . H 5 HOH A 4 106 106 HOH HOH . H 5 HOH A 5 107 107 HOH HOH . H 5 HOH A 6 108 108 HOH HOH . H 5 HOH A 7 109 109 HOH HOH . H 5 HOH A 8 110 110 HOH HOH . H 5 HOH A 9 111 111 HOH HOH . H 5 HOH A 10 112 112 HOH HOH . H 5 HOH A 11 113 2 HOH HOH . H 5 HOH A 12 114 3 HOH HOH . H 5 HOH A 13 115 5 HOH HOH . H 5 HOH A 14 116 6 HOH HOH . H 5 HOH A 15 117 117 HOH HOH . H 5 HOH A 16 118 8 HOH HOH . H 5 HOH A 17 119 12 HOH HOH . H 5 HOH A 18 120 120 HOH HOH . H 5 HOH A 19 121 121 HOH HOH . H 5 HOH A 20 122 17 HOH HOH . H 5 HOH A 21 123 18 HOH HOH . H 5 HOH A 22 124 124 HOH HOH . H 5 HOH A 23 125 125 HOH HOH . H 5 HOH A 24 126 126 HOH HOH . H 5 HOH A 25 127 20 HOH HOH . H 5 HOH A 26 128 21 HOH HOH . H 5 HOH A 27 129 23 HOH HOH . H 5 HOH A 28 130 26 HOH HOH . H 5 HOH A 29 131 131 HOH HOH . H 5 HOH A 30 132 28 HOH HOH . H 5 HOH A 31 133 133 HOH HOH . H 5 HOH A 32 134 34 HOH HOH . H 5 HOH A 33 135 35 HOH HOH . H 5 HOH A 34 136 36 HOH HOH . H 5 HOH A 35 137 38 HOH HOH . H 5 HOH A 36 138 138 HOH HOH . H 5 HOH A 37 139 42 HOH HOH . H 5 HOH A 38 140 43 HOH HOH . H 5 HOH A 39 141 44 HOH HOH . H 5 HOH A 40 142 45 HOH HOH . H 5 HOH A 41 143 49 HOH HOH . H 5 HOH A 42 144 50 HOH HOH . H 5 HOH A 43 145 51 HOH HOH . H 5 HOH A 44 146 54 HOH HOH . H 5 HOH A 45 147 56 HOH HOH . H 5 HOH A 46 148 57 HOH HOH . H 5 HOH A 47 149 149 HOH HOH . H 5 HOH A 48 150 62 HOH HOH . H 5 HOH A 49 151 65 HOH HOH . H 5 HOH A 50 152 66 HOH HOH . H 5 HOH A 51 154 67 HOH HOH . H 5 HOH A 52 155 69 HOH HOH . H 5 HOH A 53 156 71 HOH HOH . H 5 HOH A 54 157 74 HOH HOH . H 5 HOH A 55 158 158 HOH HOH . H 5 HOH A 56 159 78 HOH HOH . H 5 HOH A 57 160 79 HOH HOH . H 5 HOH A 58 161 80 HOH HOH . H 5 HOH A 59 162 81 HOH HOH . H 5 HOH A 60 163 83 HOH HOH . H 5 HOH A 61 164 84 HOH HOH . H 5 HOH A 62 165 165 HOH HOH . H 5 HOH A 63 166 166 HOH HOH . H 5 HOH A 64 167 167 HOH HOH . H 5 HOH A 65 168 168 HOH HOH . H 5 HOH A 66 169 85 HOH HOH . H 5 HOH A 67 170 86 HOH HOH . H 5 HOH A 68 171 171 HOH HOH . H 5 HOH A 69 172 87 HOH HOH . H 5 HOH A 70 173 88 HOH HOH . H 5 HOH A 71 174 174 HOH HOH . H 5 HOH A 72 175 89 HOH HOH . H 5 HOH A 73 176 93 HOH HOH . H 5 HOH A 74 177 177 HOH HOH . H 5 HOH A 75 178 96 HOH HOH . H 5 HOH A 76 179 99 HOH HOH . H 5 HOH A 77 180 102 HOH HOH . H 5 HOH A 78 181 181 HOH HOH . H 5 HOH A 79 206 206 HOH HOH . H 5 HOH A 80 214 214 HOH HOH . H 5 HOH A 81 215 215 HOH HOH . H 5 HOH A 82 216 216 HOH HOH . H 5 HOH A 83 218 218 HOH HOH . H 5 HOH A 84 221 221 HOH HOH . H 5 HOH A 85 222 222 HOH HOH . H 5 HOH A 86 223 223 HOH HOH . H 5 HOH A 87 224 224 HOH HOH . H 5 HOH A 88 225 225 HOH HOH . H 5 HOH A 89 230 230 HOH HOH . H 5 HOH A 90 233 233 HOH HOH . H 5 HOH A 91 234 234 HOH HOH . H 5 HOH A 92 236 236 HOH HOH . H 5 HOH A 93 238 238 HOH HOH . H 5 HOH A 94 239 239 HOH HOH . H 5 HOH A 95 241 241 HOH HOH . I 5 HOH B 1 102 1 HOH HOH . I 5 HOH B 2 103 7 HOH HOH . I 5 HOH B 3 104 9 HOH HOH . I 5 HOH B 4 105 10 HOH HOH . I 5 HOH B 5 106 11 HOH HOH . I 5 HOH B 6 107 13 HOH HOH . I 5 HOH B 7 108 14 HOH HOH . I 5 HOH B 8 109 15 HOH HOH . I 5 HOH B 9 110 16 HOH HOH . I 5 HOH B 10 111 22 HOH HOH . I 5 HOH B 11 112 24 HOH HOH . I 5 HOH B 12 113 113 HOH HOH . I 5 HOH B 13 114 114 HOH HOH . I 5 HOH B 14 115 25 HOH HOH . I 5 HOH B 15 116 27 HOH HOH . I 5 HOH B 16 117 29 HOH HOH . I 5 HOH B 17 118 30 HOH HOH . I 5 HOH B 18 119 31 HOH HOH . I 5 HOH B 19 120 32 HOH HOH . I 5 HOH B 20 121 33 HOH HOH . I 5 HOH B 21 122 122 HOH HOH . I 5 HOH B 22 123 37 HOH HOH . I 5 HOH B 23 124 39 HOH HOH . I 5 HOH B 24 125 40 HOH HOH . I 5 HOH B 25 126 41 HOH HOH . I 5 HOH B 26 127 127 HOH HOH . I 5 HOH B 27 128 46 HOH HOH . I 5 HOH B 28 129 129 HOH HOH . I 5 HOH B 29 130 47 HOH HOH . I 5 HOH B 30 131 48 HOH HOH . I 5 HOH B 31 132 52 HOH HOH . I 5 HOH B 32 133 53 HOH HOH . I 5 HOH B 33 134 55 HOH HOH . I 5 HOH B 34 135 135 HOH HOH . I 5 HOH B 35 136 136 HOH HOH . I 5 HOH B 36 137 58 HOH HOH . I 5 HOH B 37 138 59 HOH HOH . I 5 HOH B 38 139 60 HOH HOH . I 5 HOH B 39 140 140 HOH HOH . I 5 HOH B 40 141 141 HOH HOH . I 5 HOH B 41 142 61 HOH HOH . I 5 HOH B 42 143 143 HOH HOH . I 5 HOH B 43 144 144 HOH HOH . I 5 HOH B 44 145 63 HOH HOH . I 5 HOH B 45 146 146 HOH HOH . I 5 HOH B 46 147 68 HOH HOH . I 5 HOH B 47 148 148 HOH HOH . I 5 HOH B 48 149 70 HOH HOH . I 5 HOH B 49 150 72 HOH HOH . I 5 HOH B 50 151 151 HOH HOH . I 5 HOH B 51 152 73 HOH HOH . I 5 HOH B 52 153 153 HOH HOH . I 5 HOH B 53 154 76 HOH HOH . I 5 HOH B 54 155 155 HOH HOH . I 5 HOH B 55 156 156 HOH HOH . I 5 HOH B 56 157 82 HOH HOH . I 5 HOH B 57 158 90 HOH HOH . I 5 HOH B 58 159 91 HOH HOH . I 5 HOH B 59 160 160 HOH HOH . I 5 HOH B 60 161 92 HOH HOH . I 5 HOH B 61 162 94 HOH HOH . I 5 HOH B 62 163 163 HOH HOH . I 5 HOH B 63 164 95 HOH HOH . I 5 HOH B 64 165 98 HOH HOH . I 5 HOH B 65 166 100 HOH HOH . I 5 HOH B 66 167 75 HOH HOH . I 5 HOH B 67 173 173 HOH HOH . I 5 HOH B 68 175 175 HOH HOH . I 5 HOH B 69 176 176 HOH HOH . I 5 HOH B 70 178 178 HOH HOH . I 5 HOH B 71 183 183 HOH HOH . I 5 HOH B 72 193 193 HOH HOH . I 5 HOH B 73 203 203 HOH HOH . I 5 HOH B 74 213 213 HOH HOH . I 5 HOH B 75 217 217 HOH HOH . I 5 HOH B 76 219 219 HOH HOH . I 5 HOH B 77 226 226 HOH HOH . I 5 HOH B 78 231 231 HOH HOH . I 5 HOH B 79 232 232 HOH HOH . I 5 HOH B 80 235 235 HOH HOH . I 5 HOH B 81 237 237 HOH HOH . I 5 HOH B 82 240 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 076 . . . C 2 19.162 35.727 17.961 1 17.1 ? C1 076 100 A 1 HETATM 2 O O1 076 . . . C 2 18.809 35.098 18.962 1 17.69 ? O1 076 100 A 1 HETATM 3 C C2 076 . . . C 2 19.907 37.027 18.263 1 18.65 ? C2 076 100 A 1 HETATM 4 O O2 076 . . . C 2 20.19 37.599 16.923 1 22.15 ? O2 076 100 A 1 HETATM 5 C C3 076 . . . C 2 21.217 38.49 16.733 1 24.58 ? C3 076 100 A 1 HETATM 6 C C4 076 . . . C 2 22.018 38.923 17.804 1 24.98 ? C4 076 100 A 1 HETATM 7 C C5 076 . . . C 2 23.069 39.841 17.542 1 25.6 ? C5 076 100 A 1 HETATM 8 C C6 076 . . . C 2 23.284 40.307 16.232 1 25.4 ? C6 076 100 A 1 HETATM 9 C C7 076 . . . C 2 22.478 39.85 15.18 1 25.31 ? C7 076 100 A 1 HETATM 10 C C8 076 . . . C 2 21.446 38.953 15.427 1 25.61 ? C8 076 100 A 1 HETATM 11 N N1 076 . . . C 2 18.93 35.317 16.677 1 16.97 ? N1 076 100 A 1 HETATM 12 C C9 076 . . . C 2 18.276 34.004 16.407 1 15.96 ? C9 076 100 A 1 HETATM 13 C C13 076 . . . C 2 19.341 33.168 15.581 1 17.44 ? C13 076 100 A 1 HETATM 14 O O3 076 . . . C 2 19.533 33.334 14.359 1 17.71 ? O3 076 100 A 1 HETATM 15 C C10 076 . . . C 2 16.879 34.133 15.756 1 16.93 ? C10 076 100 A 1 HETATM 16 C C11 076 . . . C 2 16.4 32.674 15.379 1 17.98 ? C11 076 100 A 1 HETATM 17 C C12 076 . . . C 2 15.887 34.828 16.732 1 16.13 ? C12 076 100 A 1 HETATM 18 C C27 076 . . . C 2 18.285 26.337 11.839 1 21.23 ? C27 076 100 A 1 HETATM 19 C C28 076 . . . C 2 18.22 25.987 10.485 1 23.98 ? C28 076 100 A 1 HETATM 20 C C29 076 . . . C 2 18.015 27.003 9.551 1 24.4 ? C29 076 100 A 1 HETATM 21 C C30 076 . . . C 2 17.898 28.332 9.966 1 20.41 ? C30 076 100 A 1 HETATM 22 C C31 076 . . . C 2 17.927 28.7 11.307 1 18.56 ? C31 076 100 A 1 HETATM 23 C C26 076 . . . C 2 18.147 27.675 12.236 1 15.91 ? C26 076 100 A 1 HETATM 24 C C25 076 . . . C 2 18.202 28.034 13.71 1 21.48 ? C25 076 100 A 1 HETATM 25 C C24 076 . . . C 2 19.539 28.442 13.973 1 18.16 ? C24 076 100 A 1 HETATM 26 O O5 076 . . . C 2 19.857 29.71 13.352 1 22.5 ? O5 076 100 A 1 HETATM 27 C C23 076 . . . C 2 19.612 29.69 14.794 1 16.2 ? C23 076 100 A 1 HETATM 28 C C22 076 . . . C 2 20.859 29.905 15.596 1 16.7 ? C22 076 100 A 1 HETATM 29 O O4 076 . . . C 2 20.595 29.448 16.959 1 16.99 ? O4 076 100 A 1 HETATM 30 C C14 076 . . . C 2 21.151 31.423 15.657 1 16.41 ? C14 076 100 A 1 HETATM 31 C C15 076 . . . C 2 22.444 31.737 16.478 1 16.91 ? C15 076 100 A 1 HETATM 32 C C16 076 . . . C 2 22.835 33.183 16.232 1 16.36 ? C16 076 100 A 1 HETATM 33 C C17 076 . . . C 2 23.336 33.669 14.993 1 16.42 ? C17 076 100 A 1 HETATM 34 C C18 076 . . . C 2 23.666 35.009 14.845 1 20.58 ? C18 076 100 A 1 HETATM 35 C C19 076 . . . C 2 23.467 35.881 15.913 1 18.99 ? C19 076 100 A 1 HETATM 36 C C20 076 . . . C 2 22.963 35.404 17.136 1 19.68 ? C20 076 100 A 1 HETATM 37 C C21 076 . . . C 2 22.657 34.027 17.299 1 18.38 ? C21 076 100 A 1 HETATM 38 N N2 076 . . . C 2 20.026 32.26 16.298 1 13.09 ? N2 076 100 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #