data_3TOH # _model_server_result.job_id K_5YBiqeH-BSal6tq08YPQ _model_server_result.datetime_utc '2024-11-13 05:39:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3toh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 3TOH # _exptl.entry_id 3TOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 533.658 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-N-((2S,3S,4R,5R)-4-amino-3,5-dihydroxy-1,6-diphenylhexan-2-yl)-3-methyl-2-(2-phenoxyacetamido)butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TOH _cell.length_a 51.268 _cell.length_b 58.377 _cell.length_c 61.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H39 N3 O5' _chem_comp.formula_weight 533.658 _chem_comp.id 079 _chem_comp.mon_nstd_flag . _chem_comp.name (S)-N-((2S,3S,4R,5R)-4-amino-3,5-dihydroxy-1,6-diphenylhexan-2-yl)-3-methyl-2-(2-phenoxyacetamido)butanamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 079 doub 1 n y C29 C30 079 sing 2 n y C28 C27 079 sing 3 n y C30 C31 079 doub 4 n y C27 C26 079 doub 5 n y C31 C26 079 sing 6 n y C26 C25 079 sing 7 n n O5 C24 079 sing 8 n n C25 C24 079 sing 9 n n C24 C23 079 sing 10 n n C23 N3 079 sing 11 n n C23 C22 079 sing 12 n n C22 C14 079 sing 13 n n C22 O4 079 sing 14 n n O3 C13 079 doub 15 n n C14 C15 079 sing 16 n n C14 N2 079 sing 17 n n C17 C18 079 doub 18 n y C17 C16 079 sing 19 n y C12 C10 079 sing 20 n n C13 N2 079 sing 21 n n C13 C9 079 sing 22 n n C15 C16 079 sing 23 n n C18 C19 079 sing 24 n y C16 C21 079 doub 25 n y C10 C9 079 sing 26 n n C10 C11 079 sing 27 n n C9 N1 079 sing 28 n n C19 C20 079 doub 29 n y N1 C1 079 sing 30 n n C21 C20 079 sing 31 n y C8 C7 079 doub 32 n y C8 C3 079 sing 33 n y C7 C6 079 sing 34 n y O2 C3 079 sing 35 n n O2 C2 079 sing 36 n n C3 C4 079 doub 37 n y C1 O1 079 doub 38 n n C1 C2 079 sing 39 n n C6 C5 079 doub 40 n y C4 C5 079 sing 41 n y C27 H1 079 sing 42 n n C28 H2 079 sing 43 n n C29 H3 079 sing 44 n n C30 H4 079 sing 45 n n C31 H5 079 sing 46 n n C25 H6 079 sing 47 n n C25 H7 079 sing 48 n n C24 H8 079 sing 49 n n O5 H9 079 sing 50 n n C23 H10 079 sing 51 n n N3 H11 079 sing 52 n n N3 H12 079 sing 53 n n C22 H14 079 sing 54 n n O4 H15 079 sing 55 n n C14 H16 079 sing 56 n n C15 H17 079 sing 57 n n C15 H18 079 sing 58 n n C17 H19 079 sing 59 n n C18 H20 079 sing 60 n n C19 H21 079 sing 61 n n C20 H22 079 sing 62 n n C21 H23 079 sing 63 n n N2 H24 079 sing 64 n n C9 H25 079 sing 65 n n C10 H26 079 sing 66 n n C12 H27 079 sing 67 n n C12 H28 079 sing 68 n n C12 H29 079 sing 69 n n C11 H30 079 sing 70 n n C11 H31 079 sing 71 n n C11 H32 079 sing 72 n n N1 H33 079 sing 73 n n C2 H34 079 sing 74 n n C2 H35 079 sing 75 n n C4 H36 079 sing 76 n n C5 H37 079 sing 77 n n C6 H38 079 sing 78 n n C7 H39 079 sing 79 n n C8 H40 079 sing 80 n n # _atom_sites.entry_id 3TOH _atom_sites.fract_transf_matrix[1][1] 0.019505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 079 A 1 100 1 079 EPR . D 3 DMS A 1 101 2 DMS DMS . E 3 DMS A 1 102 3 DMS DMS . F 3 DMS B 1 100 1 DMS DMS . G 4 HOH A 1 201 103 HOH HOH . G 4 HOH A 2 202 104 HOH HOH . G 4 HOH A 3 203 105 HOH HOH . G 4 HOH A 4 204 106 HOH HOH . G 4 HOH A 5 205 107 HOH HOH . G 4 HOH A 6 206 108 HOH HOH . G 4 HOH A 7 207 109 HOH HOH . G 4 HOH A 8 208 110 HOH HOH . G 4 HOH A 9 209 111 HOH HOH . G 4 HOH A 10 210 112 HOH HOH . G 4 HOH A 11 211 2 HOH HOH . G 4 HOH A 12 212 3 HOH HOH . G 4 HOH A 13 213 5 HOH HOH . G 4 HOH A 14 214 6 HOH HOH . G 4 HOH A 15 215 117 HOH HOH . G 4 HOH A 16 216 8 HOH HOH . G 4 HOH A 17 217 12 HOH HOH . G 4 HOH A 18 218 17 HOH HOH . G 4 HOH A 19 219 121 HOH HOH . G 4 HOH A 20 220 18 HOH HOH . G 4 HOH A 21 221 20 HOH HOH . G 4 HOH A 22 222 124 HOH HOH . G 4 HOH A 23 223 125 HOH HOH . G 4 HOH A 24 224 126 HOH HOH . G 4 HOH A 25 225 21 HOH HOH . G 4 HOH A 26 226 23 HOH HOH . G 4 HOH A 27 227 26 HOH HOH . G 4 HOH A 28 228 28 HOH HOH . G 4 HOH A 29 229 131 HOH HOH . G 4 HOH A 30 230 34 HOH HOH . G 4 HOH A 31 231 133 HOH HOH . G 4 HOH A 32 232 35 HOH HOH . G 4 HOH A 33 233 36 HOH HOH . G 4 HOH A 34 234 38 HOH HOH . G 4 HOH A 35 235 42 HOH HOH . G 4 HOH A 36 236 138 HOH HOH . G 4 HOH A 37 237 43 HOH HOH . G 4 HOH A 38 238 44 HOH HOH . G 4 HOH A 39 239 45 HOH HOH . G 4 HOH A 40 240 49 HOH HOH . G 4 HOH A 41 241 50 HOH HOH . G 4 HOH A 42 242 51 HOH HOH . G 4 HOH A 43 243 54 HOH HOH . G 4 HOH A 44 244 56 HOH HOH . G 4 HOH A 45 245 57 HOH HOH . G 4 HOH A 46 246 62 HOH HOH . G 4 HOH A 47 247 149 HOH HOH . G 4 HOH A 48 248 65 HOH HOH . G 4 HOH A 49 249 66 HOH HOH . G 4 HOH A 50 250 67 HOH HOH . G 4 HOH A 51 251 69 HOH HOH . G 4 HOH A 52 252 71 HOH HOH . G 4 HOH A 53 253 74 HOH HOH . G 4 HOH A 54 254 78 HOH HOH . G 4 HOH A 55 255 158 HOH HOH . G 4 HOH A 56 256 79 HOH HOH . G 4 HOH A 57 257 80 HOH HOH . G 4 HOH A 58 258 81 HOH HOH . G 4 HOH A 59 259 83 HOH HOH . G 4 HOH A 60 260 84 HOH HOH . G 4 HOH A 61 261 85 HOH HOH . G 4 HOH A 62 262 165 HOH HOH . G 4 HOH A 63 263 166 HOH HOH . G 4 HOH A 64 264 167 HOH HOH . G 4 HOH A 65 265 168 HOH HOH . G 4 HOH A 66 266 86 HOH HOH . G 4 HOH A 67 267 87 HOH HOH . G 4 HOH A 68 268 171 HOH HOH . G 4 HOH A 69 269 88 HOH HOH . G 4 HOH A 70 270 89 HOH HOH . G 4 HOH A 71 271 174 HOH HOH . G 4 HOH A 72 272 93 HOH HOH . G 4 HOH A 73 273 96 HOH HOH . G 4 HOH A 74 274 177 HOH HOH . G 4 HOH A 75 275 99 HOH HOH . G 4 HOH A 76 276 102 HOH HOH . G 4 HOH A 77 277 181 HOH HOH . G 4 HOH A 78 278 206 HOH HOH . G 4 HOH A 79 279 214 HOH HOH . G 4 HOH A 80 280 215 HOH HOH . G 4 HOH A 81 281 216 HOH HOH . G 4 HOH A 82 282 218 HOH HOH . G 4 HOH A 83 283 221 HOH HOH . G 4 HOH A 84 284 222 HOH HOH . G 4 HOH A 85 285 223 HOH HOH . G 4 HOH A 86 286 224 HOH HOH . G 4 HOH A 87 287 225 HOH HOH . G 4 HOH A 88 288 230 HOH HOH . G 4 HOH A 89 289 233 HOH HOH . G 4 HOH A 90 290 234 HOH HOH . G 4 HOH A 91 291 236 HOH HOH . G 4 HOH A 92 292 238 HOH HOH . G 4 HOH A 93 293 239 HOH HOH . G 4 HOH A 94 294 241 HOH HOH . G 4 HOH A 95 295 153 HOH HOH . H 4 HOH B 1 201 1 HOH HOH . H 4 HOH B 2 202 7 HOH HOH . H 4 HOH B 3 203 9 HOH HOH . H 4 HOH B 4 204 10 HOH HOH . H 4 HOH B 5 205 11 HOH HOH . H 4 HOH B 6 206 13 HOH HOH . H 4 HOH B 7 207 14 HOH HOH . H 4 HOH B 8 208 15 HOH HOH . H 4 HOH B 9 209 16 HOH HOH . H 4 HOH B 10 210 22 HOH HOH . H 4 HOH B 11 211 24 HOH HOH . H 4 HOH B 12 212 25 HOH HOH . H 4 HOH B 13 213 113 HOH HOH . H 4 HOH B 14 214 114 HOH HOH . H 4 HOH B 15 215 27 HOH HOH . H 4 HOH B 16 216 29 HOH HOH . H 4 HOH B 17 217 30 HOH HOH . H 4 HOH B 18 218 31 HOH HOH . H 4 HOH B 19 219 119 HOH HOH . H 4 HOH B 20 220 120 HOH HOH . H 4 HOH B 21 221 32 HOH HOH . H 4 HOH B 22 222 122 HOH HOH . H 4 HOH B 23 223 33 HOH HOH . H 4 HOH B 24 224 37 HOH HOH . H 4 HOH B 25 225 39 HOH HOH . H 4 HOH B 26 226 40 HOH HOH . H 4 HOH B 27 227 127 HOH HOH . H 4 HOH B 28 228 41 HOH HOH . H 4 HOH B 29 229 129 HOH HOH . H 4 HOH B 30 230 46 HOH HOH . H 4 HOH B 31 231 47 HOH HOH . H 4 HOH B 32 232 48 HOH HOH . H 4 HOH B 33 233 52 HOH HOH . H 4 HOH B 34 234 53 HOH HOH . H 4 HOH B 35 235 135 HOH HOH . H 4 HOH B 36 236 136 HOH HOH . H 4 HOH B 37 237 55 HOH HOH . H 4 HOH B 38 238 58 HOH HOH . H 4 HOH B 39 239 59 HOH HOH . H 4 HOH B 40 240 140 HOH HOH . H 4 HOH B 41 241 141 HOH HOH . H 4 HOH B 42 242 60 HOH HOH . H 4 HOH B 43 243 143 HOH HOH . H 4 HOH B 44 244 144 HOH HOH . H 4 HOH B 45 245 61 HOH HOH . H 4 HOH B 46 246 146 HOH HOH . H 4 HOH B 47 247 63 HOH HOH . H 4 HOH B 48 248 148 HOH HOH . H 4 HOH B 49 249 68 HOH HOH . H 4 HOH B 50 250 70 HOH HOH . H 4 HOH B 51 251 151 HOH HOH . H 4 HOH B 52 252 72 HOH HOH . H 4 HOH B 53 253 75 HOH HOH . H 4 HOH B 54 254 155 HOH HOH . H 4 HOH B 55 255 156 HOH HOH . H 4 HOH B 56 256 76 HOH HOH . H 4 HOH B 57 257 82 HOH HOH . H 4 HOH B 58 258 90 HOH HOH . H 4 HOH B 59 259 160 HOH HOH . H 4 HOH B 60 260 91 HOH HOH . H 4 HOH B 61 261 92 HOH HOH . H 4 HOH B 62 262 163 HOH HOH . H 4 HOH B 63 263 94 HOH HOH . H 4 HOH B 64 264 95 HOH HOH . H 4 HOH B 65 265 98 HOH HOH . H 4 HOH B 66 266 100 HOH HOH . H 4 HOH B 67 267 73 HOH HOH . H 4 HOH B 68 268 173 HOH HOH . H 4 HOH B 69 269 175 HOH HOH . H 4 HOH B 70 270 176 HOH HOH . H 4 HOH B 71 271 178 HOH HOH . H 4 HOH B 72 272 183 HOH HOH . H 4 HOH B 73 273 193 HOH HOH . H 4 HOH B 74 274 203 HOH HOH . H 4 HOH B 75 275 213 HOH HOH . H 4 HOH B 76 276 217 HOH HOH . H 4 HOH B 77 277 219 HOH HOH . H 4 HOH B 78 278 226 HOH HOH . H 4 HOH B 79 279 231 HOH HOH . H 4 HOH B 80 280 232 HOH HOH . H 4 HOH B 81 281 235 HOH HOH . H 4 HOH B 82 282 237 HOH HOH . H 4 HOH B 83 283 240 HOH HOH . H 4 HOH B 84 284 242 HOH HOH . H 4 HOH B 85 285 243 HOH HOH . H 4 HOH B 86 286 244 HOH HOH . H 4 HOH B 87 287 245 HOH HOH . H 4 HOH B 88 288 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 079 . . . C 2 19.21 35.676 18.146 1 12.6 ? C1 079 100 A 1 HETATM 2 O O1 079 . . . C 2 18.773 35.085 19.132 1 11.97 ? O1 079 100 A 1 HETATM 3 C C2 079 . . . C 2 19.944 37.003 18.38 1 14.58 ? C2 079 100 A 1 HETATM 4 O O2 079 . . . C 2 20.204 37.581 17.067 1 16.02 ? O2 079 100 A 1 HETATM 5 C C3 079 . . . C 2 21.201 38.505 16.956 1 17.04 ? C3 079 100 A 1 HETATM 6 C C4 079 . . . C 2 22.018 38.871 18.023 1 19.19 ? C4 079 100 A 1 HETATM 7 C C5 079 . . . C 2 23.026 39.821 17.823 1 20.56 ? C5 079 100 A 1 HETATM 8 C C6 079 . . . C 2 23.215 40.396 16.565 1 20.88 ? C6 079 100 A 1 HETATM 9 C C7 079 . . . C 2 22.407 40.03 15.494 1 19.57 ? C7 079 100 A 1 HETATM 10 C C8 079 . . . C 2 21.403 39.084 15.699 1 17.95 ? C8 079 100 A 1 HETATM 11 N N1 079 . . . C 2 19.047 35.227 16.894 1 13.2 ? N1 079 100 A 1 HETATM 12 C C9 079 . . . C 2 18.379 33.962 16.56 1 11.36 ? C9 079 100 A 1 HETATM 13 C C13 079 . . . C 2 19.359 33.128 15.713 1 12.47 ? C13 079 100 A 1 HETATM 14 O O3 079 . . . C 2 19.517 33.357 14.5 1 13.18 ? O3 079 100 A 1 HETATM 15 C C10 079 . . . C 2 17.025 34.152 15.882 1 14.11 ? C10 079 100 A 1 HETATM 16 C C11 079 . . . C 2 16.382 32.773 15.615 1 15.41 ? C11 079 100 A 1 HETATM 17 C C12 079 . . . C 2 16.101 35.011 16.752 1 14.84 ? C12 079 100 A 1 HETATM 18 C C27 079 . . . C 2 18.591 26.562 11.598 1 24.25 ? C27 079 100 A 1 HETATM 19 C C28 079 . . . C 2 18.582 26.383 10.214 1 26.51 ? C28 079 100 A 1 HETATM 20 C C29 079 . . . C 2 18.212 27.443 9.387 1 26.64 ? C29 079 100 A 1 HETATM 21 C C30 079 . . . C 2 17.845 28.673 9.942 1 25.59 ? C30 079 100 A 1 HETATM 22 C C31 079 . . . C 2 17.845 28.856 11.322 1 23.25 ? C31 079 100 A 1 HETATM 23 C C26 079 . . . C 2 18.246 27.796 12.14 1 21.48 ? C26 079 100 A 1 HETATM 24 C C25 079 . . . C 2 18.254 27.937 13.631 1 22.5 ? C25 079 100 A 1 HETATM 25 C C24 079 . . . C 2 19.611 28.303 14.261 1 20.51 ? C24 079 100 A 1 HETATM 26 O O5 079 . . . C 2 20.824 28.212 13.433 1 18.6 ? O5 079 100 A 1 HETATM 27 C C23 079 . . . C 2 19.522 29.677 14.835 1 18.31 ? C23 079 100 A 1 HETATM 28 N N3 079 . . . C 2 18.208 29.914 15.473 1 21.31 ? N3 079 100 A 1 HETATM 29 C C22 079 . . . C 2 20.674 29.877 15.787 1 13.83 ? C22 079 100 A 1 HETATM 30 O O4 079 . . . C 2 20.474 29.414 17.132 1 12.87 ? O4 079 100 A 1 HETATM 31 C C14 079 . . . C 2 21.045 31.341 15.765 1 13.44 ? C14 079 100 A 1 HETATM 32 C C15 079 . . . C 2 22.401 31.609 16.421 1 15.04 ? C15 079 100 A 1 HETATM 33 C C16 079 . . . C 2 22.744 33.09 16.353 1 13.5 ? C16 079 100 A 1 HETATM 34 C C17 079 . . . C 2 23.218 33.612 15.143 1 13.37 ? C17 079 100 A 1 HETATM 35 C C18 079 . . . C 2 23.547 34.963 15.055 1 14.88 ? C18 079 100 A 1 HETATM 36 C C19 079 . . . C 2 23.371 35.785 16.168 1 14.35 ? C19 079 100 A 1 HETATM 37 C C20 079 . . . C 2 22.903 35.257 17.377 1 15.35 ? C20 079 100 A 1 HETATM 38 C C21 079 . . . C 2 22.596 33.903 17.464 1 15.4 ? C21 079 100 A 1 HETATM 39 N N2 079 . . . C 2 20.008 32.181 16.416 1 12.8 ? N2 079 100 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 39 #