data_3TOF # _model_server_result.job_id ezAjjYP17iyCcZhXYc7KJg _model_server_result.datetime_utc '2024-11-13 07:10:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 3TOF # _exptl.entry_id 3TOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TOF _cell.length_a 51.294 _cell.length_b 58.392 _cell.length_c 61.026 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 166 n n S C1 DMS sing 167 n n S C2 DMS sing 168 n n C1 H11 DMS sing 169 n n C1 H12 DMS sing 170 n n C1 H13 DMS sing 171 n n C2 H21 DMS sing 172 n n C2 H22 DMS sing 173 n n C2 H23 DMS sing 174 n n # _atom_sites.entry_id 3TOF _atom_sites.fract_transf_matrix[1][1] 0.019495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 076 A 1 100 1 076 EPR . D 3 ACT A 1 101 2 ACT ACT . E 4 DMS A 1 102 2 DMS DMS . F 3 ACT B 1 100 1 ACT ACT . G 4 DMS B 1 101 1 DMS DMS . H 5 HOH A 1 103 103 HOH HOH . H 5 HOH A 2 104 104 HOH HOH . H 5 HOH A 3 105 105 HOH HOH . H 5 HOH A 4 106 106 HOH HOH . H 5 HOH A 5 107 107 HOH HOH . H 5 HOH A 6 108 108 HOH HOH . H 5 HOH A 7 109 109 HOH HOH . H 5 HOH A 8 110 110 HOH HOH . H 5 HOH A 9 111 111 HOH HOH . H 5 HOH A 10 112 112 HOH HOH . H 5 HOH A 11 113 2 HOH HOH . H 5 HOH A 12 114 3 HOH HOH . H 5 HOH A 13 115 5 HOH HOH . H 5 HOH A 14 116 6 HOH HOH . H 5 HOH A 15 117 117 HOH HOH . H 5 HOH A 16 118 8 HOH HOH . H 5 HOH A 17 119 12 HOH HOH . H 5 HOH A 18 120 120 HOH HOH . H 5 HOH A 19 121 121 HOH HOH . H 5 HOH A 20 122 17 HOH HOH . H 5 HOH A 21 123 18 HOH HOH . H 5 HOH A 22 124 124 HOH HOH . H 5 HOH A 23 125 125 HOH HOH . H 5 HOH A 24 126 126 HOH HOH . H 5 HOH A 25 127 20 HOH HOH . H 5 HOH A 26 128 21 HOH HOH . H 5 HOH A 27 129 23 HOH HOH . H 5 HOH A 28 130 26 HOH HOH . H 5 HOH A 29 131 131 HOH HOH . H 5 HOH A 30 132 28 HOH HOH . H 5 HOH A 31 133 133 HOH HOH . H 5 HOH A 32 134 34 HOH HOH . H 5 HOH A 33 135 35 HOH HOH . H 5 HOH A 34 136 36 HOH HOH . H 5 HOH A 35 137 38 HOH HOH . H 5 HOH A 36 138 138 HOH HOH . H 5 HOH A 37 139 42 HOH HOH . H 5 HOH A 38 140 43 HOH HOH . H 5 HOH A 39 141 44 HOH HOH . H 5 HOH A 40 142 45 HOH HOH . H 5 HOH A 41 143 49 HOH HOH . H 5 HOH A 42 144 50 HOH HOH . H 5 HOH A 43 145 51 HOH HOH . H 5 HOH A 44 146 54 HOH HOH . H 5 HOH A 45 147 56 HOH HOH . H 5 HOH A 46 148 57 HOH HOH . H 5 HOH A 47 149 149 HOH HOH . H 5 HOH A 48 150 62 HOH HOH . H 5 HOH A 49 151 65 HOH HOH . H 5 HOH A 50 152 66 HOH HOH . H 5 HOH A 51 154 67 HOH HOH . H 5 HOH A 52 155 69 HOH HOH . H 5 HOH A 53 156 71 HOH HOH . H 5 HOH A 54 157 74 HOH HOH . H 5 HOH A 55 158 158 HOH HOH . H 5 HOH A 56 159 78 HOH HOH . H 5 HOH A 57 160 79 HOH HOH . H 5 HOH A 58 161 80 HOH HOH . H 5 HOH A 59 162 81 HOH HOH . H 5 HOH A 60 163 83 HOH HOH . H 5 HOH A 61 164 84 HOH HOH . H 5 HOH A 62 165 165 HOH HOH . H 5 HOH A 63 166 166 HOH HOH . H 5 HOH A 64 167 167 HOH HOH . H 5 HOH A 65 168 168 HOH HOH . H 5 HOH A 66 169 85 HOH HOH . H 5 HOH A 67 170 86 HOH HOH . H 5 HOH A 68 171 171 HOH HOH . H 5 HOH A 69 172 87 HOH HOH . H 5 HOH A 70 173 88 HOH HOH . H 5 HOH A 71 174 174 HOH HOH . H 5 HOH A 72 175 89 HOH HOH . H 5 HOH A 73 176 93 HOH HOH . H 5 HOH A 74 177 177 HOH HOH . H 5 HOH A 75 178 96 HOH HOH . H 5 HOH A 76 179 99 HOH HOH . H 5 HOH A 77 180 102 HOH HOH . H 5 HOH A 78 181 181 HOH HOH . H 5 HOH A 79 206 206 HOH HOH . H 5 HOH A 80 214 214 HOH HOH . H 5 HOH A 81 215 215 HOH HOH . H 5 HOH A 82 216 216 HOH HOH . H 5 HOH A 83 218 218 HOH HOH . H 5 HOH A 84 221 221 HOH HOH . H 5 HOH A 85 222 222 HOH HOH . H 5 HOH A 86 223 223 HOH HOH . H 5 HOH A 87 224 224 HOH HOH . H 5 HOH A 88 225 225 HOH HOH . H 5 HOH A 89 230 230 HOH HOH . H 5 HOH A 90 233 233 HOH HOH . H 5 HOH A 91 234 234 HOH HOH . H 5 HOH A 92 236 236 HOH HOH . H 5 HOH A 93 238 238 HOH HOH . H 5 HOH A 94 239 239 HOH HOH . H 5 HOH A 95 241 241 HOH HOH . I 5 HOH B 1 102 1 HOH HOH . I 5 HOH B 2 103 7 HOH HOH . I 5 HOH B 3 104 9 HOH HOH . I 5 HOH B 4 105 10 HOH HOH . I 5 HOH B 5 106 11 HOH HOH . I 5 HOH B 6 107 13 HOH HOH . I 5 HOH B 7 108 14 HOH HOH . I 5 HOH B 8 109 15 HOH HOH . I 5 HOH B 9 110 16 HOH HOH . I 5 HOH B 10 111 22 HOH HOH . I 5 HOH B 11 112 24 HOH HOH . I 5 HOH B 12 113 113 HOH HOH . I 5 HOH B 13 114 114 HOH HOH . I 5 HOH B 14 115 25 HOH HOH . I 5 HOH B 15 116 27 HOH HOH . I 5 HOH B 16 117 29 HOH HOH . I 5 HOH B 17 118 30 HOH HOH . I 5 HOH B 18 119 31 HOH HOH . I 5 HOH B 19 120 32 HOH HOH . I 5 HOH B 20 121 33 HOH HOH . I 5 HOH B 21 122 122 HOH HOH . I 5 HOH B 22 123 37 HOH HOH . I 5 HOH B 23 124 39 HOH HOH . I 5 HOH B 24 125 40 HOH HOH . I 5 HOH B 25 126 41 HOH HOH . I 5 HOH B 26 127 127 HOH HOH . I 5 HOH B 27 128 46 HOH HOH . I 5 HOH B 28 129 129 HOH HOH . I 5 HOH B 29 130 47 HOH HOH . I 5 HOH B 30 131 48 HOH HOH . I 5 HOH B 31 132 52 HOH HOH . I 5 HOH B 32 133 53 HOH HOH . I 5 HOH B 33 134 55 HOH HOH . I 5 HOH B 34 135 135 HOH HOH . I 5 HOH B 35 136 136 HOH HOH . I 5 HOH B 36 137 58 HOH HOH . I 5 HOH B 37 138 59 HOH HOH . I 5 HOH B 38 139 60 HOH HOH . I 5 HOH B 39 140 140 HOH HOH . I 5 HOH B 40 141 141 HOH HOH . I 5 HOH B 41 142 61 HOH HOH . I 5 HOH B 42 143 143 HOH HOH . I 5 HOH B 43 144 144 HOH HOH . I 5 HOH B 44 145 63 HOH HOH . I 5 HOH B 45 146 146 HOH HOH . I 5 HOH B 46 147 68 HOH HOH . I 5 HOH B 47 148 148 HOH HOH . I 5 HOH B 48 149 70 HOH HOH . I 5 HOH B 49 150 72 HOH HOH . I 5 HOH B 50 151 151 HOH HOH . I 5 HOH B 51 152 73 HOH HOH . I 5 HOH B 52 153 153 HOH HOH . I 5 HOH B 53 154 76 HOH HOH . I 5 HOH B 54 155 155 HOH HOH . I 5 HOH B 55 156 156 HOH HOH . I 5 HOH B 56 157 82 HOH HOH . I 5 HOH B 57 158 90 HOH HOH . I 5 HOH B 58 159 91 HOH HOH . I 5 HOH B 59 160 160 HOH HOH . I 5 HOH B 60 161 92 HOH HOH . I 5 HOH B 61 162 94 HOH HOH . I 5 HOH B 62 163 163 HOH HOH . I 5 HOH B 63 164 95 HOH HOH . I 5 HOH B 64 165 98 HOH HOH . I 5 HOH B 65 166 100 HOH HOH . I 5 HOH B 66 167 75 HOH HOH . I 5 HOH B 67 173 173 HOH HOH . I 5 HOH B 68 175 175 HOH HOH . I 5 HOH B 69 176 176 HOH HOH . I 5 HOH B 70 178 178 HOH HOH . I 5 HOH B 71 183 183 HOH HOH . I 5 HOH B 72 193 193 HOH HOH . I 5 HOH B 73 203 203 HOH HOH . I 5 HOH B 74 213 213 HOH HOH . I 5 HOH B 75 217 217 HOH HOH . I 5 HOH B 76 219 219 HOH HOH . I 5 HOH B 77 226 226 HOH HOH . I 5 HOH B 78 231 231 HOH HOH . I 5 HOH B 79 232 232 HOH HOH . I 5 HOH B 80 235 235 HOH HOH . I 5 HOH B 81 237 237 HOH HOH . I 5 HOH B 82 240 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 -2.04 25.838 21.639 0.5 13.09 ? S DMS 102 A 1 HETATM 2 O O DMS . . . E 4 -2.954 24.775 20.65 0.5 8.73 ? O DMS 102 A 1 HETATM 3 C C1 DMS . . . E 4 -3.37 26.757 22.534 0.5 9.01 ? C1 DMS 102 A 1 HETATM 4 C C2 DMS . . . E 4 -1.224 24.911 22.95 0.5 5.97 ? C2 DMS 102 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #