data_3TPV # _model_server_result.job_id sZ_dMz6QoHotdjouRvvlMw _model_server_result.datetime_utc '2024-10-10 11:17:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tpv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3TPV # _exptl.entry_id 3TPV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TPV _cell.length_a 133.7 _cell.length_b 133.7 _cell.length_c 48.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TPV _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 149 B ILE 149 1_555 A N SEP 150 B SEP 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C SEP 150 B SEP 150 1_555 A N VAL 151 B VAL 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TPV _atom_sites.fract_transf_matrix[1][1] 0.007479 _atom_sites.fract_transf_matrix[1][2] 0.004318 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE B 1 500 500 ADE ADE . C 3 SO4 B 1 833 833 SO4 SO4 . D 4 HOH B 1 441 2 HOH TIP . D 4 HOH B 2 442 5 HOH TIP . D 4 HOH B 3 443 6 HOH TIP . D 4 HOH B 4 444 8 HOH TIP . D 4 HOH B 5 445 10 HOH TIP . D 4 HOH B 6 446 11 HOH TIP . D 4 HOH B 7 447 12 HOH TIP . D 4 HOH B 8 448 13 HOH TIP . D 4 HOH B 9 449 14 HOH TIP . D 4 HOH B 10 450 15 HOH TIP . D 4 HOH B 11 451 16 HOH TIP . D 4 HOH B 12 452 17 HOH TIP . D 4 HOH B 13 453 18 HOH TIP . D 4 HOH B 14 454 19 HOH TIP . D 4 HOH B 15 455 20 HOH TIP . D 4 HOH B 16 456 21 HOH TIP . D 4 HOH B 17 457 22 HOH TIP . D 4 HOH B 18 458 23 HOH TIP . D 4 HOH B 19 459 24 HOH TIP . D 4 HOH B 20 460 25 HOH TIP . D 4 HOH B 21 461 26 HOH TIP . D 4 HOH B 22 462 27 HOH TIP . D 4 HOH B 23 463 30 HOH TIP . D 4 HOH B 24 464 31 HOH TIP . D 4 HOH B 25 465 32 HOH TIP . D 4 HOH B 26 466 34 HOH TIP . D 4 HOH B 27 467 35 HOH TIP . D 4 HOH B 28 468 36 HOH TIP . D 4 HOH B 29 469 37 HOH TIP . D 4 HOH B 30 470 38 HOH TIP . D 4 HOH B 31 471 39 HOH TIP . D 4 HOH B 32 472 40 HOH TIP . D 4 HOH B 33 473 42 HOH TIP . D 4 HOH B 34 474 43 HOH TIP . D 4 HOH B 35 475 44 HOH TIP . D 4 HOH B 36 476 45 HOH TIP . D 4 HOH B 37 477 46 HOH TIP . D 4 HOH B 38 478 47 HOH TIP . D 4 HOH B 39 479 48 HOH TIP . D 4 HOH B 40 480 49 HOH TIP . D 4 HOH B 41 481 50 HOH TIP . D 4 HOH B 42 482 51 HOH TIP . D 4 HOH B 43 483 52 HOH TIP . D 4 HOH B 44 484 53 HOH TIP . D 4 HOH B 45 485 55 HOH TIP . D 4 HOH B 46 486 56 HOH TIP . D 4 HOH B 47 487 57 HOH TIP . D 4 HOH B 48 488 58 HOH TIP . D 4 HOH B 49 489 59 HOH TIP . D 4 HOH B 50 490 60 HOH TIP . D 4 HOH B 51 491 61 HOH TIP . D 4 HOH B 52 492 62 HOH TIP . D 4 HOH B 53 493 64 HOH TIP . D 4 HOH B 54 494 65 HOH TIP . D 4 HOH B 55 495 66 HOH TIP . D 4 HOH B 56 496 67 HOH TIP . D 4 HOH B 57 497 68 HOH TIP . D 4 HOH B 58 498 69 HOH TIP . D 4 HOH B 59 499 70 HOH TIP . D 4 HOH B 60 501 71 HOH TIP . D 4 HOH B 61 502 72 HOH TIP . D 4 HOH B 62 503 73 HOH TIP . D 4 HOH B 63 504 74 HOH TIP . D 4 HOH B 64 505 75 HOH TIP . D 4 HOH B 65 506 76 HOH TIP . D 4 HOH B 66 507 77 HOH TIP . D 4 HOH B 67 508 78 HOH TIP . D 4 HOH B 68 509 79 HOH TIP . D 4 HOH B 69 510 80 HOH TIP . D 4 HOH B 70 511 81 HOH TIP . D 4 HOH B 71 512 82 HOH TIP . D 4 HOH B 72 513 83 HOH TIP . D 4 HOH B 73 514 84 HOH TIP . D 4 HOH B 74 515 85 HOH TIP . D 4 HOH B 75 516 86 HOH TIP . D 4 HOH B 76 517 87 HOH TIP . D 4 HOH B 77 518 88 HOH TIP . D 4 HOH B 78 519 89 HOH TIP . D 4 HOH B 79 520 90 HOH TIP . D 4 HOH B 80 521 91 HOH TIP . D 4 HOH B 81 522 92 HOH TIP . D 4 HOH B 82 523 93 HOH TIP . D 4 HOH B 83 524 94 HOH TIP . D 4 HOH B 84 525 95 HOH TIP . D 4 HOH B 85 526 96 HOH TIP . D 4 HOH B 86 527 97 HOH TIP . D 4 HOH B 87 528 98 HOH TIP . D 4 HOH B 88 529 99 HOH TIP . D 4 HOH B 89 530 100 HOH TIP . D 4 HOH B 90 531 101 HOH TIP . D 4 HOH B 91 532 102 HOH TIP . D 4 HOH B 92 533 103 HOH TIP . D 4 HOH B 93 534 104 HOH TIP . D 4 HOH B 94 535 105 HOH TIP . D 4 HOH B 95 536 106 HOH TIP . D 4 HOH B 96 537 107 HOH TIP . D 4 HOH B 97 538 108 HOH TIP . D 4 HOH B 98 539 109 HOH TIP . D 4 HOH B 99 540 110 HOH TIP . D 4 HOH B 100 541 111 HOH TIP . D 4 HOH B 101 542 112 HOH TIP . D 4 HOH B 102 543 113 HOH TIP . D 4 HOH B 103 544 114 HOH TIP . D 4 HOH B 104 545 115 HOH TIP . D 4 HOH B 105 546 116 HOH TIP . D 4 HOH B 106 547 117 HOH TIP . D 4 HOH B 107 548 118 HOH TIP . D 4 HOH B 108 549 119 HOH TIP . D 4 HOH B 109 550 120 HOH TIP . D 4 HOH B 110 551 121 HOH TIP . D 4 HOH B 111 552 122 HOH TIP . D 4 HOH B 112 553 123 HOH TIP . D 4 HOH B 113 554 124 HOH TIP . D 4 HOH B 114 555 125 HOH TIP . D 4 HOH B 115 556 126 HOH TIP . D 4 HOH B 116 557 127 HOH TIP . D 4 HOH B 117 558 128 HOH TIP . D 4 HOH B 118 559 129 HOH TIP . D 4 HOH B 119 560 130 HOH TIP . D 4 HOH B 120 561 131 HOH TIP . D 4 HOH B 121 562 132 HOH TIP . D 4 HOH B 122 563 133 HOH TIP . D 4 HOH B 123 564 134 HOH TIP . D 4 HOH B 124 565 135 HOH TIP . D 4 HOH B 125 566 136 HOH TIP . D 4 HOH B 126 567 137 HOH TIP . D 4 HOH B 127 568 138 HOH TIP . D 4 HOH B 128 569 139 HOH TIP . D 4 HOH B 129 570 140 HOH TIP . D 4 HOH B 130 571 141 HOH TIP . D 4 HOH B 131 572 142 HOH TIP . D 4 HOH B 132 573 143 HOH TIP . D 4 HOH B 133 574 144 HOH TIP . D 4 HOH B 134 575 145 HOH TIP . D 4 HOH B 135 576 146 HOH TIP . D 4 HOH B 136 577 147 HOH TIP . D 4 HOH B 137 578 148 HOH TIP . D 4 HOH B 138 579 149 HOH TIP . D 4 HOH B 139 580 150 HOH TIP . D 4 HOH B 140 581 151 HOH TIP . D 4 HOH B 141 582 152 HOH TIP . D 4 HOH B 142 583 153 HOH TIP . D 4 HOH B 143 584 154 HOH TIP . D 4 HOH B 144 585 155 HOH TIP . D 4 HOH B 145 586 156 HOH TIP . D 4 HOH B 146 587 157 HOH TIP . D 4 HOH B 147 588 158 HOH TIP . D 4 HOH B 148 589 159 HOH TIP . D 4 HOH B 149 590 160 HOH TIP . D 4 HOH B 150 591 161 HOH TIP . D 4 HOH B 151 592 162 HOH TIP . D 4 HOH B 152 593 163 HOH TIP . D 4 HOH B 153 594 164 HOH TIP . D 4 HOH B 154 595 165 HOH TIP . D 4 HOH B 155 596 166 HOH TIP . D 4 HOH B 156 597 167 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . B 2 -36.342 35.875 4.531 1 51.22 ? N9 ADE 500 B 1 HETATM 2 C C8 ADE . . . B 2 -36.224 34.499 4.251 1 45.74 ? C8 ADE 500 B 1 HETATM 3 N N7 ADE . . . B 2 -35.317 33.873 4.967 1 36.83 ? N7 ADE 500 B 1 HETATM 4 C C5 ADE . . . B 2 -34.819 34.899 5.782 1 37.77 ? C5 ADE 500 B 1 HETATM 5 C C6 ADE . . . B 2 -33.846 34.935 6.831 1 32.18 ? C6 ADE 500 B 1 HETATM 6 N N6 ADE . . . B 2 -33.176 33.822 7.164 1 36.11 ? N6 ADE 500 B 1 HETATM 7 N N1 ADE . . . B 2 -33.585 36.147 7.482 1 31.34 ? N1 ADE 500 B 1 HETATM 8 C C2 ADE . . . B 2 -34.274 37.286 7.156 1 32.55 ? C2 ADE 500 B 1 HETATM 9 N N3 ADE . . . B 2 -35.234 37.375 6.169 1 41.32 ? N3 ADE 500 B 1 HETATM 10 C C4 ADE . . . B 2 -35.51 36.119 5.572 1 40.81 ? C4 ADE 500 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #