data_3TR8 # _model_server_result.job_id TEy4OydzEkkV9Q-61E0VBQ _model_server_result.datetime_utc '2024-11-08 06:46:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":184}' # _entry.id 3TR8 # _exptl.entry_id 3TR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.41 _cell.angle_gamma 90 _cell.entry_id 3TR8 _cell.length_a 117.656 _cell.length_b 61.3 _cell.length_c 58.094 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 110 1_555 B SG CYS 113 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N ASP 5 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C GLU 17 A GLU 14 1_555 A N MSE 18 A MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 18 A MSE 15 1_555 A N THR 19 A THR 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C ALA 60 A ALA 57 1_555 A N MSE 61 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 61 A MSE 58 1_555 A N ASP 62 A ASP 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C TYR 122 A TYR 119 1_555 A N MSE 123 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 123 A MSE 120 1_555 A N PRO 124 A PRO 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale9 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 4 B MSE 1 1_555 B N ASP 5 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 B C GLU 17 B GLU 14 1_555 B N MSE 18 B MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 B C MSE 18 B MSE 15 1_555 B N THR 19 B THR 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C ALA 60 B ALA 57 1_555 B N MSE 61 B MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 61 B MSE 58 1_555 B N ASP 62 B ASP 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C TYR 122 B TYR 119 1_555 B N MSE 123 B MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 B C MSE 123 B MSE 120 1_555 B N PRO 124 B PRO 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? metalc ? metalc1 A OD2 ASP 15 A ASP 12 1_555 C MN MN . A MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc2 A OD1 ASP 15 A ASP 12 1_555 D MN MN . A MN 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc3 A OE2 GLU 17 A GLU 14 1_555 C MN MN . A MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 A OD2 ASP 166 A ASP 163 1_555 C MN MN . A MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 C MN MN . A MN 184 1_555 D MN MN . A MN 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc6 D MN MN . A MN 185 1_555 J O HOH . A HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc7 E MG MG . A MG 186 1_555 J O HOH . A HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc8 B OD2 ASP 15 B ASP 12 1_555 F MN MN . B MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc9 B OD1 ASP 15 B ASP 12 1_555 G MN MN . B MN 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc10 B OE2 GLU 17 B GLU 14 1_555 F MN MN . B MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc11 B OD2 ASP 166 B ASP 163 1_555 F MN MN . B MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc12 F MN MN . B MN 184 1_555 G MN MN . B MN 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc13 G MN MN . B MN 185 1_555 K O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc14 G MN MN . B MN 185 1_555 K O HOH . B HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc15 I MG MG . B MG 187 1_555 K O HOH . B HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TR8 _atom_sites.fract_transf_matrix[1][1] 0.008499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003506 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 184 1 MN MN . D 2 MN A 1 185 2 MN MN . E 3 MG A 1 186 1 MG MG . F 2 MN B 1 184 3 MN MN . G 2 MN B 1 185 4 MN MN . H 4 ACT B 1 186 1 ACT ACT . I 3 MG B 1 187 2 MG MG . J 5 HOH A 1 187 1 HOH HOH . J 5 HOH A 2 188 2 HOH HOH . J 5 HOH A 3 189 4 HOH HOH . J 5 HOH A 4 190 6 HOH HOH . J 5 HOH A 5 191 7 HOH HOH . J 5 HOH A 6 192 10 HOH HOH . J 5 HOH A 7 193 11 HOH HOH . J 5 HOH A 8 194 17 HOH HOH . J 5 HOH A 9 195 18 HOH HOH . J 5 HOH A 10 196 23 HOH HOH . J 5 HOH A 11 197 24 HOH HOH . J 5 HOH A 12 198 25 HOH HOH . J 5 HOH A 13 199 26 HOH HOH . J 5 HOH A 14 200 29 HOH HOH . J 5 HOH A 15 201 30 HOH HOH . J 5 HOH A 16 202 31 HOH HOH . J 5 HOH A 17 203 32 HOH HOH . J 5 HOH A 18 204 33 HOH HOH . J 5 HOH A 19 205 35 HOH HOH . J 5 HOH A 20 206 43 HOH HOH . J 5 HOH A 21 207 44 HOH HOH . J 5 HOH A 22 208 45 HOH HOH . J 5 HOH A 23 209 48 HOH HOH . J 5 HOH A 24 210 49 HOH HOH . J 5 HOH A 25 211 50 HOH HOH . J 5 HOH A 26 212 53 HOH HOH . J 5 HOH A 27 213 56 HOH HOH . J 5 HOH A 28 214 58 HOH HOH . J 5 HOH A 29 215 66 HOH HOH . J 5 HOH A 30 216 68 HOH HOH . J 5 HOH A 31 217 70 HOH HOH . J 5 HOH A 32 218 71 HOH HOH . J 5 HOH A 33 219 72 HOH HOH . J 5 HOH A 34 220 74 HOH HOH . J 5 HOH A 35 221 75 HOH HOH . J 5 HOH A 36 222 77 HOH HOH . J 5 HOH A 37 223 81 HOH HOH . J 5 HOH A 38 224 82 HOH HOH . J 5 HOH A 39 225 83 HOH HOH . J 5 HOH A 40 226 85 HOH HOH . J 5 HOH A 41 227 88 HOH HOH . J 5 HOH A 42 228 89 HOH HOH . J 5 HOH A 43 229 91 HOH HOH . J 5 HOH A 44 230 93 HOH HOH . J 5 HOH A 45 231 94 HOH HOH . J 5 HOH A 46 232 95 HOH HOH . J 5 HOH A 47 233 98 HOH HOH . J 5 HOH A 48 234 99 HOH HOH . J 5 HOH A 49 235 100 HOH HOH . J 5 HOH A 50 236 101 HOH HOH . J 5 HOH A 51 237 102 HOH HOH . J 5 HOH A 52 238 103 HOH HOH . J 5 HOH A 53 239 104 HOH HOH . J 5 HOH A 54 240 106 HOH HOH . J 5 HOH A 55 241 109 HOH HOH . J 5 HOH A 56 242 111 HOH HOH . J 5 HOH A 57 243 112 HOH HOH . J 5 HOH A 58 244 116 HOH HOH . J 5 HOH A 59 245 117 HOH HOH . J 5 HOH A 60 246 118 HOH HOH . J 5 HOH A 61 247 119 HOH HOH . J 5 HOH A 62 248 120 HOH HOH . J 5 HOH A 63 249 123 HOH HOH . J 5 HOH A 64 250 124 HOH HOH . J 5 HOH A 65 251 126 HOH HOH . K 5 HOH B 1 188 3 HOH HOH . K 5 HOH B 2 189 5 HOH HOH . K 5 HOH B 3 190 8 HOH HOH . K 5 HOH B 4 191 9 HOH HOH . K 5 HOH B 5 192 12 HOH HOH . K 5 HOH B 6 193 13 HOH HOH . K 5 HOH B 7 194 14 HOH HOH . K 5 HOH B 8 195 15 HOH HOH . K 5 HOH B 9 196 16 HOH HOH . K 5 HOH B 10 197 19 HOH HOH . K 5 HOH B 11 198 20 HOH HOH . K 5 HOH B 12 199 21 HOH HOH . K 5 HOH B 13 200 22 HOH HOH . K 5 HOH B 14 201 27 HOH HOH . K 5 HOH B 15 202 28 HOH HOH . K 5 HOH B 16 203 34 HOH HOH . K 5 HOH B 17 204 36 HOH HOH . K 5 HOH B 18 205 37 HOH HOH . K 5 HOH B 19 206 38 HOH HOH . K 5 HOH B 20 207 39 HOH HOH . K 5 HOH B 21 208 40 HOH HOH . K 5 HOH B 22 209 41 HOH HOH . K 5 HOH B 23 210 42 HOH HOH . K 5 HOH B 24 211 46 HOH HOH . K 5 HOH B 25 212 47 HOH HOH . K 5 HOH B 26 213 51 HOH HOH . K 5 HOH B 27 214 52 HOH HOH . K 5 HOH B 28 215 54 HOH HOH . K 5 HOH B 29 216 55 HOH HOH . K 5 HOH B 30 217 57 HOH HOH . K 5 HOH B 31 218 59 HOH HOH . K 5 HOH B 32 219 60 HOH HOH . K 5 HOH B 33 220 61 HOH HOH . K 5 HOH B 34 221 62 HOH HOH . K 5 HOH B 35 222 63 HOH HOH . K 5 HOH B 36 223 64 HOH HOH . K 5 HOH B 37 224 65 HOH HOH . K 5 HOH B 38 225 67 HOH HOH . K 5 HOH B 39 226 69 HOH HOH . K 5 HOH B 40 227 73 HOH HOH . K 5 HOH B 41 228 76 HOH HOH . K 5 HOH B 42 229 78 HOH HOH . K 5 HOH B 43 230 79 HOH HOH . K 5 HOH B 44 231 80 HOH HOH . K 5 HOH B 45 232 84 HOH HOH . K 5 HOH B 46 233 86 HOH HOH . K 5 HOH B 47 234 87 HOH HOH . K 5 HOH B 48 235 90 HOH HOH . K 5 HOH B 49 236 92 HOH HOH . K 5 HOH B 50 237 96 HOH HOH . K 5 HOH B 51 238 97 HOH HOH . K 5 HOH B 52 239 105 HOH HOH . K 5 HOH B 53 240 107 HOH HOH . K 5 HOH B 54 241 108 HOH HOH . K 5 HOH B 55 242 110 HOH HOH . K 5 HOH B 56 243 113 HOH HOH . K 5 HOH B 57 244 114 HOH HOH . K 5 HOH B 58 245 115 HOH HOH . K 5 HOH B 59 246 121 HOH HOH . K 5 HOH B 60 247 122 HOH HOH . K 5 HOH B 61 248 125 HOH HOH . K 5 HOH B 62 249 127 HOH HOH . K 5 HOH B 63 250 128 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.677 _atom_site.Cartn_y -4.618 _atom_site.Cartn_z 29.254 _atom_site.occupancy 0.65 _atom_site.B_iso_or_equiv 32.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 184 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #