data_3TPW # _model_server_result.job_id zpj77DN_0Cj-qUdbKG4Q3g _model_server_result.datetime_utc '2025-01-10 13:25:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tpw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 3TPW # _exptl.entry_id 3TPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TPW _cell.length_a 60.619 _cell.length_b 60.619 _cell.length_c 63.731 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -y+2,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 60.619 104.995188 0 3 'crystal symmetry operation' 3_575 -x+y,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -60.619 104.995188 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 153 1_555 E O HOH . A HOH 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc2 C MG MG . A MG 153 1_555 E O HOH . A HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc3 C MG MG . A MG 153 1_555 E O HOH . A HOH 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 C MG MG . A MG 153 1_555 B O2G DUP . A DUP 777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc5 C MG MG . A MG 153 1_555 B O1B DUP . A DUP 777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc6 C MG MG . A MG 153 1_555 B O1A DUP . A DUP 777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 379 n n C C2 TRS sing 380 n n C C3 TRS sing 381 n n C N TRS sing 382 n n C1 O1 TRS sing 383 n n C1 H11 TRS sing 384 n n C1 H12 TRS sing 385 n n C2 O2 TRS sing 386 n n C2 H21 TRS sing 387 n n C2 H22 TRS sing 388 n n C3 O3 TRS sing 389 n n C3 H31 TRS sing 390 n n C3 H32 TRS sing 391 n n N HN1 TRS sing 392 n n N HN2 TRS sing 393 n n N HN3 TRS sing 394 n n O1 HO1 TRS sing 395 n n O2 HO2 TRS sing 396 n n O3 HO3 TRS sing 397 n n # _atom_sites.entry_id 3TPW _atom_sites.fract_transf_matrix[1][1] 0.016496 _atom_sites.fract_transf_matrix[1][2] 0.009524 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DUP A 1 777 777 DUP DUP . C 3 MG A 1 153 1 MG MG . D 4 TRS A 1 154 1 TRS TRS . E 5 HOH A 1 155 1 HOH HOH . E 5 HOH A 2 156 2 HOH HOH . E 5 HOH A 3 157 3 HOH HOH . E 5 HOH A 4 158 4 HOH HOH . E 5 HOH A 5 159 5 HOH HOH . E 5 HOH A 6 160 6 HOH HOH . E 5 HOH A 7 161 7 HOH HOH . E 5 HOH A 8 162 8 HOH HOH . E 5 HOH A 9 163 9 HOH HOH . E 5 HOH A 10 164 10 HOH HOH . E 5 HOH A 11 165 11 HOH HOH . E 5 HOH A 12 166 12 HOH HOH . E 5 HOH A 13 167 13 HOH HOH . E 5 HOH A 14 168 14 HOH HOH . E 5 HOH A 15 169 15 HOH HOH . E 5 HOH A 16 170 17 HOH HOH . E 5 HOH A 17 171 18 HOH HOH . E 5 HOH A 18 172 19 HOH HOH . E 5 HOH A 19 173 21 HOH HOH . E 5 HOH A 20 174 22 HOH HOH . E 5 HOH A 21 175 23 HOH HOH . E 5 HOH A 22 176 24 HOH HOH . E 5 HOH A 23 177 25 HOH HOH . E 5 HOH A 24 178 26 HOH HOH . E 5 HOH A 25 179 27 HOH HOH . E 5 HOH A 26 180 28 HOH HOH . E 5 HOH A 27 181 29 HOH HOH . E 5 HOH A 28 182 30 HOH HOH . E 5 HOH A 29 183 31 HOH HOH . E 5 HOH A 30 184 32 HOH HOH . E 5 HOH A 31 185 33 HOH HOH . E 5 HOH A 32 186 34 HOH HOH . E 5 HOH A 33 187 35 HOH HOH . E 5 HOH A 34 188 36 HOH HOH . E 5 HOH A 35 189 37 HOH HOH . E 5 HOH A 36 190 38 HOH HOH . E 5 HOH A 37 191 39 HOH HOH . E 5 HOH A 38 192 40 HOH HOH . E 5 HOH A 39 193 41 HOH HOH . E 5 HOH A 40 194 42 HOH HOH . E 5 HOH A 41 195 43 HOH HOH . E 5 HOH A 42 196 44 HOH HOH . E 5 HOH A 43 197 45 HOH HOH . E 5 HOH A 44 198 46 HOH HOH . E 5 HOH A 45 199 47 HOH HOH . E 5 HOH A 46 200 48 HOH HOH . E 5 HOH A 47 201 49 HOH HOH . E 5 HOH A 48 202 50 HOH HOH . E 5 HOH A 49 203 51 HOH HOH . E 5 HOH A 50 204 52 HOH HOH . E 5 HOH A 51 205 53 HOH HOH . E 5 HOH A 52 206 54 HOH HOH . E 5 HOH A 53 207 55 HOH HOH . E 5 HOH A 54 208 56 HOH HOH . E 5 HOH A 55 209 57 HOH HOH . E 5 HOH A 56 210 58 HOH HOH . E 5 HOH A 57 211 59 HOH HOH . E 5 HOH A 58 212 60 HOH HOH . E 5 HOH A 59 213 61 HOH HOH . E 5 HOH A 60 214 62 HOH HOH . E 5 HOH A 61 215 63 HOH HOH . E 5 HOH A 62 216 64 HOH HOH . E 5 HOH A 63 217 65 HOH HOH . E 5 HOH A 64 218 66 HOH HOH . E 5 HOH A 65 219 67 HOH HOH . E 5 HOH A 66 220 68 HOH HOH . E 5 HOH A 67 221 69 HOH HOH . E 5 HOH A 68 222 70 HOH HOH . E 5 HOH A 69 223 71 HOH HOH . E 5 HOH A 70 224 72 HOH HOH . E 5 HOH A 71 225 73 HOH HOH . E 5 HOH A 72 226 74 HOH HOH . E 5 HOH A 73 227 75 HOH HOH . E 5 HOH A 74 228 76 HOH HOH . E 5 HOH A 75 229 77 HOH HOH . E 5 HOH A 76 230 78 HOH HOH . E 5 HOH A 77 231 79 HOH HOH . E 5 HOH A 78 232 80 HOH HOH . E 5 HOH A 79 233 81 HOH HOH . E 5 HOH A 80 234 82 HOH HOH . E 5 HOH A 81 235 83 HOH HOH . E 5 HOH A 82 236 84 HOH HOH . E 5 HOH A 83 237 85 HOH HOH . E 5 HOH A 84 238 86 HOH HOH . E 5 HOH A 85 239 87 HOH HOH . E 5 HOH A 86 240 88 HOH HOH . E 5 HOH A 87 241 89 HOH HOH . E 5 HOH A 88 242 90 HOH HOH . E 5 HOH A 89 243 91 HOH HOH . E 5 HOH A 90 244 92 HOH HOH . E 5 HOH A 91 245 93 HOH HOH . E 5 HOH A 92 246 95 HOH HOH . E 5 HOH A 93 247 96 HOH HOH . E 5 HOH A 94 248 97 HOH HOH . E 5 HOH A 95 249 98 HOH HOH . E 5 HOH A 96 250 99 HOH HOH . E 5 HOH A 97 251 100 HOH HOH . E 5 HOH A 98 252 101 HOH HOH . E 5 HOH A 99 253 102 HOH HOH . E 5 HOH A 100 254 103 HOH HOH . E 5 HOH A 101 255 104 HOH HOH . E 5 HOH A 102 256 105 HOH HOH . E 5 HOH A 103 257 107 HOH HOH . E 5 HOH A 104 258 108 HOH HOH . E 5 HOH A 105 259 109 HOH HOH . E 5 HOH A 106 260 110 HOH HOH . E 5 HOH A 107 261 111 HOH HOH . E 5 HOH A 108 262 112 HOH HOH . E 5 HOH A 109 263 113 HOH HOH . E 5 HOH A 110 264 114 HOH HOH . E 5 HOH A 111 265 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 4 -0.088 69.904 24.734 0.3 17.36 ? C TRS 154 A 1 HETATM 2 C C1 TRS . . . D 4 -0.512 71.259 24.161 0.3 37.19 ? C1 TRS 154 A 1 HETATM 3 C C2 TRS . . . D 4 1.207 69.434 24.073 0.3 36.28 ? C2 TRS 154 A 1 HETATM 4 C C3 TRS . . . D 4 -1.174 68.843 24.536 0.3 39.7 ? C3 TRS 154 A 1 HETATM 5 N N TRS . . . D 4 0.156 70.046 26.142 0.3 32.88 ? N TRS 154 A 1 HETATM 6 O O1 TRS . . . D 4 0.343 72.353 24.468 0.3 15.58 ? O1 TRS 154 A 1 HETATM 7 O O2 TRS . . . D 4 1.869 68.391 24.77 0.3 32.16 ? O2 TRS 154 A 1 HETATM 8 O O3 TRS . . . D 4 -2.398 69.281 23.968 0.3 19.19 ? O3 TRS 154 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #