data_3TP0 # _model_server_result.job_id ir-v5kefwUlqR6NQSAfy5w _model_server_result.datetime_utc '2025-01-10 21:59:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":217}' # _entry.id 3TP0 # _exptl.entry_id 3TP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.352 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-oxo-3-{4-[3-(thiophen-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}propanenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TP0 _cell.length_a 119.102 _cell.length_b 119.102 _cell.length_c 33.649 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H14 N4 O2 S' _chem_comp.formula_weight 302.352 _chem_comp.id FO5 _chem_comp.mon_nstd_flag . _chem_comp.name 3-oxo-3-{4-[3-(thiophen-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}propanenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O FO5 doub 70 n n C C1 FO5 sing 71 n n C N1 FO5 sing 72 n n N C2 FO5 trip 73 n n S C10 FO5 sing 74 n y S C13 FO5 sing 75 n y C1 C2 FO5 sing 76 n n N1 C3 FO5 sing 77 n n N1 C7 FO5 sing 78 n n O1 N2 FO5 sing 79 n y O1 C8 FO5 sing 80 n y N2 C9 FO5 doub 81 n y C3 C4 FO5 sing 82 n n N3 C8 FO5 doub 83 n y N3 C9 FO5 sing 84 n y C4 C5 FO5 sing 85 n n C5 C6 FO5 sing 86 n n C5 C8 FO5 sing 87 n n C6 C7 FO5 sing 88 n n C9 C10 FO5 sing 89 n n C10 C11 FO5 doub 90 n y C11 C12 FO5 sing 91 n y C12 C13 FO5 doub 92 n y C1 H1 FO5 sing 93 n n C1 H1A FO5 sing 94 n n C3 H3 FO5 sing 95 n n C3 H3A FO5 sing 96 n n C4 H4 FO5 sing 97 n n C4 H4A FO5 sing 98 n n C5 H5 FO5 sing 99 n n C6 H6 FO5 sing 100 n n C6 H6A FO5 sing 101 n n C7 H7 FO5 sing 102 n n C7 H7A FO5 sing 103 n n C11 H11 FO5 sing 104 n n C12 H12 FO5 sing 105 n n C13 H13 FO5 sing 106 n n # _atom_sites.entry_id 3TP0 _atom_sites.fract_transf_matrix[1][1] 0.008396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FO5 A 1 217 217 FO5 FO5 . C 3 HOH A 1 218 1 HOH HOH . C 3 HOH A 2 219 2 HOH HOH . C 3 HOH A 3 220 3 HOH HOH . C 3 HOH A 4 221 4 HOH HOH . C 3 HOH A 5 222 5 HOH HOH . C 3 HOH A 6 223 6 HOH HOH . C 3 HOH A 7 224 7 HOH HOH . C 3 HOH A 8 225 8 HOH HOH . C 3 HOH A 9 226 9 HOH HOH . C 3 HOH A 10 227 10 HOH HOH . C 3 HOH A 11 228 11 HOH HOH . C 3 HOH A 12 229 12 HOH HOH . C 3 HOH A 13 230 13 HOH HOH . C 3 HOH A 14 231 14 HOH HOH . C 3 HOH A 15 232 15 HOH HOH . C 3 HOH A 16 233 16 HOH HOH . C 3 HOH A 17 234 17 HOH HOH . C 3 HOH A 18 235 18 HOH HOH . C 3 HOH A 19 236 19 HOH HOH . C 3 HOH A 20 237 20 HOH HOH . C 3 HOH A 21 238 21 HOH HOH . C 3 HOH A 22 239 22 HOH HOH . C 3 HOH A 23 240 23 HOH HOH . C 3 HOH A 24 241 24 HOH HOH . C 3 HOH A 25 242 25 HOH HOH . C 3 HOH A 26 243 26 HOH HOH . C 3 HOH A 27 244 27 HOH HOH . C 3 HOH A 28 245 28 HOH HOH . C 3 HOH A 29 246 29 HOH HOH . C 3 HOH A 30 247 30 HOH HOH . C 3 HOH A 31 248 31 HOH HOH . C 3 HOH A 32 249 32 HOH HOH . C 3 HOH A 33 250 33 HOH HOH . C 3 HOH A 34 251 34 HOH HOH . C 3 HOH A 35 252 35 HOH HOH . C 3 HOH A 36 253 36 HOH HOH . C 3 HOH A 37 254 37 HOH HOH . C 3 HOH A 38 255 38 HOH HOH . C 3 HOH A 39 256 39 HOH HOH . C 3 HOH A 40 257 40 HOH HOH . C 3 HOH A 41 258 41 HOH HOH . C 3 HOH A 42 259 42 HOH HOH . C 3 HOH A 43 260 43 HOH HOH . C 3 HOH A 44 261 44 HOH HOH . C 3 HOH A 45 262 45 HOH HOH . C 3 HOH A 46 263 46 HOH HOH . C 3 HOH A 47 264 47 HOH HOH . C 3 HOH A 48 265 48 HOH HOH . C 3 HOH A 49 266 49 HOH HOH . C 3 HOH A 50 267 50 HOH HOH . C 3 HOH A 51 268 51 HOH HOH . C 3 HOH A 52 269 52 HOH HOH . C 3 HOH A 53 270 53 HOH HOH . C 3 HOH A 54 271 54 HOH HOH . C 3 HOH A 55 272 55 HOH HOH . C 3 HOH A 56 273 56 HOH HOH . C 3 HOH A 57 274 57 HOH HOH . C 3 HOH A 58 275 58 HOH HOH . C 3 HOH A 59 276 59 HOH HOH . C 3 HOH A 60 277 60 HOH HOH . C 3 HOH A 61 278 61 HOH HOH . C 3 HOH A 62 279 62 HOH HOH . C 3 HOH A 63 280 63 HOH HOH . C 3 HOH A 64 281 64 HOH HOH . C 3 HOH A 65 282 65 HOH HOH . C 3 HOH A 66 283 66 HOH HOH . C 3 HOH A 67 284 67 HOH HOH . C 3 HOH A 68 285 68 HOH HOH . C 3 HOH A 69 286 69 HOH HOH . C 3 HOH A 70 287 70 HOH HOH . C 3 HOH A 71 288 71 HOH HOH . C 3 HOH A 72 289 72 HOH HOH . C 3 HOH A 73 290 73 HOH HOH . C 3 HOH A 74 291 74 HOH HOH . C 3 HOH A 75 292 75 HOH HOH . C 3 HOH A 76 293 76 HOH HOH . C 3 HOH A 77 294 77 HOH HOH . C 3 HOH A 78 295 78 HOH HOH . C 3 HOH A 79 296 79 HOH HOH . C 3 HOH A 80 297 80 HOH HOH . C 3 HOH A 81 298 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FO5 . . . B 2 -11.869 -27.095 1.92 1 22.68 ? C FO5 217 A 1 HETATM 2 N N FO5 . . . B 2 -14.925 -28.403 1.181 1 23.89 ? N FO5 217 A 1 HETATM 3 O O FO5 . . . B 2 -12.098 -26.74 0.725 1 23.63 ? O FO5 217 A 1 HETATM 4 S S FO5 . . . B 2 -3.137 -26.208 2.849 1 37.73 ? S FO5 217 A 1 HETATM 5 C C1 FO5 . . . B 2 -12.852 -27.939 2.721 1 21.71 ? C1 FO5 217 A 1 HETATM 6 N N1 FO5 . . . B 2 -10.766 -26.715 2.604 1 21.6 ? N1 FO5 217 A 1 HETATM 7 O O1 FO5 . . . B 2 -6.846 -25.85 5.807 1 31.95 ? O1 FO5 217 A 1 HETATM 8 C C2 FO5 . . . B 2 -14.012 -28.199 1.864 1 22.78 ? C2 FO5 217 A 1 HETATM 9 N N2 FO5 . . . B 2 -5.472 -25.937 6.06 1 34.77 ? N2 FO5 217 A 1 HETATM 10 C C3 FO5 . . . B 2 -9.836 -25.868 1.909 1 22.12 ? C3 FO5 217 A 1 HETATM 11 N N3 FO5 . . . B 2 -5.858 -26.06 3.857 1 29.86 ? N3 FO5 217 A 1 HETATM 12 C C4 FO5 . . . B 2 -8.452 -26.102 2.465 1 21.36 ? C4 FO5 217 A 1 HETATM 13 C C5 FO5 . . . B 2 -8.443 -25.892 3.968 1 25.04 ? C5 FO5 217 A 1 HETATM 14 C C6 FO5 . . . B 2 -9.089 -27.142 4.475 1 22.52 ? C6 FO5 217 A 1 HETATM 15 C C7 FO5 . . . B 2 -10.546 -27.1 4.01 1 20.91 ? C7 FO5 217 A 1 HETATM 16 C C8 FO5 . . . B 2 -7.056 -25.932 4.465 1 28.19 ? C8 FO5 217 A 1 HETATM 17 C C9 FO5 . . . B 2 -4.933 -26.045 4.835 1 30.68 ? C9 FO5 217 A 1 HETATM 18 C C10 FO5 . . . B 2 -3.575 -26.149 4.493 1 34.69 ? C10 FO5 217 A 1 HETATM 19 C C11 FO5 . . . B 2 -2.426 -26.223 5.283 1 36.59 ? C11 FO5 217 A 1 HETATM 20 C C12 FO5 . . . B 2 -1.226 -26.325 4.537 1 36.69 ? C12 FO5 217 A 1 HETATM 21 C C13 FO5 . . . B 2 -1.397 -26.37 3.152 1 36.19 ? C13 FO5 217 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #