data_3TP9 # _model_server_result.job_id 0t_W6VVlJysggPAhnWse0Q _model_server_result.datetime_utc '2024-10-25 20:31:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":472}' # _entry.id 3TP9 # _exptl.entry_id 3TP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TP9 _cell.length_a 169.335 _cell.length_b 169.335 _cell.length_c 77.797 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N TYR 5 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C GLU 70 A GLU 67 1_555 A N MSE 71 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 71 A MSE 68 1_555 A N ALA 72 A ALA 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C VAL 117 A VAL 114 1_555 A N MSE 118 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 118 A MSE 115 1_555 A N HIS 119 A HIS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C PRO 142 A PRO 139 1_555 A N MSE 143 A MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 143 A MSE 140 1_555 A N ALA 144 A ALA 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C GLN 178 A GLN 175 1_555 A N MSE 179 A MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 179 A MSE 176 1_555 A N PHE 180 A PHE 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C ARG 252 A ARG 249 1_555 A N MSE 253 A MSE 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 A C MSE 253 A MSE 250 1_555 A N LYS 254 A LYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 A C ASN 457 A ASN 454 1_555 A N MSE 458 A MSE 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 A C MSE 458 A MSE 455 1_555 A N VAL 459 A VAL 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale15 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale16 B C MSE 4 B MSE 1 1_555 B N TYR 5 B TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale17 B C GLU 70 B GLU 67 1_555 B N MSE 71 B MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 B C MSE 71 B MSE 68 1_555 B N ALA 72 B ALA 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale19 B C VAL 117 B VAL 114 1_555 B N MSE 118 B MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale20 B C MSE 118 B MSE 115 1_555 B N HIS 119 B HIS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 B C PRO 142 B PRO 139 1_555 B N MSE 143 B MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 B C MSE 143 B MSE 140 1_555 B N ALA 144 B ALA 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale23 B C GLN 178 B GLN 175 1_555 B N MSE 179 B MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 B C MSE 179 B MSE 176 1_555 B N PHE 180 B PHE 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale25 B C ARG 252 B ARG 249 1_555 B N MSE 253 B MSE 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale26 B C MSE 253 B MSE 250 1_555 B N LYS 254 B LYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale27 B C ASN 457 B ASN 454 1_555 B N MSE 458 B MSE 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale28 B C MSE 458 B MSE 455 1_555 B N VAL 459 B VAL 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? metalc ? metalc1 B OD2 ASP 149 B ASP 146 1_555 D ZN ZN . B ZN 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc2 A OD2 ASP 149 A ASP 146 1_555 C ZN ZN . A ZN 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc3 A NE2 HIS 59 A HIS 56 1_555 C ZN ZN . A ZN 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc4 B NE2 HIS 59 B HIS 56 1_555 D ZN ZN . B ZN 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc5 B NE2 HIS 123 B HIS 120 1_555 D ZN ZN . B ZN 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 A NE2 HIS 123 A HIS 120 1_555 C ZN ZN . A ZN 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TP9 _atom_sites.fract_transf_matrix[1][1] 0.005905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 472 1 ZN ZN . D 2 ZN B 1 472 2 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 38.89 _atom_site.Cartn_y 11.235 _atom_site.Cartn_z 17.815 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.8 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 472 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #