data_3TQ9 # _model_server_result.job_id pfZeELCjue3c8onPSbQsCA _model_server_result.datetime_utc '2024-11-08 07:02:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 3TQ9 # _exptl.entry_id 3TQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.66 _cell.angle_gamma 90 _cell.entry_id 3TQ9 _cell.length_a 49.25 _cell.length_b 37.193 _cell.length_c 53.003 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 292 n n PA O2A NDP sing 293 n n PA O5B NDP sing 294 n n PA O3 NDP sing 295 n n O2A HOA2 NDP sing 296 n n O5B C5B NDP sing 297 n n C5B C4B NDP sing 298 n n C5B H51A NDP sing 299 n n C5B H52A NDP sing 300 n n C4B O4B NDP sing 301 n n C4B C3B NDP sing 302 n n C4B H4B NDP sing 303 n n O4B C1B NDP sing 304 n n C3B O3B NDP sing 305 n n C3B C2B NDP sing 306 n n C3B H3B NDP sing 307 n n O3B HO3A NDP sing 308 n n C2B O2B NDP sing 309 n n C2B C1B NDP sing 310 n n C2B H2B NDP sing 311 n n O2B P2B NDP sing 312 n n C1B N9A NDP sing 313 n n C1B H1B NDP sing 314 n n N9A C8A NDP sing 315 n y N9A C4A NDP sing 316 n y C8A N7A NDP doub 317 n y C8A H8A NDP sing 318 n n N7A C5A NDP sing 319 n y C5A C6A NDP sing 320 n y C5A C4A NDP doub 321 n y C6A N6A NDP sing 322 n n C6A N1A NDP doub 323 n y N6A H61A NDP sing 324 n n N6A H62A NDP sing 325 n n N1A C2A NDP sing 326 n y C2A N3A NDP doub 327 n y C2A H2A NDP sing 328 n n N3A C4A NDP sing 329 n y O3 PN NDP sing 330 n n PN O1N NDP doub 331 n n PN O2N NDP sing 332 n n PN O5D NDP sing 333 n n O2N H21N NDP sing 334 n n O5D C5D NDP sing 335 n n C5D C4D NDP sing 336 n n C5D H51N NDP sing 337 n n C5D H52N NDP sing 338 n n C4D O4D NDP sing 339 n n C4D C3D NDP sing 340 n n C4D H4D NDP sing 341 n n O4D C1D NDP sing 342 n n C3D O3D NDP sing 343 n n C3D C2D NDP sing 344 n n C3D H3D NDP sing 345 n n O3D HO3N NDP sing 346 n n C2D O2D NDP sing 347 n n C2D C1D NDP sing 348 n n C2D H2D NDP sing 349 n n O2D HO2N NDP sing 350 n n C1D N1N NDP sing 351 n n C1D H1D NDP sing 352 n n N1N C2N NDP sing 353 n n N1N C6N NDP sing 354 n n C2N C3N NDP doub 355 n n C2N H2N NDP sing 356 n n C3N C7N NDP sing 357 n n C3N C4N NDP sing 358 n n C7N O7N NDP doub 359 n n C7N N7N NDP sing 360 n n N7N H71N NDP sing 361 n n N7N H72N NDP sing 362 n n C4N C5N NDP sing 363 n n C4N H41N NDP sing 364 n n C4N H42N NDP sing 365 n n C5N C6N NDP doub 366 n n C5N H5N NDP sing 367 n n C6N H6N NDP sing 368 n n P2B O1X NDP doub 369 n n P2B O2X NDP sing 370 n n P2B O3X NDP sing 371 n n O2X HOP2 NDP sing 372 n n O3X HOP3 NDP sing 373 n n # _atom_sites.entry_id 3TQ9 _atom_sites.fract_transf_matrix[1][1] 0.020305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006464 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 1001 1001 NDP NDP . C 3 MTX A 1 2001 2001 MTX MTX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 19.286 9.234 7.889 1 51.95 ? PA NDP 1001 A 1 HETATM 2 O O1A NDP . . . B 2 18.817 8.36 6.765 1 53.53 ? O1A NDP 1001 A 1 HETATM 3 O O2A NDP . . . B 2 19.212 8.712 9.292 1 53.4 ? O2A NDP 1001 A 1 HETATM 4 O O5B NDP . . . B 2 20.802 9.595 7.587 1 51.86 ? O5B NDP 1001 A 1 HETATM 5 C C5B NDP . . . B 2 21.106 10.325 6.402 1 52.82 ? C5B NDP 1001 A 1 HETATM 6 C C4B NDP . . . B 2 22.61 10.331 6.192 1 52.36 ? C4B NDP 1001 A 1 HETATM 7 O O4B NDP . . . B 2 23.065 8.985 6.035 1 52.87 ? O4B NDP 1001 A 1 HETATM 8 C C3B NDP . . . B 2 23.087 11.041 4.933 1 52.28 ? C3B NDP 1001 A 1 HETATM 9 O O3B NDP . . . B 2 23.23 12.448 5.089 1 53.2 ? O3B NDP 1001 A 1 HETATM 10 C C2B NDP . . . B 2 24.424 10.392 4.724 1 52.23 ? C2B NDP 1001 A 1 HETATM 11 O O2B NDP . . . B 2 25.344 10.879 5.696 1 52.73 ? O2B NDP 1001 A 1 HETATM 12 C C1B NDP . . . B 2 24.132 8.945 5.083 1 51.93 ? C1B NDP 1001 A 1 HETATM 13 N N9A NDP . . . B 2 23.703 8.102 3.956 1 51.06 ? N9A NDP 1001 A 1 HETATM 14 C C8A NDP . . . B 2 22.444 7.748 3.659 1 51.96 ? C8A NDP 1001 A 1 HETATM 15 N N7A NDP . . . B 2 22.422 6.951 2.561 1 53.3 ? N7A NDP 1001 A 1 HETATM 16 C C5A NDP . . . B 2 23.696 6.788 2.161 1 52.14 ? C5A NDP 1001 A 1 HETATM 17 C C6A NDP . . . B 2 24.391 6.076 1.081 1 54.41 ? C6A NDP 1001 A 1 HETATM 18 N N6A NDP . . . B 2 23.7 5.345 0.176 1 56.56 ? N6A NDP 1001 A 1 HETATM 19 N N1A NDP . . . B 2 25.736 6.169 1.025 1 54.42 ? N1A NDP 1001 A 1 HETATM 20 C C2A NDP . . . B 2 26.434 6.89 1.916 1 52.04 ? C2A NDP 1001 A 1 HETATM 21 N N3A NDP . . . B 2 25.854 7.553 2.913 1 50.33 ? N3A NDP 1001 A 1 HETATM 22 C C4A NDP . . . B 2 24.525 7.545 3.081 1 50.96 ? C4A NDP 1001 A 1 HETATM 23 O O3 NDP . . . B 2 18.618 10.7 7.845 1 53.43 ? O3 NDP 1001 A 1 HETATM 24 P PN NDP . . . B 2 17.049 11.09 7.936 1 53.23 ? PN NDP 1001 A 1 HETATM 25 O O1N NDP . . . B 2 16.284 10.618 6.724 1 54.33 ? O1N NDP 1001 A 1 HETATM 26 O O2N NDP . . . B 2 17.041 12.555 8.258 1 55.5 ? O2N NDP 1001 A 1 HETATM 27 O O5D NDP . . . B 2 16.5 10.308 9.208 1 54.81 ? O5D NDP 1001 A 1 HETATM 28 C C5D NDP . . . B 2 16.689 10.85 10.509 1 54.75 ? C5D NDP 1001 A 1 HETATM 29 C C4D NDP . . . B 2 15.318 11.183 11.049 1 55.07 ? C4D NDP 1001 A 1 HETATM 30 O O4D NDP . . . B 2 14.552 9.981 11.149 1 54.12 ? O4D NDP 1001 A 1 HETATM 31 C C3D NDP . . . B 2 15.427 11.749 12.448 1 55.93 ? C3D NDP 1001 A 1 HETATM 32 O O3D NDP . . . B 2 14.304 12.597 12.712 1 57.1 ? O3D NDP 1001 A 1 HETATM 33 C C2D NDP . . . B 2 15.36 10.512 13.307 1 55.62 ? C2D NDP 1001 A 1 HETATM 34 O O2D NDP . . . B 2 15.019 10.851 14.657 1 57.57 ? O2D NDP 1001 A 1 HETATM 35 C C1D NDP . . . B 2 14.304 9.714 12.538 1 54.3 ? C1D NDP 1001 A 1 HETATM 36 N N1N NDP . . . B 2 14.328 8.265 12.726 1 52.93 ? N1N NDP 1001 A 1 HETATM 37 C C2N NDP . . . B 2 13.181 7.684 13.082 1 52.43 ? C2N NDP 1001 A 1 HETATM 38 C C3N NDP . . . B 2 13.088 6.327 13.271 1 51.73 ? C3N NDP 1001 A 1 HETATM 39 C C7N NDP . . . B 2 11.791 5.711 13.667 1 51.35 ? C7N NDP 1001 A 1 HETATM 40 O O7N NDP . . . B 2 11.731 4.512 13.822 1 51.23 ? O7N NDP 1001 A 1 HETATM 41 N N7N NDP . . . B 2 10.731 6.486 13.86 1 52.08 ? N7N NDP 1001 A 1 HETATM 42 C C4N NDP . . . B 2 14.318 5.498 13.055 1 52.61 ? C4N NDP 1001 A 1 HETATM 43 C C5N NDP . . . B 2 15.53 6.201 12.673 1 52.6 ? C5N NDP 1001 A 1 HETATM 44 C C6N NDP . . . B 2 15.466 7.579 12.515 1 53.14 ? C6N NDP 1001 A 1 HETATM 45 P P2B NDP . . . B 2 26.414 12.053 5.5 1 52.02 ? P2B NDP 1001 A 1 HETATM 46 O O1X NDP . . . B 2 25.489 13.234 5.507 1 54.28 ? O1X NDP 1001 A 1 HETATM 47 O O2X NDP . . . B 2 27.301 12.005 6.72 1 53.89 ? O2X NDP 1001 A 1 HETATM 48 O O3X NDP . . . B 2 27.157 11.74 4.232 1 53.25 ? O3X NDP 1001 A 1 # _model_server_stats.io_time_ms 130 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #