data_3TOG
#
_model_server_result.job_id            JAx8Lj7dq9Ga3GXtvyX4xg 
_model_server_result.datetime_utc      '2024-11-17 21:45:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tog 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":100}' 
#
_entry.id    3TOG 
#
_exptl.entry_id    3TOG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.73 
_cell.angle_gamma         90 
_cell.entry_id            3TOG 
_cell.length_a            51.191 
_cell.length_b            62.136 
_cell.length_c            58.751 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TOG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,J,K 1 1 
C,D,H,I,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 163 n n 
S C1 DMS sing 164 n n 
S C2 DMS sing 165 n n 
C1 H11 DMS sing 166 n n 
C1 H12 DMS sing 167 n n 
C1 H13 DMS sing 168 n n 
C2 H21 DMS sing 169 n n 
C2 H22 DMS sing 170 n n 
C2 H23 DMS sing 171 n n 
#
_atom_sites.entry_id                     3TOG 
_atom_sites.fract_transf_matrix[1][1]    0.019535 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003001 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016094 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017221 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 DMS A 1 100 2 DMS DMS . 
F 3 079 A 1 101 1 079 EPR . 
G 2 DMS B 1 100 3 DMS DMS . 
H 2 DMS D 1 100 1 DMS DMS . 
I 3 079 D 1 101 2 079 EPR . 
J 4 HOH A 1 201 3 HOH HOH . 
J 4 HOH A 2 202 5 HOH HOH . 
J 4 HOH A 3 203 7 HOH HOH . 
J 4 HOH A 4 204 16 HOH HOH . 
J 4 HOH A 5 205 18 HOH HOH . 
J 4 HOH A 6 206 108 HOH HOH . 
J 4 HOH A 7 207 19 HOH HOH . 
J 4 HOH A 8 208 24 HOH HOH . 
J 4 HOH A 9 209 111 HOH HOH . 
J 4 HOH A 10 210 112 HOH HOH . 
J 4 HOH A 11 211 26 HOH HOH . 
J 4 HOH A 12 212 114 HOH HOH . 
J 4 HOH A 13 213 27 HOH HOH . 
J 4 HOH A 14 214 116 HOH HOH . 
J 4 HOH A 15 215 32 HOH HOH . 
J 4 HOH A 16 216 118 HOH HOH . 
J 4 HOH A 17 217 33 HOH HOH . 
J 4 HOH A 18 218 34 HOH HOH . 
J 4 HOH A 19 219 46 HOH HOH . 
J 4 HOH A 20 220 122 HOH HOH . 
J 4 HOH A 21 221 49 HOH HOH . 
J 4 HOH A 22 222 52 HOH HOH . 
J 4 HOH A 23 223 53 HOH HOH . 
J 4 HOH A 24 224 54 HOH HOH . 
J 4 HOH A 25 225 61 HOH HOH . 
J 4 HOH A 26 226 64 HOH HOH . 
J 4 HOH A 27 227 129 HOH HOH . 
J 4 HOH A 28 228 65 HOH HOH . 
J 4 HOH A 29 229 131 HOH HOH . 
J 4 HOH A 30 230 132 HOH HOH . 
J 4 HOH A 31 231 133 HOH HOH . 
J 4 HOH A 32 232 66 HOH HOH . 
J 4 HOH A 33 233 70 HOH HOH . 
J 4 HOH A 34 234 74 HOH HOH . 
J 4 HOH A 35 235 137 HOH HOH . 
J 4 HOH A 36 236 76 HOH HOH . 
J 4 HOH A 37 237 139 HOH HOH . 
J 4 HOH A 38 238 77 HOH HOH . 
J 4 HOH A 39 239 79 HOH HOH . 
J 4 HOH A 40 240 85 HOH HOH . 
J 4 HOH A 41 241 93 HOH HOH . 
J 4 HOH A 42 242 96 HOH HOH . 
J 4 HOH A 43 243 97 HOH HOH . 
J 4 HOH A 44 244 146 HOH HOH . 
J 4 HOH A 45 245 147 HOH HOH . 
J 4 HOH A 46 246 148 HOH HOH . 
J 4 HOH A 47 247 101 HOH HOH . 
J 4 HOH A 48 248 156 HOH HOH . 
J 4 HOH A 49 249 159 HOH HOH . 
J 4 HOH A 50 250 160 HOH HOH . 
J 4 HOH A 51 251 166 HOH HOH . 
J 4 HOH A 52 252 167 HOH HOH . 
J 4 HOH A 53 253 169 HOH HOH . 
J 4 HOH A 54 254 170 HOH HOH . 
J 4 HOH A 55 255 177 HOH HOH . 
J 4 HOH A 56 256 182 HOH HOH . 
J 4 HOH A 57 257 186 HOH HOH . 
J 4 HOH A 58 258 192 HOH HOH . 
J 4 HOH A 59 259 194 HOH HOH . 
J 4 HOH A 60 260 195 HOH HOH . 
J 4 HOH A 61 261 197 HOH HOH . 
J 4 HOH A 62 262 200 HOH HOH . 
J 4 HOH A 63 263 201 HOH HOH . 
J 4 HOH A 64 264 207 HOH HOH . 
J 4 HOH A 65 265 208 HOH HOH . 
J 4 HOH A 66 266 213 HOH HOH . 
J 4 HOH A 67 267 215 HOH HOH . 
J 4 HOH A 68 268 219 HOH HOH . 
J 4 HOH A 69 269 221 HOH HOH . 
J 4 HOH A 70 270 223 HOH HOH . 
J 4 HOH A 71 271 225 HOH HOH . 
J 4 HOH A 72 272 231 HOH HOH . 
J 4 HOH A 73 273 239 HOH HOH . 
J 4 HOH A 74 274 240 HOH HOH . 
J 4 HOH A 75 275 241 HOH HOH . 
J 4 HOH A 76 276 242 HOH HOH . 
J 4 HOH A 77 277 247 HOH HOH . 
J 4 HOH A 78 278 253 HOH HOH . 
J 4 HOH A 79 279 254 HOH HOH . 
J 4 HOH A 80 280 264 HOH HOH . 
J 4 HOH A 81 281 2 HOH HOH . 
K 4 HOH B 1 201 8 HOH HOH . 
K 4 HOH B 2 202 23 HOH HOH . 
K 4 HOH B 3 203 28 HOH HOH . 
K 4 HOH B 4 204 35 HOH HOH . 
K 4 HOH B 5 205 39 HOH HOH . 
K 4 HOH B 6 206 107 HOH HOH . 
K 4 HOH B 7 207 48 HOH HOH . 
K 4 HOH B 8 208 50 HOH HOH . 
K 4 HOH B 9 209 62 HOH HOH . 
K 4 HOH B 10 210 69 HOH HOH . 
K 4 HOH B 11 211 71 HOH HOH . 
K 4 HOH B 12 212 72 HOH HOH . 
K 4 HOH B 13 213 73 HOH HOH . 
K 4 HOH B 14 214 115 HOH HOH . 
K 4 HOH B 15 215 78 HOH HOH . 
K 4 HOH B 16 216 82 HOH HOH . 
K 4 HOH B 17 217 86 HOH HOH . 
K 4 HOH B 18 218 94 HOH HOH . 
K 4 HOH B 19 219 11 HOH HOH . 
K 4 HOH B 20 220 125 HOH HOH . 
K 4 HOH B 21 221 130 HOH HOH . 
K 4 HOH B 22 222 134 HOH HOH . 
K 4 HOH B 23 223 138 HOH HOH . 
K 4 HOH B 24 224 140 HOH HOH . 
K 4 HOH B 25 225 144 HOH HOH . 
K 4 HOH B 26 226 150 HOH HOH . 
K 4 HOH B 27 227 154 HOH HOH . 
K 4 HOH B 28 228 161 HOH HOH . 
K 4 HOH B 29 229 165 HOH HOH . 
K 4 HOH B 30 230 175 HOH HOH . 
K 4 HOH B 31 231 178 HOH HOH . 
K 4 HOH B 32 232 183 HOH HOH . 
K 4 HOH B 33 233 188 HOH HOH . 
K 4 HOH B 34 234 189 HOH HOH . 
K 4 HOH B 35 235 190 HOH HOH . 
K 4 HOH B 36 236 193 HOH HOH . 
K 4 HOH B 37 237 196 HOH HOH . 
K 4 HOH B 38 238 202 HOH HOH . 
K 4 HOH B 39 239 209 HOH HOH . 
K 4 HOH B 40 240 210 HOH HOH . 
K 4 HOH B 41 241 212 HOH HOH . 
K 4 HOH B 42 242 214 HOH HOH . 
K 4 HOH B 43 243 222 HOH HOH . 
K 4 HOH B 44 244 230 HOH HOH . 
K 4 HOH B 45 245 232 HOH HOH . 
K 4 HOH B 46 246 233 HOH HOH . 
K 4 HOH B 47 247 234 HOH HOH . 
K 4 HOH B 48 248 235 HOH HOH . 
K 4 HOH B 49 249 244 HOH HOH . 
K 4 HOH B 50 250 251 HOH HOH . 
K 4 HOH B 51 251 252 HOH HOH . 
K 4 HOH B 52 252 256 HOH HOH . 
K 4 HOH B 53 253 257 HOH HOH . 
K 4 HOH B 54 254 267 HOH HOH . 
K 4 HOH B 55 255 268 HOH HOH . 
K 4 HOH B 56 256 269 HOH HOH . 
K 4 HOH B 57 257 270 HOH HOH . 
K 4 HOH B 58 258 271 HOH HOH . 
L 4 HOH C 1 101 100 HOH HOH . 
L 4 HOH C 2 102 9 HOH HOH . 
L 4 HOH C 3 103 14 HOH HOH . 
L 4 HOH C 4 104 103 HOH HOH . 
L 4 HOH C 5 105 104 HOH HOH . 
L 4 HOH C 6 106 15 HOH HOH . 
L 4 HOH C 7 107 20 HOH HOH . 
L 4 HOH C 8 108 25 HOH HOH . 
L 4 HOH C 9 109 29 HOH HOH . 
L 4 HOH C 10 110 109 HOH HOH . 
L 4 HOH C 11 111 110 HOH HOH . 
L 4 HOH C 12 112 31 HOH HOH . 
L 4 HOH C 13 113 36 HOH HOH . 
L 4 HOH C 14 114 41 HOH HOH . 
L 4 HOH C 15 115 42 HOH HOH . 
L 4 HOH C 16 116 45 HOH HOH . 
L 4 HOH C 17 117 51 HOH HOH . 
L 4 HOH C 18 118 57 HOH HOH . 
L 4 HOH C 19 119 58 HOH HOH . 
L 4 HOH C 20 120 119 HOH HOH . 
L 4 HOH C 21 121 60 HOH HOH . 
L 4 HOH C 22 122 63 HOH HOH . 
L 4 HOH C 23 123 67 HOH HOH . 
L 4 HOH C 24 124 123 HOH HOH . 
L 4 HOH C 25 125 124 HOH HOH . 
L 4 HOH C 26 126 75 HOH HOH . 
L 4 HOH C 27 127 126 HOH HOH . 
L 4 HOH C 28 128 127 HOH HOH . 
L 4 HOH C 29 129 128 HOH HOH . 
L 4 HOH C 30 130 81 HOH HOH . 
L 4 HOH C 31 131 84 HOH HOH . 
L 4 HOH C 32 132 88 HOH HOH . 
L 4 HOH C 33 133 91 HOH HOH . 
L 4 HOH C 34 134 99 HOH HOH . 
L 4 HOH C 35 135 136 HOH HOH . 
L 4 HOH C 36 136 141 HOH HOH . 
L 4 HOH C 37 137 142 HOH HOH . 
L 4 HOH C 38 138 143 HOH HOH . 
L 4 HOH C 39 139 149 HOH HOH . 
L 4 HOH C 40 140 153 HOH HOH . 
L 4 HOH C 41 141 157 HOH HOH . 
L 4 HOH C 42 142 158 HOH HOH . 
L 4 HOH C 43 143 162 HOH HOH . 
L 4 HOH C 44 144 163 HOH HOH . 
L 4 HOH C 45 145 164 HOH HOH . 
L 4 HOH C 46 146 168 HOH HOH . 
L 4 HOH C 47 147 171 HOH HOH . 
L 4 HOH C 48 148 173 HOH HOH . 
L 4 HOH C 49 149 174 HOH HOH . 
L 4 HOH C 50 150 176 HOH HOH . 
L 4 HOH C 51 151 179 HOH HOH . 
L 4 HOH C 52 152 181 HOH HOH . 
L 4 HOH C 53 153 191 HOH HOH . 
L 4 HOH C 54 154 198 HOH HOH . 
L 4 HOH C 55 155 199 HOH HOH . 
L 4 HOH C 56 156 204 HOH HOH . 
L 4 HOH C 57 157 206 HOH HOH . 
L 4 HOH C 58 158 211 HOH HOH . 
L 4 HOH C 59 159 216 HOH HOH . 
L 4 HOH C 60 160 220 HOH HOH . 
L 4 HOH C 61 161 226 HOH HOH . 
L 4 HOH C 62 162 227 HOH HOH . 
L 4 HOH C 63 163 243 HOH HOH . 
L 4 HOH C 64 164 246 HOH HOH . 
L 4 HOH C 65 165 248 HOH HOH . 
L 4 HOH C 66 166 249 HOH HOH . 
L 4 HOH C 67 167 250 HOH HOH . 
L 4 HOH C 68 168 255 HOH HOH . 
L 4 HOH C 69 169 258 HOH HOH . 
L 4 HOH C 70 170 259 HOH HOH . 
L 4 HOH C 71 171 266 HOH HOH . 
M 4 HOH D 1 201 102 HOH HOH . 
M 4 HOH D 2 202 1 HOH HOH . 
M 4 HOH D 3 203 4 HOH HOH . 
M 4 HOH D 4 204 105 HOH HOH . 
M 4 HOH D 5 205 106 HOH HOH . 
M 4 HOH D 6 206 6 HOH HOH . 
M 4 HOH D 7 207 10 HOH HOH . 
M 4 HOH D 8 208 12 HOH HOH . 
M 4 HOH D 9 209 13 HOH HOH . 
M 4 HOH D 10 210 17 HOH HOH . 
M 4 HOH D 11 211 21 HOH HOH . 
M 4 HOH D 12 212 113 HOH HOH . 
M 4 HOH D 13 213 22 HOH HOH . 
M 4 HOH D 14 214 30 HOH HOH . 
M 4 HOH D 15 215 37 HOH HOH . 
M 4 HOH D 16 216 117 HOH HOH . 
M 4 HOH D 17 217 38 HOH HOH . 
M 4 HOH D 18 218 40 HOH HOH . 
M 4 HOH D 19 219 120 HOH HOH . 
M 4 HOH D 20 220 121 HOH HOH . 
M 4 HOH D 21 221 43 HOH HOH . 
M 4 HOH D 22 222 44 HOH HOH . 
M 4 HOH D 23 223 47 HOH HOH . 
M 4 HOH D 24 224 55 HOH HOH . 
M 4 HOH D 25 225 59 HOH HOH . 
M 4 HOH D 26 226 68 HOH HOH . 
M 4 HOH D 27 227 80 HOH HOH . 
M 4 HOH D 28 228 83 HOH HOH . 
M 4 HOH D 29 229 87 HOH HOH . 
M 4 HOH D 30 230 89 HOH HOH . 
M 4 HOH D 31 231 90 HOH HOH . 
M 4 HOH D 32 232 92 HOH HOH . 
M 4 HOH D 33 233 95 HOH HOH . 
M 4 HOH D 34 234 135 HOH HOH . 
M 4 HOH D 35 235 98 HOH HOH . 
M 4 HOH D 36 236 145 HOH HOH . 
M 4 HOH D 37 237 151 HOH HOH . 
M 4 HOH D 38 238 152 HOH HOH . 
M 4 HOH D 39 239 155 HOH HOH . 
M 4 HOH D 40 240 172 HOH HOH . 
M 4 HOH D 41 241 180 HOH HOH . 
M 4 HOH D 42 242 184 HOH HOH . 
M 4 HOH D 43 243 185 HOH HOH . 
M 4 HOH D 44 244 187 HOH HOH . 
M 4 HOH D 45 245 203 HOH HOH . 
M 4 HOH D 46 246 205 HOH HOH . 
M 4 HOH D 47 247 217 HOH HOH . 
M 4 HOH D 48 248 218 HOH HOH . 
M 4 HOH D 49 249 224 HOH HOH . 
M 4 HOH D 50 250 228 HOH HOH . 
M 4 HOH D 51 251 229 HOH HOH . 
M 4 HOH D 52 252 237 HOH HOH . 
M 4 HOH D 53 253 238 HOH HOH . 
M 4 HOH D 54 254 245 HOH HOH . 
M 4 HOH D 55 255 260 HOH HOH . 
M 4 HOH D 56 256 261 HOH HOH . 
M 4 HOH D 57 257 262 HOH HOH . 
M 4 HOH D 58 258 263 HOH HOH . 
M 4 HOH D 59 259 265 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . H 2 53.61 2.187 3.644 1 19.27 ? S DMS 100 D 1 
HETATM 2 O O DMS . . . H 2 54.436 3.259 2.582 1 19.42 ? O DMS 100 D 1 
HETATM 3 C C1 DMS . . . H 2 54.968 1.473 4.649 1 18.55 ? C1 DMS 100 D 1 
HETATM 4 C C2 DMS . . . H 2 52.839 3.348 4.778 1 14.6 ? C2 DMS 100 D 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#