data_3TPI # _model_server_result.job_id e6PVERSndJLdSEkk-owPTg _model_server_result.datetime_utc '2024-11-23 01:36:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tpi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1017}' # _entry.id 3TPI # _exptl.entry_id 3TPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description VALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TPI _cell.length_a 75.5 _cell.length_b 84.4 _cell.length_c 122.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3,4 A,B,C,D,E,F,G,H,I 3 1,2 B,F,G,I 4 1 A,C,D,E,H 4 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 168.8 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_575 x,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 168.8 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 Z CYS 22 1_555 A SG CYS 143 Z CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf2 A SG CYS 31 Z CYS 42 1_555 A SG CYS 47 Z CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 115 Z CYS 128 1_555 A SG CYS 216 Z CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 122 Z CYS 136 1_555 A SG CYS 189 Z CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf5 A SG CYS 154 Z CYS 168 1_555 A SG CYS 168 Z CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf6 A SG CYS 179 Z CYS 191 1_555 A SG CYS 203 Z CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf7 B SG CYS 5 I CYS 5 1_555 B SG CYS 55 I CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf8 B SG CYS 14 I CYS 14 1_555 B SG CYS 38 I CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? disulf ? disulf9 B SG CYS 30 I CYS 30 1_555 B SG CYS 51 I CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? covale ? covale1 C C ILE . Z ILE 1016 1_555 D N VAL . Z VAL 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? metalc ? metalc1 A OE2 GLU 58 Z GLU 70 1_555 E CA CA . Z CA 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A O ASN 60 Z ASN 72 1_555 E CA CA . Z CA 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 A O VAL 63 Z VAL 75 1_555 E CA CA . Z CA 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 A OE2 GLU 68 Z GLU 80 1_555 E CA CA . Z CA 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc5 E CA CA . Z CA 462 1_555 H O HOH . Z HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc6 E CA CA . Z CA 462 1_555 H O HOH . Z HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id VAL _chem_comp.mon_nstd_flag y _chem_comp.name VALINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA VAL sing 362 n n N H VAL sing 363 n n N H2 VAL sing 364 n n CA C VAL sing 365 n n CA CB VAL sing 366 n n CA HA VAL sing 367 n n C O VAL doub 368 n n C OXT VAL sing 369 n n CB CG1 VAL sing 370 n n CB CG2 VAL sing 371 n n CB HB VAL sing 372 n n CG1 HG11 VAL sing 373 n n CG1 HG12 VAL sing 374 n n CG1 HG13 VAL sing 375 n n CG2 HG21 VAL sing 376 n n CG2 HG22 VAL sing 377 n n CG2 HG23 VAL sing 378 n n OXT HXT VAL sing 379 n n # _atom_sites.entry_id 3TPI _atom_sites.fract_transf_matrix[1][1] 0.013245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ILE Z 1 1016 1016 ILE ILE . D 4 VAL Z 1 1017 1017 VAL VAL . E 5 CA Z 1 462 462 CA CA . F 6 SO4 I 1 59 59 SO4 SO4 . G 6 SO4 I 1 60 60 SO4 SO4 . H 7 HOH Z 1 401 401 HOH HOH . H 7 HOH Z 2 402 402 HOH HOH . H 7 HOH Z 3 403 403 HOH HOH . H 7 HOH Z 4 405 405 HOH HOH . H 7 HOH Z 5 406 406 HOH HOH . H 7 HOH Z 6 407 407 HOH HOH . H 7 HOH Z 7 408 408 HOH HOH . H 7 HOH Z 8 409 409 HOH HOH . H 7 HOH Z 9 410 410 HOH HOH . H 7 HOH Z 10 411 411 HOH HOH . H 7 HOH Z 11 412 412 HOH HOH . H 7 HOH Z 12 414 414 HOH HOH . H 7 HOH Z 13 415 415 HOH HOH . H 7 HOH Z 14 422 422 HOH HOH . H 7 HOH Z 15 426 426 HOH HOH . H 7 HOH Z 16 429 429 HOH HOH . H 7 HOH Z 17 430 430 HOH HOH . H 7 HOH Z 18 431 431 HOH HOH . H 7 HOH Z 19 434 434 HOH HOH . H 7 HOH Z 20 435 435 HOH HOH . H 7 HOH Z 21 436 436 HOH HOH . H 7 HOH Z 22 437 437 HOH HOH . H 7 HOH Z 23 438 438 HOH HOH . H 7 HOH Z 24 439 439 HOH HOH . H 7 HOH Z 25 445 445 HOH HOH . H 7 HOH Z 26 447 447 HOH HOH . H 7 HOH Z 27 448 448 HOH HOH . H 7 HOH Z 28 456 456 HOH HOH . H 7 HOH Z 29 457 457 HOH HOH . H 7 HOH Z 30 463 463 HOH HOH . H 7 HOH Z 31 465 465 HOH HOH . H 7 HOH Z 32 466 466 HOH HOH . H 7 HOH Z 33 469 469 HOH HOH . H 7 HOH Z 34 470 470 HOH HOH . H 7 HOH Z 35 473 473 HOH HOH . H 7 HOH Z 36 475 475 HOH HOH . H 7 HOH Z 37 476 476 HOH HOH . H 7 HOH Z 38 477 477 HOH HOH . H 7 HOH Z 39 479 479 HOH HOH . H 7 HOH Z 40 481 481 HOH HOH . H 7 HOH Z 41 483 483 HOH HOH . H 7 HOH Z 42 487 487 HOH HOH . H 7 HOH Z 43 489 489 HOH HOH . H 7 HOH Z 44 491 491 HOH HOH . H 7 HOH Z 45 495 495 HOH HOH . H 7 HOH Z 46 498 498 HOH HOH . H 7 HOH Z 47 499 499 HOH HOH . H 7 HOH Z 48 502 502 HOH HOH . H 7 HOH Z 49 514 514 HOH HOH . H 7 HOH Z 50 516 516 HOH HOH . H 7 HOH Z 51 519 519 HOH HOH . H 7 HOH Z 52 520 520 HOH HOH . H 7 HOH Z 53 522 522 HOH HOH . H 7 HOH Z 54 523 523 HOH HOH . H 7 HOH Z 55 524 524 HOH HOH . H 7 HOH Z 56 526 526 HOH HOH . H 7 HOH Z 57 527 527 HOH HOH . H 7 HOH Z 58 528 528 HOH HOH . H 7 HOH Z 59 529 529 HOH HOH . H 7 HOH Z 60 530 530 HOH HOH . H 7 HOH Z 61 531 531 HOH HOH . H 7 HOH Z 62 534 534 HOH HOH . H 7 HOH Z 63 540 540 HOH HOH . H 7 HOH Z 64 541 541 HOH HOH . H 7 HOH Z 65 542 542 HOH HOH . H 7 HOH Z 66 543 543 HOH HOH . H 7 HOH Z 67 544 544 HOH HOH . H 7 HOH Z 68 547 547 HOH HOH . H 7 HOH Z 69 549 549 HOH HOH . H 7 HOH Z 70 550 550 HOH HOH . H 7 HOH Z 71 551 551 HOH HOH . H 7 HOH Z 72 552 552 HOH HOH . H 7 HOH Z 73 554 554 HOH HOH . H 7 HOH Z 74 555 555 HOH HOH . H 7 HOH Z 75 556 556 HOH HOH . H 7 HOH Z 76 559 559 HOH HOH . H 7 HOH Z 77 560 560 HOH HOH . H 7 HOH Z 78 561 561 HOH HOH . H 7 HOH Z 79 562 562 HOH HOH . H 7 HOH Z 80 563 563 HOH HOH . H 7 HOH Z 81 566 566 HOH HOH . H 7 HOH Z 82 570 570 HOH HOH . H 7 HOH Z 83 571 571 HOH HOH . H 7 HOH Z 84 572 572 HOH HOH . H 7 HOH Z 85 573 573 HOH HOH . H 7 HOH Z 86 574 574 HOH HOH . H 7 HOH Z 87 575 575 HOH HOH . H 7 HOH Z 88 576 576 HOH HOH . H 7 HOH Z 89 577 577 HOH HOH . H 7 HOH Z 90 582 582 HOH HOH . H 7 HOH Z 91 583 583 HOH HOH . H 7 HOH Z 92 585 585 HOH HOH . H 7 HOH Z 93 591 591 HOH HOH . H 7 HOH Z 94 592 592 HOH HOH . H 7 HOH Z 95 593 593 HOH HOH . H 7 HOH Z 96 594 594 HOH HOH . H 7 HOH Z 97 595 595 HOH HOH . H 7 HOH Z 98 597 597 HOH HOH . H 7 HOH Z 99 598 598 HOH HOH . H 7 HOH Z 100 599 599 HOH HOH . H 7 HOH Z 101 601 601 HOH HOH . H 7 HOH Z 102 602 602 HOH HOH . H 7 HOH Z 103 701 701 HOH HOH . H 7 HOH Z 104 702 702 HOH HOH . H 7 HOH Z 105 703 703 HOH HOH . H 7 HOH Z 106 704 704 HOH HOH . H 7 HOH Z 107 705 705 HOH HOH . H 7 HOH Z 108 706 706 HOH HOH . H 7 HOH Z 109 708 708 HOH HOH . H 7 HOH Z 110 709 709 HOH HOH . H 7 HOH Z 111 710 710 HOH HOH . H 7 HOH Z 112 711 711 HOH HOH . H 7 HOH Z 113 712 712 HOH HOH . H 7 HOH Z 114 713 713 HOH HOH . H 7 HOH Z 115 714 714 HOH HOH . H 7 HOH Z 116 715 715 HOH HOH . I 7 HOH I 1 400 400 HOH HOH . I 7 HOH I 2 404 404 HOH HOH . I 7 HOH I 3 413 413 HOH HOH . I 7 HOH I 4 416 416 HOH HOH . I 7 HOH I 5 417 417 HOH HOH . I 7 HOH I 6 419 419 HOH HOH . I 7 HOH I 7 421 421 HOH HOH . I 7 HOH I 8 423 423 HOH HOH . I 7 HOH I 9 425 425 HOH HOH . I 7 HOH I 10 450 450 HOH HOH . I 7 HOH I 11 455 455 HOH HOH . I 7 HOH I 12 501 501 HOH HOH . I 7 HOH I 13 503 503 HOH HOH . I 7 HOH I 14 505 505 HOH HOH . I 7 HOH I 15 507 507 HOH HOH . I 7 HOH I 16 508 508 HOH HOH . I 7 HOH I 17 511 511 HOH HOH . I 7 HOH I 18 512 512 HOH HOH . I 7 HOH I 19 515 515 HOH HOH . I 7 HOH I 20 532 532 HOH HOH . I 7 HOH I 21 533 533 HOH HOH . I 7 HOH I 22 536 536 HOH HOH . I 7 HOH I 23 537 537 HOH HOH . I 7 HOH I 24 538 538 HOH HOH . I 7 HOH I 25 564 564 HOH HOH . I 7 HOH I 26 565 565 HOH HOH . I 7 HOH I 27 568 568 HOH HOH . I 7 HOH I 28 569 569 HOH HOH . I 7 HOH I 29 587 587 HOH HOH . I 7 HOH I 30 588 588 HOH HOH . I 7 HOH I 31 589 589 HOH HOH . I 7 HOH I 32 590 590 HOH HOH . I 7 HOH I 33 600 600 HOH HOH . I 7 HOH I 34 603 603 HOH HOH . I 7 HOH I 35 700 700 HOH HOH . I 7 HOH I 36 707 707 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N VAL . . . D 4 22.121 65.461 13.567 1 26.46 ? N VAL 1017 Z 1 HETATM 2 C CA VAL . . . D 4 23.574 65.453 13.168 1 26.46 ? CA VAL 1017 Z 1 HETATM 3 C C VAL . . . D 4 24.325 64.21 13.664 1 26.46 ? C VAL 1017 Z 1 HETATM 4 O O VAL . . . D 4 24.141 63.823 14.856 1 26.46 ? O VAL 1017 Z 1 HETATM 5 C CB VAL . . . D 4 24.314 66.596 13.801 1 26.46 ? CB VAL 1017 Z 1 HETATM 6 C CG1 VAL . . . D 4 25.732 66.58 13.231 1 20.78 ? CG1 VAL 1017 Z 1 HETATM 7 C CG2 VAL . . . D 4 23.631 67.949 13.558 1 20.78 ? CG2 VAL 1017 Z 1 HETATM 8 O OXT VAL . . . D 4 24.809 63.389 12.835 1 31.3 ? OXT VAL 1017 Z 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #