data_3TQ9 # _model_server_result.job_id -p4kfEtnrW4H68vhY8FLWg _model_server_result.datetime_utc '2024-11-08 06:53:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2001}' # _entry.id 3TQ9 # _exptl.entry_id 3TQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.66 _cell.angle_gamma 90 _cell.entry_id 3TQ9 _cell.length_a 49.25 _cell.length_b 37.193 _cell.length_c 53.003 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 235 n y N1 C8A MTX sing 236 n y C2 NA2 MTX sing 237 n n C2 N3 MTX sing 238 n y NA2 HN21 MTX sing 239 n n NA2 HN22 MTX sing 240 n n N3 C4 MTX doub 241 n y C4 NA4 MTX sing 242 n n C4 C4A MTX sing 243 n y NA4 HN41 MTX sing 244 n n NA4 HN42 MTX sing 245 n n C4A N5 MTX sing 246 n y C4A C8A MTX doub 247 n y N5 C6 MTX doub 248 n y C6 C7 MTX sing 249 n y C6 C9 MTX sing 250 n n C7 N8 MTX doub 251 n y C7 H7 MTX sing 252 n n N8 C8A MTX sing 253 n y C9 N10 MTX sing 254 n n C9 H91 MTX sing 255 n n C9 H92 MTX sing 256 n n N10 CM MTX sing 257 n n N10 C14 MTX sing 258 n n CM HM1 MTX sing 259 n n CM HM2 MTX sing 260 n n CM HM3 MTX sing 261 n n C11 C12 MTX doub 262 n y C11 C16 MTX sing 263 n y C11 C MTX sing 264 n n C12 C13 MTX sing 265 n y C12 H12 MTX sing 266 n n C13 C14 MTX doub 267 n y C13 H13 MTX sing 268 n n C14 C15 MTX sing 269 n y C15 C16 MTX doub 270 n y C15 H15 MTX sing 271 n n C16 H16 MTX sing 272 n n C O MTX doub 273 n n C N MTX sing 274 n n N CA MTX sing 275 n n N HN MTX sing 276 n n CA CT MTX sing 277 n n CA CB MTX sing 278 n n CA HA MTX sing 279 n n CT O1 MTX doub 280 n n CT O2 MTX sing 281 n n O2 HO2 MTX sing 282 n n CB CG MTX sing 283 n n CB HB1 MTX sing 284 n n CB HB2 MTX sing 285 n n CG CD MTX sing 286 n n CG HG1 MTX sing 287 n n CG HG2 MTX sing 288 n n CD OE1 MTX doub 289 n n CD OE2 MTX sing 290 n n OE2 HOE2 MTX sing 291 n n # _atom_sites.entry_id 3TQ9 _atom_sites.fract_transf_matrix[1][1] 0.020305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006464 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 1001 1001 NDP NDP . C 3 MTX A 1 2001 2001 MTX MTX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . C 3 11.493 2.583 17.378 1 56.68 ? N1 MTX 2001 A 1 HETATM 2 C C2 MTX . . . C 3 11.354 1.468 16.57 1 56.23 ? C2 MTX 2001 A 1 HETATM 3 N NA2 MTX . . . C 3 10.334 0.645 16.748 1 55.56 ? NA2 MTX 2001 A 1 HETATM 4 N N3 MTX . . . C 3 12.268 1.203 15.569 1 56.7 ? N3 MTX 2001 A 1 HETATM 5 C C4 MTX . . . C 3 13.342 2.039 15.357 1 56.61 ? C4 MTX 2001 A 1 HETATM 6 N NA4 MTX . . . C 3 14.216 1.771 14.389 1 56.62 ? NA4 MTX 2001 A 1 HETATM 7 C C4A MTX . . . C 3 13.496 3.162 16.162 1 57.1 ? C4A MTX 2001 A 1 HETATM 8 N N5 MTX . . . C 3 14.57 4.006 15.958 1 56.81 ? N5 MTX 2001 A 1 HETATM 9 C C6 MTX . . . C 3 14.732 5.111 16.752 1 56.84 ? C6 MTX 2001 A 1 HETATM 10 C C7 MTX . . . C 3 13.811 5.395 17.768 1 57.03 ? C7 MTX 2001 A 1 HETATM 11 N N8 MTX . . . C 3 12.731 4.55 17.984 1 57.17 ? N8 MTX 2001 A 1 HETATM 12 C C8A MTX . . . C 3 12.567 3.434 17.18 1 57.45 ? C8A MTX 2001 A 1 HETATM 13 C C9 MTX . . . C 3 15.925 5.987 16.483 1 57.78 ? C9 MTX 2001 A 1 HETATM 14 N N10 MTX . . . C 3 16.29 6.748 17.666 1 58.95 ? N10 MTX 2001 A 1 HETATM 15 C CM MTX . . . C 3 16.178 8.217 17.565 1 59.12 ? CM MTX 2001 A 1 HETATM 16 C C11 MTX . . . C 3 17.064 4.933 21.406 1 62.62 ? C11 MTX 2001 A 1 HETATM 17 C C12 MTX . . . C 3 16.826 6.294 21.322 1 61.8 ? C12 MTX 2001 A 1 HETATM 18 C C13 MTX . . . C 3 16.567 6.886 20.091 1 61.37 ? C13 MTX 2001 A 1 HETATM 19 C C14 MTX . . . C 3 16.554 6.116 18.926 1 59.92 ? C14 MTX 2001 A 1 HETATM 20 C C15 MTX . . . C 3 16.802 4.746 19.024 1 60.42 ? C15 MTX 2001 A 1 HETATM 21 C C16 MTX . . . C 3 17.056 4.158 20.259 1 61.43 ? C16 MTX 2001 A 1 HETATM 22 C C MTX . . . C 3 17.338 4.324 22.749 1 63.1 ? C MTX 2001 A 1 HETATM 23 O O MTX . . . C 3 17.778 5.165 23.794 1 63.4 ? O MTX 2001 A 1 HETATM 24 N N MTX . . . C 3 17.174 3.017 22.935 1 63.8 ? N MTX 2001 A 1 HETATM 25 C CA MTX . . . C 3 17.966 2.312 23.925 1 64.5 ? CA MTX 2001 A 1 HETATM 26 C CT MTX . . . C 3 18.209 0.903 23.52 1 64.35 ? CT MTX 2001 A 1 HETATM 27 O O1 MTX . . . C 3 17.597 0.423 22.549 1 64.33 ? O1 MTX 2001 A 1 HETATM 28 O O2 MTX . . . C 3 19.04 0.21 24.151 1 64.97 ? O2 MTX 2001 A 1 HETATM 29 C CB MTX . . . C 3 17.32 2.33 25.308 1 65.01 ? CB MTX 2001 A 1 HETATM 30 C CG MTX . . . C 3 15.803 2.42 25.271 1 66.8 ? CG MTX 2001 A 1 HETATM 31 C CD MTX . . . C 3 15.311 2.44 26.697 1 70.29 ? CD MTX 2001 A 1 HETATM 32 O OE1 MTX . . . C 3 14.886 1.379 27.223 1 72.46 ? OE1 MTX 2001 A 1 HETATM 33 O OE2 MTX . . . C 3 15.332 3.512 27.361 1 72.34 ? OE2 MTX 2001 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #