data_3TQD # _model_server_result.job_id xXeMCZE90ojlbPnuRddktg _model_server_result.datetime_utc '2024-11-08 05:59:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3TQD # _exptl.entry_id 3TQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.92 _cell.angle_gamma 90 _cell.entry_id 3TQD _cell.length_a 67.752 _cell.length_b 51.616 _cell.length_c 78.874 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 35 A PRO 28 1_555 A N MSE 36 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C MSE 36 A MSE 29 1_555 A N ILE 37 A ILE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C CYS 73 A CYS 66 1_555 A N MSE 74 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C MSE 74 A MSE 67 1_555 A N THR 75 A THR 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale5 A C LYS 214 A LYS 207 1_555 A N MSE 215 A MSE 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 215 A MSE 208 1_555 A N GLU 216 A GLU 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale7 A C HIS 231 A HIS 224 1_555 A N MSE 232 A MSE 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 232 A MSE 225 1_555 A N VAL 233 A VAL 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A O ASN 180 A ASN 173 1_555 B NI NI . A NI 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A OE1 GLN 182 A GLN 175 1_555 B NI NI . A NI 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc3 D O HOH . A HOH 294 1_555 B NI NI . A NI 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc4 D O HOH . A HOH 297 1_555 B NI NI . A NI 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TQD _atom_sites.fract_transf_matrix[1][1] 0.01476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005939 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 300 300 NI NI . C 3 ACT A 1 400 400 ACT ACT . D 4 HOH A 1 250 1 HOH HOH . D 4 HOH A 2 251 2 HOH HOH . D 4 HOH A 3 252 3 HOH HOH . D 4 HOH A 4 253 4 HOH HOH . D 4 HOH A 5 254 5 HOH HOH . D 4 HOH A 6 255 6 HOH HOH . D 4 HOH A 7 256 7 HOH HOH . D 4 HOH A 8 257 8 HOH HOH . D 4 HOH A 9 258 9 HOH HOH . D 4 HOH A 10 259 10 HOH HOH . D 4 HOH A 11 260 11 HOH HOH . D 4 HOH A 12 261 12 HOH HOH . D 4 HOH A 13 262 13 HOH HOH . D 4 HOH A 14 263 14 HOH HOH . D 4 HOH A 15 264 15 HOH HOH . D 4 HOH A 16 265 16 HOH HOH . D 4 HOH A 17 266 17 HOH HOH . D 4 HOH A 18 267 18 HOH HOH . D 4 HOH A 19 268 19 HOH HOH . D 4 HOH A 20 269 20 HOH HOH . D 4 HOH A 21 270 21 HOH HOH . D 4 HOH A 22 271 22 HOH HOH . D 4 HOH A 23 272 23 HOH HOH . D 4 HOH A 24 273 24 HOH HOH . D 4 HOH A 25 274 25 HOH HOH . D 4 HOH A 26 275 26 HOH HOH . D 4 HOH A 27 276 27 HOH HOH . D 4 HOH A 28 277 28 HOH HOH . D 4 HOH A 29 278 29 HOH HOH . D 4 HOH A 30 279 30 HOH HOH . D 4 HOH A 31 280 31 HOH HOH . D 4 HOH A 32 281 32 HOH HOH . D 4 HOH A 33 282 33 HOH HOH . D 4 HOH A 34 283 34 HOH HOH . D 4 HOH A 35 284 35 HOH HOH . D 4 HOH A 36 285 36 HOH HOH . D 4 HOH A 37 286 37 HOH HOH . D 4 HOH A 38 287 38 HOH HOH . D 4 HOH A 39 288 39 HOH HOH . D 4 HOH A 40 289 40 HOH HOH . D 4 HOH A 41 290 41 HOH HOH . D 4 HOH A 42 291 42 HOH HOH . D 4 HOH A 43 292 43 HOH HOH . D 4 HOH A 44 293 44 HOH HOH . D 4 HOH A 45 294 45 HOH HOH . D 4 HOH A 46 295 46 HOH HOH . D 4 HOH A 47 296 47 HOH HOH . D 4 HOH A 48 297 48 HOH HOH . D 4 HOH A 49 298 49 HOH HOH . D 4 HOH A 50 299 50 HOH HOH . D 4 HOH A 51 301 51 HOH HOH . D 4 HOH A 52 302 52 HOH HOH . D 4 HOH A 53 303 53 HOH HOH . D 4 HOH A 54 304 54 HOH HOH . D 4 HOH A 55 305 55 HOH HOH . D 4 HOH A 56 306 56 HOH HOH . D 4 HOH A 57 307 57 HOH HOH . D 4 HOH A 58 308 58 HOH HOH . D 4 HOH A 59 309 59 HOH HOH . D 4 HOH A 60 310 60 HOH HOH . D 4 HOH A 61 311 61 HOH HOH . D 4 HOH A 62 312 62 HOH HOH . D 4 HOH A 63 313 63 HOH HOH . D 4 HOH A 64 314 64 HOH HOH . D 4 HOH A 65 315 65 HOH HOH . D 4 HOH A 66 316 66 HOH HOH . D 4 HOH A 67 317 67 HOH HOH . D 4 HOH A 68 318 68 HOH HOH . D 4 HOH A 69 319 69 HOH HOH . D 4 HOH A 70 320 70 HOH HOH . D 4 HOH A 71 321 71 HOH HOH . D 4 HOH A 72 322 72 HOH HOH . D 4 HOH A 73 323 73 HOH HOH . D 4 HOH A 74 324 74 HOH HOH . D 4 HOH A 75 325 75 HOH HOH . D 4 HOH A 76 326 76 HOH HOH . D 4 HOH A 77 327 77 HOH HOH . D 4 HOH A 78 328 78 HOH HOH . D 4 HOH A 79 329 79 HOH HOH . D 4 HOH A 80 330 80 HOH HOH . D 4 HOH A 81 331 81 HOH HOH . D 4 HOH A 82 332 82 HOH HOH . D 4 HOH A 83 333 83 HOH HOH . D 4 HOH A 84 334 84 HOH HOH . D 4 HOH A 85 335 85 HOH HOH . D 4 HOH A 86 336 86 HOH HOH . D 4 HOH A 87 337 87 HOH HOH . D 4 HOH A 88 338 88 HOH HOH . D 4 HOH A 89 339 89 HOH HOH . D 4 HOH A 90 340 90 HOH HOH . D 4 HOH A 91 341 91 HOH HOH . D 4 HOH A 92 342 92 HOH HOH . D 4 HOH A 93 343 93 HOH HOH . D 4 HOH A 94 344 94 HOH HOH . D 4 HOH A 95 345 95 HOH HOH . D 4 HOH A 96 346 96 HOH HOH . D 4 HOH A 97 347 97 HOH HOH . D 4 HOH A 98 348 98 HOH HOH . D 4 HOH A 99 349 99 HOH HOH . D 4 HOH A 100 350 100 HOH HOH . D 4 HOH A 101 351 101 HOH HOH . D 4 HOH A 102 352 102 HOH HOH . D 4 HOH A 103 353 103 HOH HOH . D 4 HOH A 104 354 104 HOH HOH . D 4 HOH A 105 355 105 HOH HOH . D 4 HOH A 106 356 106 HOH HOH . D 4 HOH A 107 357 107 HOH HOH . D 4 HOH A 108 358 108 HOH HOH . D 4 HOH A 109 359 109 HOH HOH . D 4 HOH A 110 360 110 HOH HOH . D 4 HOH A 111 361 111 HOH HOH . D 4 HOH A 112 362 112 HOH HOH . D 4 HOH A 113 363 113 HOH HOH . D 4 HOH A 114 364 114 HOH HOH . D 4 HOH A 115 365 115 HOH HOH . D 4 HOH A 116 366 116 HOH HOH . D 4 HOH A 117 367 117 HOH HOH . D 4 HOH A 118 368 118 HOH HOH . D 4 HOH A 119 369 119 HOH HOH . D 4 HOH A 120 370 120 HOH HOH . D 4 HOH A 121 371 121 HOH HOH . D 4 HOH A 122 372 122 HOH HOH . D 4 HOH A 123 373 123 HOH HOH . D 4 HOH A 124 374 124 HOH HOH . D 4 HOH A 125 375 125 HOH HOH . D 4 HOH A 126 376 126 HOH HOH . D 4 HOH A 127 377 127 HOH HOH . D 4 HOH A 128 378 128 HOH HOH . D 4 HOH A 129 379 129 HOH HOH . D 4 HOH A 130 380 130 HOH HOH . D 4 HOH A 131 381 131 HOH HOH . D 4 HOH A 132 382 132 HOH HOH . D 4 HOH A 133 383 133 HOH HOH . D 4 HOH A 134 384 134 HOH HOH . D 4 HOH A 135 385 135 HOH HOH . D 4 HOH A 136 386 136 HOH HOH . D 4 HOH A 137 387 137 HOH HOH . D 4 HOH A 138 388 138 HOH HOH . D 4 HOH A 139 389 139 HOH HOH . D 4 HOH A 140 390 140 HOH HOH . D 4 HOH A 141 391 141 HOH HOH . D 4 HOH A 142 392 142 HOH HOH . D 4 HOH A 143 393 143 HOH HOH . D 4 HOH A 144 394 144 HOH HOH . D 4 HOH A 145 395 145 HOH HOH . D 4 HOH A 146 396 146 HOH HOH . D 4 HOH A 147 397 147 HOH HOH . D 4 HOH A 148 398 148 HOH HOH . D 4 HOH A 149 399 149 HOH HOH . D 4 HOH A 150 401 150 HOH HOH . D 4 HOH A 151 402 151 HOH HOH . D 4 HOH A 152 403 152 HOH HOH . D 4 HOH A 153 404 153 HOH HOH . D 4 HOH A 154 405 154 HOH HOH . D 4 HOH A 155 406 155 HOH HOH . D 4 HOH A 156 407 156 HOH HOH . D 4 HOH A 157 408 157 HOH HOH . D 4 HOH A 158 409 158 HOH HOH . D 4 HOH A 159 410 159 HOH HOH . D 4 HOH A 160 411 160 HOH HOH . D 4 HOH A 161 412 161 HOH HOH . D 4 HOH A 162 413 162 HOH HOH . D 4 HOH A 163 414 163 HOH HOH . D 4 HOH A 164 415 164 HOH HOH . D 4 HOH A 165 416 165 HOH HOH . D 4 HOH A 166 417 166 HOH HOH . D 4 HOH A 167 418 167 HOH HOH . D 4 HOH A 168 419 168 HOH HOH . D 4 HOH A 169 420 169 HOH HOH . D 4 HOH A 170 421 170 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -17.549 _atom_site.Cartn_y 56.708 _atom_site.Cartn_z -7.193 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 95.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #