data_3TPR
#
_model_server_result.job_id            IK8P3OytnbUp0iCfy4IGjw 
_model_server_result.datetime_utc      '2024-11-24 00:35:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tpr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":400}' 
#
_entry.id    3TPR 
#
_exptl.entry_id    3TPR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              578.722 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-[(1S,2R)-1-BENZYL-3-(CYCLOPROPYLAMINO)-2-HYDROXYPROPYL]-5-[METHYL(METHYLSULFONYL)AMINO]-N'-[(1R)-1-PHENYLETHYL]ISOPHTHALAMIDE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3TPR 
_cell.length_a            104.195 
_cell.length_b            104.195 
_cell.length_c            169.647 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TPR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 195 A CYS 155 1_555 A SG CYS 399 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 A SG CYS 257 A CYS 217 1_555 A SG CYS 422 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
disulf ? disulf3 A SG CYS 309 A CYS 269 1_555 A SG CYS 359 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'C31 H38 N4 O5 S' 
_chem_comp.formula_weight    578.722 
_chem_comp.id                5HA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-[(1S,2R)-1-BENZYL-3-(CYCLOPROPYLAMINO)-2-HYDROXYPROPYL]-5-[METHYL(METHYLSULFONYL)AMINO]-N'-[(1R)-1-PHENYLETHYL]ISOPHTHALAMIDE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 5HA sing 1 n n 
C1 C3 5HA sing 2 n n 
C1 H11 5HA sing 3 n n 
C1 H12A 5HA sing 4 n n 
C2 C3 5HA sing 5 n n 
C2 N1 5HA sing 6 n n 
C2 H2 5HA sing 7 n n 
C3 H31A 5HA sing 8 n n 
C3 H32A 5HA sing 9 n n 
N1 C4 5HA sing 10 n n 
N1 HN1 5HA sing 11 n n 
C4 C5 5HA sing 12 n n 
C4 H41 5HA sing 13 n n 
C4 H42 5HA sing 14 n n 
C5 C6 5HA sing 15 n n 
C5 O3 5HA sing 16 n n 
C5 H5 5HA sing 17 n n 
C6 N2 5HA sing 18 n n 
C6 C8 5HA sing 19 n n 
C6 H6 5HA sing 20 n n 
N2 C7 5HA sing 21 n n 
N2 HN2 5HA sing 22 n n 
C7 O2 5HA doub 23 n n 
C7 C9 5HA sing 24 n n 
O3 HO3 5HA sing 25 n n 
C8 C29 5HA sing 26 n n 
C8 H81 5HA sing 27 n n 
C8 H82 5HA sing 28 n n 
C9 C10 5HA sing 29 n y 
C9 C14 5HA doub 30 n y 
C10 C11 5HA doub 31 n y 
C10 H10 5HA sing 32 n n 
C11 C12 5HA sing 33 n y 
C11 C15 5HA sing 34 n n 
C12 C13 5HA doub 35 n y 
C12 H12 5HA sing 36 n n 
C13 C14 5HA sing 37 n y 
C13 N3 5HA sing 38 n n 
C14 H14 5HA sing 39 n n 
C15 O4 5HA doub 40 n n 
C15 N4 5HA sing 41 n n 
N3 C16 5HA sing 42 n n 
N3 S1 5HA sing 43 n n 
C16 H161 5HA sing 44 n n 
C16 H162 5HA sing 45 n n 
C16 H163 5HA sing 46 n n 
S1 C23 5HA sing 47 n n 
S1 O5 5HA doub 48 n n 
S1 O6 5HA doub 49 n n 
C23 H231 5HA sing 50 n n 
C23 H232 5HA sing 51 n n 
C23 H233 5HA sing 52 n n 
C24 C25 5HA doub 53 n y 
C24 C29 5HA sing 54 n y 
C24 H24 5HA sing 55 n n 
C25 C26 5HA sing 56 n y 
C25 H25 5HA sing 57 n n 
C26 C27 5HA doub 58 n y 
C26 H26 5HA sing 59 n n 
C27 C28 5HA sing 60 n y 
C27 H27 5HA sing 61 n n 
C28 C29 5HA doub 62 n y 
C28 H28 5HA sing 63 n n 
N4 C17 5HA sing 64 n n 
N4 HN4 5HA sing 65 n n 
C17 C18 5HA sing 66 n n 
C17 C30 5HA sing 67 n n 
C17 H17 5HA sing 68 n n 
C18 H181 5HA sing 69 n n 
C18 H182 5HA sing 70 n n 
C18 H183 5HA sing 71 n n 
C30 C31 5HA sing 72 n y 
C30 C35 5HA doub 73 n y 
C31 C32 5HA doub 74 n y 
C31 H31 5HA sing 75 n n 
C32 C33 5HA sing 76 n y 
C32 H32 5HA sing 77 n n 
C33 C34 5HA doub 78 n y 
C33 H33 5HA sing 79 n n 
C34 C35 5HA sing 80 n y 
C34 H34 5HA sing 81 n n 
C35 H35 5HA sing 82 n n 
#
_atom_sites.entry_id                     3TPR 
_atom_sites.fract_transf_matrix[1][1]    0.009597 
_atom_sites.fract_transf_matrix[1][2]    0.005541 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011082 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 5HA A 1 400 400 5HA CIV . 
C 3 CL A 1 394 1 CL CL . 
D 4 HOH A 1 395 1 HOH HOH . 
D 4 HOH A 2 396 2 HOH HOH . 
D 4 HOH A 3 397 3 HOH HOH . 
D 4 HOH A 4 398 4 HOH HOH . 
D 4 HOH A 5 399 7 HOH HOH . 
D 4 HOH A 6 401 8 HOH HOH . 
D 4 HOH A 7 402 10 HOH HOH . 
D 4 HOH A 8 403 12 HOH HOH . 
D 4 HOH A 9 404 13 HOH HOH . 
D 4 HOH A 10 405 14 HOH HOH . 
D 4 HOH A 11 406 16 HOH HOH . 
D 4 HOH A 12 407 17 HOH HOH . 
D 4 HOH A 13 408 19 HOH HOH . 
D 4 HOH A 14 409 24 HOH HOH . 
D 4 HOH A 15 410 27 HOH HOH . 
D 4 HOH A 16 411 28 HOH HOH . 
D 4 HOH A 17 412 30 HOH HOH . 
D 4 HOH A 18 413 34 HOH HOH . 
D 4 HOH A 19 414 36 HOH HOH . 
D 4 HOH A 20 415 38 HOH HOH . 
D 4 HOH A 21 416 54 HOH HOH . 
D 4 HOH A 22 417 68 HOH HOH . 
D 4 HOH A 23 418 71 HOH HOH . 
D 4 HOH A 24 419 78 HOH HOH . 
D 4 HOH A 25 420 80 HOH HOH . 
D 4 HOH A 26 421 84 HOH HOH . 
D 4 HOH A 27 422 85 HOH HOH . 
D 4 HOH A 28 423 87 HOH HOH . 
D 4 HOH A 29 424 95 HOH HOH . 
D 4 HOH A 30 425 97 HOH HOH . 
D 4 HOH A 31 426 100 HOH HOH . 
D 4 HOH A 32 427 105 HOH HOH . 
D 4 HOH A 33 428 108 HOH HOH . 
D 4 HOH A 34 429 110 HOH HOH . 
D 4 HOH A 35 430 114 HOH HOH . 
D 4 HOH A 36 431 118 HOH HOH . 
D 4 HOH A 37 432 119 HOH HOH . 
D 4 HOH A 38 433 126 HOH HOH . 
D 4 HOH A 39 434 127 HOH HOH . 
D 4 HOH A 40 435 129 HOH HOH . 
D 4 HOH A 41 436 140 HOH HOH . 
D 4 HOH A 42 437 150 HOH HOH . 
D 4 HOH A 43 438 153 HOH HOH . 
D 4 HOH A 44 439 154 HOH HOH . 
D 4 HOH A 45 440 155 HOH HOH . 
D 4 HOH A 46 441 156 HOH HOH . 
D 4 HOH A 47 442 157 HOH HOH . 
D 4 HOH A 48 443 158 HOH HOH . 
D 4 HOH A 49 444 159 HOH HOH . 
D 4 HOH A 50 445 162 HOH HOH . 
D 4 HOH A 51 446 163 HOH HOH . 
D 4 HOH A 52 447 166 HOH HOH . 
D 4 HOH A 53 448 167 HOH HOH . 
D 4 HOH A 54 449 168 HOH HOH . 
D 4 HOH A 55 450 175 HOH HOH . 
D 4 HOH A 56 451 179 HOH HOH . 
D 4 HOH A 57 452 185 HOH HOH . 
D 4 HOH A 58 453 186 HOH HOH . 
D 4 HOH A 59 454 188 HOH HOH . 
D 4 HOH A 60 455 201 HOH HOH . 
D 4 HOH A 61 456 205 HOH HOH . 
D 4 HOH A 62 457 208 HOH HOH . 
D 4 HOH A 63 458 220 HOH HOH . 
D 4 HOH A 64 459 222 HOH HOH . 
D 4 HOH A 65 460 225 HOH HOH . 
D 4 HOH A 66 461 227 HOH HOH . 
D 4 HOH A 67 462 237 HOH HOH . 
D 4 HOH A 68 463 244 HOH HOH . 
D 4 HOH A 69 464 254 HOH HOH . 
D 4 HOH A 70 465 313 HOH HOH . 
D 4 HOH A 71 466 314 HOH HOH . 
D 4 HOH A 72 467 315 HOH HOH . 
D 4 HOH A 73 468 316 HOH HOH . 
D 4 HOH A 74 469 317 HOH HOH . 
D 4 HOH A 75 470 318 HOH HOH . 
D 4 HOH A 76 471 319 HOH HOH . 
D 4 HOH A 77 472 320 HOH HOH . 
D 4 HOH A 78 473 321 HOH HOH . 
D 4 HOH A 79 474 322 HOH HOH . 
D 4 HOH A 80 475 323 HOH HOH . 
D 4 HOH A 81 476 324 HOH HOH . 
D 4 HOH A 82 477 325 HOH HOH . 
D 4 HOH A 83 478 326 HOH HOH . 
D 4 HOH A 84 479 329 HOH HOH . 
D 4 HOH A 85 480 330 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 5HA . . . B 2 62.484 47.51 8.855 1 37.93 ? C1 5HA 400 A 1 
HETATM 2 C C2 5HA . . . B 2 63.969 47.234 8.869 1 36.86 ? C2 5HA 400 A 1 
HETATM 3 C C3 5HA . . . B 2 63.296 47.927 10.07 1 35.69 ? C3 5HA 400 A 1 
HETATM 4 N N1 5HA . . . B 2 64.725 48.159 7.997 1 38.91 ? N1 5HA 400 A 1 
HETATM 5 C C4 5HA . . . B 2 66.149 47.903 8.15 1 33.16 ? C4 5HA 400 A 1 
HETATM 6 C C5 5HA . . . B 2 66.902 49.04 7.485 1 31.57 ? C5 5HA 400 A 1 
HETATM 7 C C6 5HA . . . B 2 68.316 48.929 7.912 1 30.7 ? C6 5HA 400 A 1 
HETATM 8 N N2 5HA . . . B 2 68.951 47.667 7.45 1 31.99 ? N2 5HA 400 A 1 
HETATM 9 C C7 5HA . . . B 2 69.049 46.613 8.286 1 34.17 ? C7 5HA 400 A 1 
HETATM 10 O O2 5HA . . . B 2 68.416 46.513 9.343 1 34.78 ? O2 5HA 400 A 1 
HETATM 11 O O3 5HA . . . B 2 66.404 50.321 7.876 1 31.02 ? O3 5HA 400 A 1 
HETATM 12 C C8 5HA . . . B 2 69.106 50.084 7.398 1 27.89 ? C8 5HA 400 A 1 
HETATM 13 C C9 5HA . . . B 2 69.734 45.386 7.661 1 36.04 ? C9 5HA 400 A 1 
HETATM 14 C C10 5HA . . . B 2 70.814 45.512 6.786 1 34.03 ? C10 5HA 400 A 1 
HETATM 15 C C11 5HA . . . B 2 71.381 44.395 6.189 1 35.13 ? C11 5HA 400 A 1 
HETATM 16 C C12 5HA . . . B 2 70.867 43.105 6.402 1 37.76 ? C12 5HA 400 A 1 
HETATM 17 C C13 5HA . . . B 2 69.793 42.985 7.324 1 40.56 ? C13 5HA 400 A 1 
HETATM 18 C C14 5HA . . . B 2 69.221 44.129 7.931 1 37.01 ? C14 5HA 400 A 1 
HETATM 19 C C15 5HA . . . B 2 72.49 44.66 5.23 1 35.54 ? C15 5HA 400 A 1 
HETATM 20 N N3 5HA . . . B 2 69.129 41.832 7.598 1 42.82 ? N3 5HA 400 A 1 
HETATM 21 O O4 5HA . . . B 2 73.223 43.838 4.748 1 37.05 ? O4 5HA 400 A 1 
HETATM 22 C C16 5HA . . . B 2 68.893 41.482 9.027 1 44.69 ? C16 5HA 400 A 1 
HETATM 23 S S1 5HA . . . B 2 69.404 40.494 6.68 1 48.09 ? S1 5HA 400 A 1 
HETATM 24 C C23 5HA . . . B 2 70.884 39.615 7.222 1 45.53 ? C23 5HA 400 A 1 
HETATM 25 O O5 5HA . . . B 2 68.18 39.66 7.008 1 45.96 ? O5 5HA 400 A 1 
HETATM 26 O O6 5HA . . . B 2 69.608 40.722 5.188 1 46.5 ? O6 5HA 400 A 1 
HETATM 27 C C24 5HA . . . B 2 71.164 49.831 8.903 1 27.68 ? C24 5HA 400 A 1 
HETATM 28 C C25 5HA . . . B 2 72.54 49.669 9.07 1 29.8 ? C25 5HA 400 A 1 
HETATM 29 C C26 5HA . . . B 2 73.409 49.537 8.002 1 26.86 ? C26 5HA 400 A 1 
HETATM 30 C C27 5HA . . . B 2 72.855 49.597 6.746 1 28.35 ? C27 5HA 400 A 1 
HETATM 31 C C28 5HA . . . B 2 71.489 49.753 6.561 1 25.28 ? C28 5HA 400 A 1 
HETATM 32 C C29 5HA . . . B 2 70.63 49.874 7.623 1 27.09 ? C29 5HA 400 A 1 
HETATM 33 N N4 5HA . . . B 2 72.459 45.82 4.656 1 38.61 ? N4 5HA 400 A 1 
HETATM 34 C C17 5HA . . . B 2 73.501 46.049 3.7 1 34.46 ? C17 5HA 400 A 1 
HETATM 35 C C18 5HA . . . B 2 74.118 47.372 4.146 1 34.19 ? C18 5HA 400 A 1 
HETATM 36 C C30 5HA . . . B 2 72.905 46.087 2.298 1 33.64 ? C30 5HA 400 A 1 
HETATM 37 C C31 5HA . . . B 2 71.706 46.736 2.044 1 33 ? C31 5HA 400 A 1 
HETATM 38 C C32 5HA . . . B 2 71.219 46.749 0.705 1 31.23 ? C32 5HA 400 A 1 
HETATM 39 C C33 5HA . . . B 2 71.893 46.132 -0.333 1 31.61 ? C33 5HA 400 A 1 
HETATM 40 C C34 5HA . . . B 2 73.093 45.49 -0.054 1 35.8 ? C34 5HA 400 A 1 
HETATM 41 C C35 5HA . . . B 2 73.603 45.476 1.253 1 32.72 ? C35 5HA 400 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           41 
#