data_3TR3 # _model_server_result.job_id '_nBTc1juRuCJInzpv15xMg' _model_server_result.datetime_utc '2024-11-27 21:50:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tr3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":80}' # _entry.id 3TR3 # _exptl.entry_id 3TR3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TR3 _cell.length_a 66.245 _cell.length_b 66.245 _cell.length_c 118.009 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TR3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+y+1,-x,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 66.245 0 -39.336333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N VAL 5 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C HIS 61 A HIS 58 1_555 A N MSE 62 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C MSE 62 A MSE 59 1_555 A N GLN 63 A GLN 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 B C MSE 4 B MSE 1 1_555 B N VAL 5 B VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 B C HIS 61 B HIS 58 1_555 B N MSE 62 B MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 B C MSE 62 B MSE 59 1_555 B N GLN 63 B GLN 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? metalc ? metalc1 A NE2 HIS 32 A HIS 29 1_555 C CO CO . A CO 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 A NE2 HIS 67 A HIS 64 1_555 C CO CO . A CO 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc3 C CO CO . A CO 80 1_555 E O HOH . A HOH 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc4 C CO CO . A CO 80 1_555 E O HOH . A HOH 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc5 C CO CO . A CO 80 1_555 E O HOH . A HOH 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc6 B NE2 HIS 32 B HIS 29 1_555 D CO CO . B CO 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 B NE2 HIS 67 B HIS 64 1_555 D CO CO . B CO 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 D CO CO . B CO 80 1_555 F O HOH . B HOH 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TR3 _atom_sites.fract_transf_matrix[1][1] 0.015095 _atom_sites.fract_transf_matrix[1][2] 0.008715 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 80 1 CO CO . D 2 CO B 1 80 2 CO CO . E 3 HOH A 1 81 2 HOH HOH . E 3 HOH A 2 82 3 HOH HOH . E 3 HOH A 3 83 4 HOH HOH . E 3 HOH A 4 84 5 HOH HOH . E 3 HOH A 5 85 8 HOH HOH . E 3 HOH A 6 86 9 HOH HOH . E 3 HOH A 7 87 16 HOH HOH . E 3 HOH A 8 88 19 HOH HOH . E 3 HOH A 9 89 20 HOH HOH . E 3 HOH A 10 90 21 HOH HOH . E 3 HOH A 11 91 22 HOH HOH . E 3 HOH A 12 92 24 HOH HOH . E 3 HOH A 13 93 26 HOH HOH . E 3 HOH A 14 94 30 HOH HOH . E 3 HOH A 15 95 31 HOH HOH . E 3 HOH A 16 96 32 HOH HOH . E 3 HOH A 17 97 34 HOH HOH . E 3 HOH A 18 98 35 HOH HOH . E 3 HOH A 19 99 41 HOH HOH . E 3 HOH A 20 100 49 HOH HOH . E 3 HOH A 21 101 50 HOH HOH . E 3 HOH A 22 102 51 HOH HOH . E 3 HOH A 23 103 57 HOH HOH . E 3 HOH A 24 104 62 HOH HOH . E 3 HOH A 25 105 63 HOH HOH . E 3 HOH A 26 106 64 HOH HOH . E 3 HOH A 27 107 66 HOH HOH . E 3 HOH A 28 108 67 HOH HOH . E 3 HOH A 29 109 68 HOH HOH . E 3 HOH A 30 110 71 HOH HOH . F 3 HOH B 1 81 1 HOH HOH . F 3 HOH B 2 82 6 HOH HOH . F 3 HOH B 3 83 7 HOH HOH . F 3 HOH B 4 84 10 HOH HOH . F 3 HOH B 5 85 11 HOH HOH . F 3 HOH B 6 86 12 HOH HOH . F 3 HOH B 7 87 13 HOH HOH . F 3 HOH B 8 88 14 HOH HOH . F 3 HOH B 9 89 15 HOH HOH . F 3 HOH B 10 90 17 HOH HOH . F 3 HOH B 11 91 18 HOH HOH . F 3 HOH B 12 92 23 HOH HOH . F 3 HOH B 13 93 25 HOH HOH . F 3 HOH B 14 94 27 HOH HOH . F 3 HOH B 15 95 28 HOH HOH . F 3 HOH B 16 96 29 HOH HOH . F 3 HOH B 17 97 33 HOH HOH . F 3 HOH B 18 98 36 HOH HOH . F 3 HOH B 19 99 37 HOH HOH . F 3 HOH B 20 100 38 HOH HOH . F 3 HOH B 21 101 39 HOH HOH . F 3 HOH B 22 102 40 HOH HOH . F 3 HOH B 23 103 42 HOH HOH . F 3 HOH B 24 104 43 HOH HOH . F 3 HOH B 25 105 44 HOH HOH . F 3 HOH B 26 106 45 HOH HOH . F 3 HOH B 27 107 46 HOH HOH . F 3 HOH B 28 108 47 HOH HOH . F 3 HOH B 29 109 48 HOH HOH . F 3 HOH B 30 110 52 HOH HOH . F 3 HOH B 31 111 53 HOH HOH . F 3 HOH B 32 112 54 HOH HOH . F 3 HOH B 33 113 55 HOH HOH . F 3 HOH B 34 114 56 HOH HOH . F 3 HOH B 35 115 58 HOH HOH . F 3 HOH B 36 116 59 HOH HOH . F 3 HOH B 37 117 60 HOH HOH . F 3 HOH B 38 118 61 HOH HOH . F 3 HOH B 39 119 65 HOH HOH . F 3 HOH B 40 120 69 HOH HOH . F 3 HOH B 41 121 70 HOH HOH . F 3 HOH B 42 122 72 HOH HOH . F 3 HOH B 43 123 73 HOH HOH . F 3 HOH B 44 124 74 HOH HOH . F 3 HOH B 45 125 75 HOH HOH . F 3 HOH B 46 126 76 HOH HOH . F 3 HOH B 47 127 77 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 43.544 _atom_site.Cartn_y -26.784 _atom_site.Cartn_z -8.616 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 80 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #