data_3TPN # _model_server_result.job_id jAxHFcXxYo6UQGPK_sYx2g _model_server_result.datetime_utc '2024-11-14 06:21:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tpn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":154}' # _entry.id 3TPN # _exptl.entry_id 3TPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TPN _cell.length_a 60.333 _cell.length_b 60.333 _cell.length_c 64.519 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -y+2,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 60.333 104.499821 0 3 'crystal symmetry operation' 3_575 -x+y,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -60.333 104.499821 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 44 A CYS 44 1_555 E S1 DTT . A DTT 154 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc1 F O HOH . A HOH 235 1_555 C MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 F O HOH . A HOH 241 1_555 C MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 B O2A DUP . A DUP 777 1_555 C MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc4 B O1G DUP . A DUP 777 1_555 C MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 B O2B DUP . A DUP 777 1_555 C MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 3TPN _atom_sites.fract_transf_matrix[1][1] 0.016575 _atom_sites.fract_transf_matrix[1][2] 0.009569 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015499 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DUP A 1 777 777 DUP DUP . C 3 MG A 1 999 999 MG MG . D 4 TRS A 1 153 1 TRS TRS . E 5 DTT A 1 154 1 DTT DTT . F 6 HOH A 1 155 1 HOH HOH . F 6 HOH A 2 156 2 HOH HOH . F 6 HOH A 3 157 3 HOH HOH . F 6 HOH A 4 158 4 HOH HOH . F 6 HOH A 5 159 5 HOH HOH . F 6 HOH A 6 160 6 HOH HOH . F 6 HOH A 7 161 7 HOH HOH . F 6 HOH A 8 162 8 HOH HOH . F 6 HOH A 9 163 10 HOH HOH . F 6 HOH A 10 164 11 HOH HOH . F 6 HOH A 11 165 12 HOH HOH . F 6 HOH A 12 166 13 HOH HOH . F 6 HOH A 13 167 15 HOH HOH . F 6 HOH A 14 168 16 HOH HOH . F 6 HOH A 15 169 17 HOH HOH . F 6 HOH A 16 170 18 HOH HOH . F 6 HOH A 17 171 19 HOH HOH . F 6 HOH A 18 172 20 HOH HOH . F 6 HOH A 19 173 21 HOH HOH . F 6 HOH A 20 174 22 HOH HOH . F 6 HOH A 21 175 23 HOH HOH . F 6 HOH A 22 176 24 HOH HOH . F 6 HOH A 23 177 25 HOH HOH . F 6 HOH A 24 178 26 HOH HOH . F 6 HOH A 25 179 27 HOH HOH . F 6 HOH A 26 180 28 HOH HOH . F 6 HOH A 27 181 29 HOH HOH . F 6 HOH A 28 182 30 HOH HOH . F 6 HOH A 29 183 31 HOH HOH . F 6 HOH A 30 184 32 HOH HOH . F 6 HOH A 31 185 33 HOH HOH . F 6 HOH A 32 186 34 HOH HOH . F 6 HOH A 33 187 35 HOH HOH . F 6 HOH A 34 188 36 HOH HOH . F 6 HOH A 35 189 37 HOH HOH . F 6 HOH A 36 190 38 HOH HOH . F 6 HOH A 37 191 39 HOH HOH . F 6 HOH A 38 192 40 HOH HOH . F 6 HOH A 39 193 41 HOH HOH . F 6 HOH A 40 194 42 HOH HOH . F 6 HOH A 41 195 44 HOH HOH . F 6 HOH A 42 196 45 HOH HOH . F 6 HOH A 43 197 46 HOH HOH . F 6 HOH A 44 198 47 HOH HOH . F 6 HOH A 45 199 48 HOH HOH . F 6 HOH A 46 200 49 HOH HOH . F 6 HOH A 47 201 50 HOH HOH . F 6 HOH A 48 202 51 HOH HOH . F 6 HOH A 49 203 52 HOH HOH . F 6 HOH A 50 204 53 HOH HOH . F 6 HOH A 51 205 54 HOH HOH . F 6 HOH A 52 206 55 HOH HOH . F 6 HOH A 53 207 56 HOH HOH . F 6 HOH A 54 208 57 HOH HOH . F 6 HOH A 55 209 60 HOH HOH . F 6 HOH A 56 210 61 HOH HOH . F 6 HOH A 57 211 62 HOH HOH . F 6 HOH A 58 212 63 HOH HOH . F 6 HOH A 59 213 64 HOH HOH . F 6 HOH A 60 214 65 HOH HOH . F 6 HOH A 61 215 66 HOH HOH . F 6 HOH A 62 216 67 HOH HOH . F 6 HOH A 63 217 68 HOH HOH . F 6 HOH A 64 218 69 HOH HOH . F 6 HOH A 65 219 70 HOH HOH . F 6 HOH A 66 220 71 HOH HOH . F 6 HOH A 67 221 72 HOH HOH . F 6 HOH A 68 222 73 HOH HOH . F 6 HOH A 69 223 74 HOH HOH . F 6 HOH A 70 224 75 HOH HOH . F 6 HOH A 71 225 77 HOH HOH . F 6 HOH A 72 226 79 HOH HOH . F 6 HOH A 73 227 80 HOH HOH . F 6 HOH A 74 228 81 HOH HOH . F 6 HOH A 75 229 82 HOH HOH . F 6 HOH A 76 230 83 HOH HOH . F 6 HOH A 77 231 84 HOH HOH . F 6 HOH A 78 232 85 HOH HOH . F 6 HOH A 79 233 86 HOH HOH . F 6 HOH A 80 234 87 HOH HOH . F 6 HOH A 81 235 88 HOH HOH . F 6 HOH A 82 236 89 HOH HOH . F 6 HOH A 83 237 90 HOH HOH . F 6 HOH A 84 238 91 HOH HOH . F 6 HOH A 85 239 92 HOH HOH . F 6 HOH A 86 240 93 HOH HOH . F 6 HOH A 87 241 94 HOH HOH . F 6 HOH A 88 242 96 HOH HOH . F 6 HOH A 89 243 97 HOH HOH . F 6 HOH A 90 244 98 HOH HOH . F 6 HOH A 91 245 100 HOH HOH . F 6 HOH A 92 246 101 HOH HOH . F 6 HOH A 93 247 102 HOH HOH . F 6 HOH A 94 248 104 HOH HOH . F 6 HOH A 95 249 106 HOH HOH . F 6 HOH A 96 250 107 HOH HOH . F 6 HOH A 97 251 108 HOH HOH . F 6 HOH A 98 252 109 HOH HOH . F 6 HOH A 99 253 110 HOH HOH . F 6 HOH A 100 254 111 HOH HOH . F 6 HOH A 101 255 112 HOH HOH . F 6 HOH A 102 256 113 HOH HOH . F 6 HOH A 103 257 114 HOH HOH . F 6 HOH A 104 258 115 HOH HOH . F 6 HOH A 105 259 116 HOH HOH . F 6 HOH A 106 260 117 HOH HOH . F 6 HOH A 107 261 118 HOH HOH . F 6 HOH A 108 262 119 HOH HOH . F 6 HOH A 109 263 120 HOH HOH . F 6 HOH A 110 264 121 HOH HOH . F 6 HOH A 111 265 122 HOH HOH . F 6 HOH A 112 266 123 HOH HOH . F 6 HOH A 113 267 124 HOH HOH . F 6 HOH A 114 268 125 HOH HOH . F 6 HOH A 115 269 126 HOH HOH . F 6 HOH A 116 270 127 HOH HOH . F 6 HOH A 117 271 129 HOH HOH . F 6 HOH A 118 272 130 HOH HOH . F 6 HOH A 119 273 135 HOH HOH . F 6 HOH A 120 274 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . E 5 10.097 48.696 28.079 0.6 25.87 ? S1 DTT 154 A 1 HETATM 2 C C1 DTT . . . E 5 10.176 47.489 29.437 0.6 30.88 ? C1 DTT 154 A 1 HETATM 3 C C2 DTT . . . E 5 9.684 46.139 28.924 0.6 34.33 ? C2 DTT 154 A 1 HETATM 4 O O2 DTT . . . E 5 10.814 45.343 28.659 0.6 41.35 ? O2 DTT 154 A 1 HETATM 5 C C3 DTT . . . E 5 8.765 45.365 29.854 0.6 29.3 ? C3 DTT 154 A 1 HETATM 6 O O3 DTT . . . E 5 9.45 44.3 30.472 0.6 41.56 ? O3 DTT 154 A 1 HETATM 7 C C4 DTT . . . E 5 7.642 44.687 29.081 0.6 30.05 ? C4 DTT 154 A 1 HETATM 8 S S4 DTT . . . E 5 6.132 44.817 30.061 0.6 44.39 ? S4 DTT 154 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #