data_3TR0 # _model_server_result.job_id XDSG64o3gfRbdNM_G0XCyw _model_server_result.datetime_utc '2024-11-26 09:36:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tr0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":205}' # _entry.id 3TR0 # _exptl.entry_id 3TR0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.35 _cell.angle_gamma 90 _cell.entry_id 3TR0 _cell.length_a 67.834 _cell.length_b 45.899 _cell.length_c 70.042 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TR0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0.42786 0 -70.040693 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 65 A ALA 62 1_555 A N MSE 66 A MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 66 A MSE 63 1_555 A N VAL 67 A VAL 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C GLU 157 A GLU 154 1_555 A N MSE 158 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 158 A MSE 155 1_555 A N ALA 159 A ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 3TR0 _atom_sites.fract_transf_matrix[1][1] 0.014742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 203 203 SO4 SO4 . C 2 SO4 A 1 204 204 SO4 SO4 . D 3 5GP A 1 205 205 5GP 5GP . E 4 HOH A 1 206 206 HOH HOH . E 4 HOH A 2 207 207 HOH HOH . E 4 HOH A 3 208 208 HOH HOH . E 4 HOH A 4 209 209 HOH HOH . E 4 HOH A 5 210 210 HOH HOH . E 4 HOH A 6 211 211 HOH HOH . E 4 HOH A 7 212 212 HOH HOH . E 4 HOH A 8 213 213 HOH HOH . E 4 HOH A 9 214 214 HOH HOH . E 4 HOH A 10 215 215 HOH HOH . E 4 HOH A 11 216 216 HOH HOH . E 4 HOH A 12 217 217 HOH HOH . E 4 HOH A 13 218 218 HOH HOH . E 4 HOH A 14 219 219 HOH HOH . E 4 HOH A 15 220 220 HOH HOH . E 4 HOH A 16 221 221 HOH HOH . E 4 HOH A 17 222 222 HOH HOH . E 4 HOH A 18 223 223 HOH HOH . E 4 HOH A 19 224 224 HOH HOH . E 4 HOH A 20 225 225 HOH HOH . E 4 HOH A 21 226 226 HOH HOH . E 4 HOH A 22 227 227 HOH HOH . E 4 HOH A 23 228 228 HOH HOH . E 4 HOH A 24 229 229 HOH HOH . E 4 HOH A 25 230 230 HOH HOH . E 4 HOH A 26 231 231 HOH HOH . E 4 HOH A 27 232 232 HOH HOH . E 4 HOH A 28 233 233 HOH HOH . E 4 HOH A 29 234 234 HOH HOH . E 4 HOH A 30 235 235 HOH HOH . E 4 HOH A 31 236 236 HOH HOH . E 4 HOH A 32 237 237 HOH HOH . E 4 HOH A 33 238 238 HOH HOH . E 4 HOH A 34 239 239 HOH HOH . E 4 HOH A 35 240 240 HOH HOH . E 4 HOH A 36 241 241 HOH HOH . E 4 HOH A 37 242 242 HOH HOH . E 4 HOH A 38 243 243 HOH HOH . E 4 HOH A 39 244 244 HOH HOH . E 4 HOH A 40 245 245 HOH HOH . E 4 HOH A 41 246 246 HOH HOH . E 4 HOH A 42 247 247 HOH HOH . E 4 HOH A 43 248 248 HOH HOH . E 4 HOH A 44 249 249 HOH HOH . E 4 HOH A 45 250 250 HOH HOH . E 4 HOH A 46 251 251 HOH HOH . E 4 HOH A 47 252 252 HOH HOH . E 4 HOH A 48 253 253 HOH HOH . E 4 HOH A 49 254 254 HOH HOH . E 4 HOH A 50 255 255 HOH HOH . E 4 HOH A 51 256 256 HOH HOH . E 4 HOH A 52 257 257 HOH HOH . E 4 HOH A 53 258 258 HOH HOH . E 4 HOH A 54 259 259 HOH HOH . E 4 HOH A 55 260 260 HOH HOH . E 4 HOH A 56 261 261 HOH HOH . E 4 HOH A 57 262 262 HOH HOH . E 4 HOH A 58 263 263 HOH HOH . E 4 HOH A 59 264 264 HOH HOH . E 4 HOH A 60 265 265 HOH HOH . E 4 HOH A 61 266 266 HOH HOH . E 4 HOH A 62 267 267 HOH HOH . E 4 HOH A 63 268 268 HOH HOH . E 4 HOH A 64 269 269 HOH HOH . E 4 HOH A 65 270 270 HOH HOH . E 4 HOH A 66 271 271 HOH HOH . E 4 HOH A 67 272 272 HOH HOH . E 4 HOH A 68 273 273 HOH HOH . E 4 HOH A 69 274 274 HOH HOH . E 4 HOH A 70 275 275 HOH HOH . E 4 HOH A 71 276 276 HOH HOH . E 4 HOH A 72 277 277 HOH HOH . E 4 HOH A 73 278 278 HOH HOH . E 4 HOH A 74 279 279 HOH HOH . E 4 HOH A 75 280 280 HOH HOH . E 4 HOH A 76 281 281 HOH HOH . E 4 HOH A 77 282 282 HOH HOH . E 4 HOH A 78 283 283 HOH HOH . E 4 HOH A 79 284 284 HOH HOH . E 4 HOH A 80 285 285 HOH HOH . E 4 HOH A 81 286 286 HOH HOH . E 4 HOH A 82 287 287 HOH HOH . E 4 HOH A 83 288 288 HOH HOH . E 4 HOH A 84 289 289 HOH HOH . E 4 HOH A 85 290 290 HOH HOH . E 4 HOH A 86 291 291 HOH HOH . E 4 HOH A 87 292 292 HOH HOH . E 4 HOH A 88 293 293 HOH HOH . E 4 HOH A 89 294 294 HOH HOH . E 4 HOH A 90 295 295 HOH HOH . E 4 HOH A 91 296 296 HOH HOH . E 4 HOH A 92 297 297 HOH HOH . E 4 HOH A 93 298 298 HOH HOH . E 4 HOH A 94 299 299 HOH HOH . E 4 HOH A 95 300 300 HOH HOH . E 4 HOH A 96 301 301 HOH HOH . E 4 HOH A 97 302 302 HOH HOH . E 4 HOH A 98 303 303 HOH HOH . E 4 HOH A 99 304 304 HOH HOH . E 4 HOH A 100 305 305 HOH HOH . E 4 HOH A 101 306 306 HOH HOH . E 4 HOH A 102 307 307 HOH HOH . E 4 HOH A 103 308 308 HOH HOH . E 4 HOH A 104 309 309 HOH HOH . E 4 HOH A 105 310 310 HOH HOH . E 4 HOH A 106 311 311 HOH HOH . E 4 HOH A 107 312 312 HOH HOH . E 4 HOH A 108 313 313 HOH HOH . E 4 HOH A 109 314 314 HOH HOH . E 4 HOH A 110 315 315 HOH HOH . E 4 HOH A 111 316 316 HOH HOH . E 4 HOH A 112 317 317 HOH HOH . E 4 HOH A 113 318 318 HOH HOH . E 4 HOH A 114 319 319 HOH HOH . E 4 HOH A 115 320 320 HOH HOH . E 4 HOH A 116 321 321 HOH HOH . E 4 HOH A 117 322 322 HOH HOH . E 4 HOH A 118 323 323 HOH HOH . E 4 HOH A 119 324 324 HOH HOH . E 4 HOH A 120 325 325 HOH HOH . E 4 HOH A 121 326 326 HOH HOH . E 4 HOH A 122 327 327 HOH HOH . E 4 HOH A 123 328 328 HOH HOH . E 4 HOH A 124 329 329 HOH HOH . E 4 HOH A 125 330 330 HOH HOH . E 4 HOH A 126 331 331 HOH HOH . E 4 HOH A 127 332 332 HOH HOH . E 4 HOH A 128 333 333 HOH HOH . E 4 HOH A 129 334 334 HOH HOH . E 4 HOH A 130 335 335 HOH HOH . E 4 HOH A 131 336 336 HOH HOH . E 4 HOH A 132 337 337 HOH HOH . E 4 HOH A 133 338 338 HOH HOH . E 4 HOH A 134 339 339 HOH HOH . E 4 HOH A 135 340 340 HOH HOH . E 4 HOH A 136 341 341 HOH HOH . E 4 HOH A 137 342 342 HOH HOH . E 4 HOH A 138 343 343 HOH HOH . E 4 HOH A 139 344 344 HOH HOH . E 4 HOH A 140 345 345 HOH HOH . E 4 HOH A 141 346 346 HOH HOH . E 4 HOH A 142 347 347 HOH HOH . E 4 HOH A 143 348 348 HOH HOH . E 4 HOH A 144 349 349 HOH HOH . E 4 HOH A 145 350 350 HOH HOH . E 4 HOH A 146 351 351 HOH HOH . E 4 HOH A 147 352 352 HOH HOH . E 4 HOH A 148 353 353 HOH HOH . E 4 HOH A 149 354 354 HOH HOH . E 4 HOH A 150 355 355 HOH HOH . E 4 HOH A 151 356 356 HOH HOH . E 4 HOH A 152 357 357 HOH HOH . E 4 HOH A 153 358 358 HOH HOH . E 4 HOH A 154 359 359 HOH HOH . E 4 HOH A 155 360 360 HOH HOH . E 4 HOH A 156 361 361 HOH HOH . E 4 HOH A 157 362 362 HOH HOH . E 4 HOH A 158 363 363 HOH HOH . E 4 HOH A 159 364 364 HOH HOH . E 4 HOH A 160 365 365 HOH HOH . E 4 HOH A 161 366 366 HOH HOH . E 4 HOH A 162 367 367 HOH HOH . E 4 HOH A 163 368 368 HOH HOH . E 4 HOH A 164 369 369 HOH HOH . E 4 HOH A 165 370 370 HOH HOH . E 4 HOH A 166 371 371 HOH HOH . E 4 HOH A 167 372 372 HOH HOH . E 4 HOH A 168 373 373 HOH HOH . E 4 HOH A 169 374 374 HOH HOH . E 4 HOH A 170 375 375 HOH HOH . E 4 HOH A 171 376 376 HOH HOH . E 4 HOH A 172 377 377 HOH HOH . E 4 HOH A 173 378 378 HOH HOH . E 4 HOH A 174 379 379 HOH HOH . E 4 HOH A 175 380 380 HOH HOH . E 4 HOH A 176 381 381 HOH HOH . E 4 HOH A 177 382 382 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . D 3 -16.032 19.196 -11.982 1 30.33 ? P 5GP 205 A 1 HETATM 2 O O1P 5GP . . . D 3 -14.987 18.156 -11.661 1 27.75 ? O1P 5GP 205 A 1 HETATM 3 O O2P 5GP . . . D 3 -16.699 19.911 -10.837 1 26.59 ? O2P 5GP 205 A 1 HETATM 4 O O3P 5GP . . . D 3 -17.072 18.567 -12.88 1 31.35 ? O3P 5GP 205 A 1 HETATM 5 O O5' 5GP . . . D 3 -15.419 20.262 -12.991 1 26.25 ? O5' 5GP 205 A 1 HETATM 6 C C5' 5GP . . . D 3 -16.092 21.479 -13.265 1 26.97 ? C5' 5GP 205 A 1 HETATM 7 C C4' 5GP . . . D 3 -15.384 22.263 -14.337 1 29.6 ? C4' 5GP 205 A 1 HETATM 8 O O4' 5GP . . . D 3 -14.481 23.207 -13.727 1 21.49 ? O4' 5GP 205 A 1 HETATM 9 C C3' 5GP . . . D 3 -14.487 21.454 -15.259 1 30.14 ? C3' 5GP 205 A 1 HETATM 10 O O3' 5GP . . . D 3 -15.203 20.8 -16.292 1 34.52 ? O3' 5GP 205 A 1 HETATM 11 C C2' 5GP . . . D 3 -13.492 22.489 -15.772 1 35.69 ? C2' 5GP 205 A 1 HETATM 12 O O2' 5GP . . . D 3 -14.028 23.179 -16.891 1 33.21 ? O2' 5GP 205 A 1 HETATM 13 C C1' 5GP . . . D 3 -13.411 23.473 -14.599 1 25.6 ? C1' 5GP 205 A 1 HETATM 14 N N9 5GP . . . D 3 -12.149 23.355 -13.848 1 17.36 ? N9 5GP 205 A 1 HETATM 15 C C8 5GP . . . D 3 -11.646 22.306 -13.184 1 16.77 ? C8 5GP 205 A 1 HETATM 16 N N7 5GP . . . D 3 -10.465 22.676 -12.627 1 15.47 ? N7 5GP 205 A 1 HETATM 17 C C5 5GP . . . D 3 -10.244 23.971 -12.956 1 16.57 ? C5 5GP 205 A 1 HETATM 18 C C6 5GP . . . D 3 -9.234 24.891 -12.696 1 19.68 ? C6 5GP 205 A 1 HETATM 19 O O6 5GP . . . D 3 -8.231 24.575 -12.011 1 25.37 ? O6 5GP 205 A 1 HETATM 20 N N1 5GP . . . D 3 -9.341 26.131 -13.189 1 21.52 ? N1 5GP 205 A 1 HETATM 21 C C2 5GP . . . D 3 -10.395 26.504 -13.929 1 21.04 ? C2 5GP 205 A 1 HETATM 22 N N2 5GP . . . D 3 -10.49 27.761 -14.423 1 16.75 ? N2 5GP 205 A 1 HETATM 23 N N3 5GP . . . D 3 -11.385 25.635 -14.199 1 17.34 ? N3 5GP 205 A 1 HETATM 24 C C4 5GP . . . D 3 -11.32 24.378 -13.715 1 17.59 ? C4 5GP 205 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 34 _model_server_stats.element_count 24 #