data_3TPQ # _model_server_result.job_id crVjZinjCVOZu5yYIv5iUg _model_server_result.datetime_utc '2024-12-11 03:19:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1377}' # _entry.id 3TPQ # _exptl.entry_id 3TPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TPQ _cell.length_a 180.737 _cell.length_b 180.737 _cell.length_c 382.279 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O1B ATP . A ATP 1377 1_555 H CA CA . A CA 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 G O1G ATP . A ATP 1377 1_555 H CA CA . A CA 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc3 I O1B ATP . B ATP 1377 1_555 J CA CA . B CA 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc4 I O1G ATP . B ATP 1377 1_555 J CA CA . B CA 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc5 K O1G ATP . C ATP 1377 1_555 L CA CA . C CA 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc6 K O1B ATP . C ATP 1377 1_555 L CA CA . C CA 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc7 M O1G ATP . D ATP 1377 1_555 N CA CA . D CA 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc8 M O1B ATP . D ATP 1377 1_555 N CA CA . D CA 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc9 O O1G ATP . E ATP 1377 1_555 P CA CA . E CA 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc10 O O1B ATP . E ATP 1377 1_555 P CA CA . E CA 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3TPQ _atom_sites.fract_transf_matrix[1][1] 0.005533 _atom_sites.fract_transf_matrix[1][2] 0.003194 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ATP A 1 1377 1377 ATP ATP . H 4 CA A 1 1378 1378 CA CA . I 3 ATP B 1 1377 1377 ATP ATP . J 4 CA B 1 1378 1378 CA CA . K 3 ATP C 1 1377 1377 ATP ATP . L 4 CA C 1 1378 1378 CA CA . M 3 ATP D 1 1377 1377 ATP ATP . N 4 CA D 1 1378 1378 CA CA . O 3 ATP E 1 1377 1377 ATP ATP . P 4 CA E 1 1378 1378 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 3 -6.627 -22.763 -13.958 1 124.04 ? PG ATP 1377 C 1 HETATM 2 O O1G ATP . . . K 3 -6.338 -24.055 -13.194 1 117.83 ? O1G ATP 1377 C 1 HETATM 3 O O2G ATP . . . K 3 -7.593 -22.939 -15.123 1 109.41 ? O2G ATP 1377 C 1 HETATM 4 O O3G ATP . . . K 3 -5.417 -21.901 -14.233 1 105.18 ? O3G ATP 1377 C 1 HETATM 5 P PB ATP . . . K 3 -7.487 -21.793 -11.42 1 137.39 ? PB ATP 1377 C 1 HETATM 6 O O1B ATP . . . K 3 -6.529 -22.813 -10.826 1 149.51 ? O1B ATP 1377 C 1 HETATM 7 O O2B ATP . . . K 3 -7.402 -20.376 -10.945 1 99.63 ? O2B ATP 1377 C 1 HETATM 8 O O3B ATP . . . K 3 -7.417 -21.738 -13.021 1 118.3 ? O3B ATP 1377 C 1 HETATM 9 P PA ATP . . . K 3 -9.636 -23.079 -10.112 1 114.02 ? PA ATP 1377 C 1 HETATM 10 O O1A ATP . . . K 3 -9.093 -22.324 -8.916 1 98.37 ? O1A ATP 1377 C 1 HETATM 11 O O2A ATP . . . K 3 -9.391 -24.554 -10.236 1 114.16 ? O2A ATP 1377 C 1 HETATM 12 O O3A ATP . . . K 3 -9.018 -22.306 -11.368 1 121.16 ? O3A ATP 1377 C 1 HETATM 13 O O5' ATP . . . K 3 -11.211 -22.857 -10.379 1 118.6 ? O5' ATP 1377 C 1 HETATM 14 C C5' ATP . . . K 3 -11.728 -21.525 -10.422 1 147.99 ? C5' ATP 1377 C 1 HETATM 15 C C4' ATP . . . K 3 -12.97 -21.422 -11.3 1 150.73 ? C4' ATP 1377 C 1 HETATM 16 O O4' ATP . . . K 3 -13.928 -22.38 -10.843 1 144.34 ? O4' ATP 1377 C 1 HETATM 17 C C3' ATP . . . K 3 -13.649 -20.05 -11.214 1 154.6 ? C3' ATP 1377 C 1 HETATM 18 O O3' ATP . . . K 3 -14.091 -19.642 -12.524 1 148.46 ? O3' ATP 1377 C 1 HETATM 19 C C2' ATP . . . K 3 -14.846 -20.27 -10.312 1 148.88 ? C2' ATP 1377 C 1 HETATM 20 O O2' ATP . . . K 3 -15.979 -19.471 -10.665 1 163.13 ? O2' ATP 1377 C 1 HETATM 21 C C1' ATP . . . K 3 -15.172 -21.726 -10.576 1 138 ? C1' ATP 1377 C 1 HETATM 22 N N9 ATP . . . K 3 -15.886 -22.323 -9.426 1 139.73 ? N9 ATP 1377 C 1 HETATM 23 C C8 ATP . . . K 3 -15.549 -22.265 -8.115 1 130.45 ? C8 ATP 1377 C 1 HETATM 24 N N7 ATP . . . K 3 -16.461 -22.943 -7.358 1 132.3 ? N7 ATP 1377 C 1 HETATM 25 C C5 ATP . . . K 3 -17.407 -23.452 -8.192 1 137 ? C5 ATP 1377 C 1 HETATM 26 C C6 ATP . . . K 3 -18.661 -24.27 -8.08 1 125.64 ? C6 ATP 1377 C 1 HETATM 27 N N6 ATP . . . K 3 -19.139 -24.719 -6.897 1 128.36 ? N6 ATP 1377 C 1 HETATM 28 N N1 ATP . . . K 3 -19.339 -24.566 -9.214 1 123.23 ? N1 ATP 1377 C 1 HETATM 29 C C2 ATP . . . K 3 -18.92 -24.128 -10.424 1 126.73 ? C2 ATP 1377 C 1 HETATM 30 N N3 ATP . . . K 3 -17.805 -23.39 -10.624 1 137.22 ? N3 ATP 1377 C 1 HETATM 31 C C4 ATP . . . K 3 -17.021 -23.023 -9.56 1 146.21 ? C4 ATP 1377 C 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 385 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #