data_3TPK
#
_model_server_result.job_id            -KzQ8eWIF4VoZjrpr_7PfA 
_model_server_result.datetime_utc      '2025-03-05 19:53:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":133}' 
#
_entry.id    3TPK 
#
_exptl.entry_id    3TPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TPK 
_cell.length_a            30.921 
_cell.length_b            38.659 
_cell.length_c            94.412 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             26 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              22 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             100 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              96 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.064 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     3TPK 
_atom_sites.fract_transf_matrix[1][1]    0.03234 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025867 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BEN A 1 133 1 BEN BEN . 
C 3 EDO A 1 134 1 EDO EDO . 
D 4 HOH A 1 135 135 HOH HOH . 
D 4 HOH A 2 136 1 HOH HOH . 
D 4 HOH A 3 137 2 HOH HOH . 
D 4 HOH A 4 138 138 HOH HOH . 
D 4 HOH A 5 139 3 HOH HOH . 
D 4 HOH A 6 140 140 HOH HOH . 
D 4 HOH A 7 141 141 HOH HOH . 
D 4 HOH A 8 142 142 HOH HOH . 
D 4 HOH A 9 143 143 HOH HOH . 
D 4 HOH A 10 144 4 HOH HOH . 
D 4 HOH A 11 145 5 HOH HOH . 
D 4 HOH A 12 146 6 HOH HOH . 
D 4 HOH A 13 147 7 HOH HOH . 
D 4 HOH A 14 148 8 HOH HOH . 
D 4 HOH A 15 149 9 HOH HOH . 
D 4 HOH A 16 150 10 HOH HOH . 
D 4 HOH A 17 151 11 HOH HOH . 
D 4 HOH A 18 152 12 HOH HOH . 
D 4 HOH A 19 153 13 HOH HOH . 
D 4 HOH A 20 154 14 HOH HOH . 
D 4 HOH A 21 155 16 HOH HOH . 
D 4 HOH A 22 156 17 HOH HOH . 
D 4 HOH A 23 157 18 HOH HOH . 
D 4 HOH A 24 158 19 HOH HOH . 
D 4 HOH A 25 159 20 HOH HOH . 
D 4 HOH A 26 160 21 HOH HOH . 
D 4 HOH A 27 161 22 HOH HOH . 
D 4 HOH A 28 162 24 HOH HOH . 
D 4 HOH A 29 163 25 HOH HOH . 
D 4 HOH A 30 164 27 HOH HOH . 
D 4 HOH A 31 165 28 HOH HOH . 
D 4 HOH A 32 166 29 HOH HOH . 
D 4 HOH A 33 167 30 HOH HOH . 
D 4 HOH A 34 168 31 HOH HOH . 
D 4 HOH A 35 169 32 HOH HOH . 
D 4 HOH A 36 170 33 HOH HOH . 
D 4 HOH A 37 171 35 HOH HOH . 
D 4 HOH A 38 172 36 HOH HOH . 
D 4 HOH A 39 173 37 HOH HOH . 
D 4 HOH A 40 174 38 HOH HOH . 
D 4 HOH A 41 175 40 HOH HOH . 
D 4 HOH A 42 176 41 HOH HOH . 
D 4 HOH A 43 177 42 HOH HOH . 
D 4 HOH A 44 178 43 HOH HOH . 
D 4 HOH A 45 179 44 HOH HOH . 
D 4 HOH A 46 180 45 HOH HOH . 
D 4 HOH A 47 181 46 HOH HOH . 
D 4 HOH A 48 182 47 HOH HOH . 
D 4 HOH A 49 183 50 HOH HOH . 
D 4 HOH A 50 184 51 HOH HOH . 
D 4 HOH A 51 185 52 HOH HOH . 
D 4 HOH A 52 186 53 HOH HOH . 
D 4 HOH A 53 187 54 HOH HOH . 
D 4 HOH A 54 188 55 HOH HOH . 
D 4 HOH A 55 189 56 HOH HOH . 
D 4 HOH A 56 190 57 HOH HOH . 
D 4 HOH A 57 191 58 HOH HOH . 
D 4 HOH A 58 192 59 HOH HOH . 
D 4 HOH A 59 193 60 HOH HOH . 
D 4 HOH A 60 194 62 HOH HOH . 
D 4 HOH A 61 195 63 HOH HOH . 
D 4 HOH A 62 196 64 HOH HOH . 
D 4 HOH A 63 197 65 HOH HOH . 
D 4 HOH A 64 198 66 HOH HOH . 
D 4 HOH A 65 199 69 HOH HOH . 
D 4 HOH A 66 200 70 HOH HOH . 
D 4 HOH A 67 201 71 HOH HOH . 
D 4 HOH A 68 202 72 HOH HOH . 
D 4 HOH A 69 203 73 HOH HOH . 
D 4 HOH A 70 204 74 HOH HOH . 
D 4 HOH A 71 205 75 HOH HOH . 
D 4 HOH A 72 206 76 HOH HOH . 
D 4 HOH A 73 207 77 HOH HOH . 
D 4 HOH A 74 208 78 HOH HOH . 
D 4 HOH A 75 209 80 HOH HOH . 
D 4 HOH A 76 210 81 HOH HOH . 
D 4 HOH A 77 211 82 HOH HOH . 
D 4 HOH A 78 212 83 HOH HOH . 
D 4 HOH A 79 213 84 HOH HOH . 
D 4 HOH A 80 214 85 HOH HOH . 
D 4 HOH A 81 215 86 HOH HOH . 
D 4 HOH A 82 216 87 HOH HOH . 
D 4 HOH A 83 217 89 HOH HOH . 
D 4 HOH A 84 218 90 HOH HOH . 
D 4 HOH A 85 219 91 HOH HOH . 
D 4 HOH A 86 220 92 HOH HOH . 
D 4 HOH A 87 221 93 HOH HOH . 
D 4 HOH A 88 222 94 HOH HOH . 
D 4 HOH A 89 223 96 HOH HOH . 
D 4 HOH A 90 224 97 HOH HOH . 
D 4 HOH A 91 225 98 HOH HOH . 
D 4 HOH A 92 226 99 HOH HOH . 
D 4 HOH A 93 227 100 HOH HOH . 
D 4 HOH A 94 228 102 HOH HOH . 
D 4 HOH A 95 229 103 HOH HOH . 
D 4 HOH A 96 230 104 HOH HOH . 
D 4 HOH A 97 231 105 HOH HOH . 
D 4 HOH A 98 232 106 HOH HOH . 
D 4 HOH A 99 233 107 HOH HOH . 
D 4 HOH A 100 234 112 HOH HOH . 
D 4 HOH A 101 235 113 HOH HOH . 
D 4 HOH A 102 236 114 HOH HOH . 
D 4 HOH A 103 237 115 HOH HOH . 
D 4 HOH A 104 238 116 HOH HOH . 
D 4 HOH A 105 239 118 HOH HOH . 
D 4 HOH A 106 240 119 HOH HOH . 
D 4 HOH A 107 241 124 HOH HOH . 
D 4 HOH A 108 242 125 HOH HOH . 
D 4 HOH A 109 243 129 HOH HOH . 
D 4 HOH A 110 244 130 HOH HOH . 
D 4 HOH A 111 245 131 HOH HOH . 
D 4 HOH A 112 246 132 HOH HOH . 
D 4 HOH A 113 247 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . B 2 -0.076 -0.171 -16.623 1 10.5 ? C1 BEN 133 A 1 
HETATM 2 C C2 BEN . . . B 2 0.481 -0.319 -15.31 1 12.31 ? C2 BEN 133 A 1 
HETATM 3 C C3 BEN . . . B 2 0.032 0.616 -14.353 1 14.26 ? C3 BEN 133 A 1 
HETATM 4 C C4 BEN . . . B 2 -0.87 1.628 -14.651 1 15.16 ? C4 BEN 133 A 1 
HETATM 5 C C5 BEN . . . B 2 -1.387 1.744 -15.944 1 16.46 ? C5 BEN 133 A 1 
HETATM 6 C C6 BEN . . . B 2 -0.953 0.851 -16.936 1 13.44 ? C6 BEN 133 A 1 
HETATM 7 C C BEN . . . B 2 0.341 -1.087 -17.622 1 12.63 ? C BEN 133 A 1 
HETATM 8 N N1 BEN . . . B 2 0.674 -2.337 -17.316 1 14.51 ? N1 BEN 133 A 1 
HETATM 9 N N2 BEN . . . B 2 0.444 -0.743 -18.94 1 15.29 ? N2 BEN 133 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           9 
#