data_3TRC # _model_server_result.job_id 4LErclqhFYes4watLQnhzQ _model_server_result.datetime_utc '2025-03-05 21:04:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3trc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":170}' # _entry.id 3TRC # _exptl.entry_id 3TRC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TRC _cell.length_a 54.869 _cell.length_b 54.869 _cell.length_c 105.256 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TRC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 105.256 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 A CYS 32 1_555 A SG CYS 43 A CYS 40 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 4 A MSE 1 1_555 A N ASN 5 A ASN 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 4 A MSE 1 1_555 A N ASN 5 A ASN 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ASN 5 A ASN 2 1_555 A N MSE 6 A MSE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 6 A MSE 3 1_555 A N LEU 7 A LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C LEU 57 A LEU 54 1_555 A N MSE 58 A MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 58 A MSE 55 1_555 A N ALA 59 A ALA 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OH TYR 55 A TYR 52 1_555 C NA NA . A NA 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc2 A O GLY 81 A GLY 78 1_555 C NA NA . A NA 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc3 A OE2 GLU 85 A GLU 82 1_555 C NA NA . A NA 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TRC _atom_sites.fract_transf_matrix[1][1] 0.018225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 169 1 PO4 PO4 . C 3 NA A 1 170 1 NA NA . D 4 HOH A 1 171 171 HOH HOH . D 4 HOH A 2 172 172 HOH HOH . D 4 HOH A 3 173 173 HOH HOH . D 4 HOH A 4 174 174 HOH HOH . D 4 HOH A 5 175 175 HOH HOH . D 4 HOH A 6 176 176 HOH HOH . D 4 HOH A 7 177 177 HOH HOH . D 4 HOH A 8 178 178 HOH HOH . D 4 HOH A 9 179 179 HOH HOH . D 4 HOH A 10 180 180 HOH HOH . D 4 HOH A 11 181 181 HOH HOH . D 4 HOH A 12 182 182 HOH HOH . D 4 HOH A 13 183 183 HOH HOH . D 4 HOH A 14 184 184 HOH HOH . D 4 HOH A 15 185 185 HOH HOH . D 4 HOH A 16 186 186 HOH HOH . D 4 HOH A 17 187 187 HOH HOH . D 4 HOH A 18 188 188 HOH HOH . D 4 HOH A 19 189 189 HOH HOH . D 4 HOH A 20 190 190 HOH HOH . D 4 HOH A 21 191 191 HOH HOH . D 4 HOH A 22 192 192 HOH HOH . D 4 HOH A 23 193 193 HOH HOH . D 4 HOH A 24 194 1 HOH HOH . D 4 HOH A 25 195 2 HOH HOH . D 4 HOH A 26 196 3 HOH HOH . D 4 HOH A 27 197 4 HOH HOH . D 4 HOH A 28 198 5 HOH HOH . D 4 HOH A 29 199 6 HOH HOH . D 4 HOH A 30 200 7 HOH HOH . D 4 HOH A 31 201 8 HOH HOH . D 4 HOH A 32 202 9 HOH HOH . D 4 HOH A 33 203 10 HOH HOH . D 4 HOH A 34 204 11 HOH HOH . D 4 HOH A 35 205 12 HOH HOH . D 4 HOH A 36 206 13 HOH HOH . D 4 HOH A 37 207 14 HOH HOH . D 4 HOH A 38 208 15 HOH HOH . D 4 HOH A 39 209 16 HOH HOH . D 4 HOH A 40 210 17 HOH HOH . D 4 HOH A 41 211 18 HOH HOH . D 4 HOH A 42 212 19 HOH HOH . D 4 HOH A 43 213 20 HOH HOH . D 4 HOH A 44 214 21 HOH HOH . D 4 HOH A 45 215 22 HOH HOH . D 4 HOH A 46 216 23 HOH HOH . D 4 HOH A 47 217 24 HOH HOH . D 4 HOH A 48 218 25 HOH HOH . D 4 HOH A 49 219 26 HOH HOH . D 4 HOH A 50 220 27 HOH HOH . D 4 HOH A 51 221 28 HOH HOH . D 4 HOH A 52 222 29 HOH HOH . D 4 HOH A 53 223 30 HOH HOH . D 4 HOH A 54 224 31 HOH HOH . D 4 HOH A 55 225 32 HOH HOH . D 4 HOH A 56 226 33 HOH HOH . D 4 HOH A 57 227 34 HOH HOH . D 4 HOH A 58 228 35 HOH HOH . D 4 HOH A 59 229 36 HOH HOH . D 4 HOH A 60 230 37 HOH HOH . D 4 HOH A 61 231 38 HOH HOH . D 4 HOH A 62 232 39 HOH HOH . D 4 HOH A 63 233 40 HOH HOH . D 4 HOH A 64 234 41 HOH HOH . D 4 HOH A 65 235 42 HOH HOH . D 4 HOH A 66 236 43 HOH HOH . D 4 HOH A 67 237 44 HOH HOH . D 4 HOH A 68 238 45 HOH HOH . D 4 HOH A 69 239 46 HOH HOH . D 4 HOH A 70 240 47 HOH HOH . D 4 HOH A 71 241 48 HOH HOH . D 4 HOH A 72 242 49 HOH HOH . D 4 HOH A 73 243 50 HOH HOH . D 4 HOH A 74 244 51 HOH HOH . D 4 HOH A 75 245 52 HOH HOH . D 4 HOH A 76 246 53 HOH HOH . D 4 HOH A 77 247 54 HOH HOH . D 4 HOH A 78 248 55 HOH HOH . D 4 HOH A 79 249 56 HOH HOH . D 4 HOH A 80 250 57 HOH HOH . D 4 HOH A 81 251 58 HOH HOH . D 4 HOH A 82 252 59 HOH HOH . D 4 HOH A 83 253 60 HOH HOH . D 4 HOH A 84 254 61 HOH HOH . D 4 HOH A 85 255 62 HOH HOH . D 4 HOH A 86 256 63 HOH HOH . D 4 HOH A 87 257 64 HOH HOH . D 4 HOH A 88 258 65 HOH HOH . D 4 HOH A 89 259 66 HOH HOH . D 4 HOH A 90 260 67 HOH HOH . D 4 HOH A 91 261 68 HOH HOH . D 4 HOH A 92 262 69 HOH HOH . D 4 HOH A 93 263 70 HOH HOH . D 4 HOH A 94 264 71 HOH HOH . D 4 HOH A 95 265 72 HOH HOH . D 4 HOH A 96 266 73 HOH HOH . D 4 HOH A 97 267 74 HOH HOH . D 4 HOH A 98 268 75 HOH HOH . D 4 HOH A 99 269 76 HOH HOH . D 4 HOH A 100 270 77 HOH HOH . D 4 HOH A 101 271 78 HOH HOH . D 4 HOH A 102 272 79 HOH HOH . D 4 HOH A 103 273 80 HOH HOH . D 4 HOH A 104 274 81 HOH HOH . D 4 HOH A 105 275 82 HOH HOH . D 4 HOH A 106 276 83 HOH HOH . D 4 HOH A 107 277 84 HOH HOH . D 4 HOH A 108 278 85 HOH HOH . D 4 HOH A 109 279 86 HOH HOH . D 4 HOH A 110 280 87 HOH HOH . D 4 HOH A 111 281 88 HOH HOH . D 4 HOH A 112 282 89 HOH HOH . D 4 HOH A 113 283 90 HOH HOH . D 4 HOH A 114 284 91 HOH HOH . D 4 HOH A 115 285 92 HOH HOH . D 4 HOH A 116 286 93 HOH HOH . D 4 HOH A 117 287 94 HOH HOH . D 4 HOH A 118 288 95 HOH HOH . D 4 HOH A 119 289 96 HOH HOH . D 4 HOH A 120 290 97 HOH HOH . D 4 HOH A 121 291 98 HOH HOH . D 4 HOH A 122 292 99 HOH HOH . D 4 HOH A 123 293 100 HOH HOH . D 4 HOH A 124 294 101 HOH HOH . D 4 HOH A 125 295 102 HOH HOH . D 4 HOH A 126 296 103 HOH HOH . D 4 HOH A 127 297 104 HOH HOH . D 4 HOH A 128 298 105 HOH HOH . D 4 HOH A 129 299 106 HOH HOH . D 4 HOH A 130 300 107 HOH HOH . D 4 HOH A 131 301 108 HOH HOH . D 4 HOH A 132 302 109 HOH HOH . D 4 HOH A 133 303 110 HOH HOH . D 4 HOH A 134 304 111 HOH HOH . D 4 HOH A 135 305 112 HOH HOH . D 4 HOH A 136 306 113 HOH HOH . D 4 HOH A 137 307 114 HOH HOH . D 4 HOH A 138 308 115 HOH HOH . D 4 HOH A 139 309 116 HOH HOH . D 4 HOH A 140 310 117 HOH HOH . D 4 HOH A 141 311 118 HOH HOH . D 4 HOH A 142 312 119 HOH HOH . D 4 HOH A 143 313 120 HOH HOH . D 4 HOH A 144 314 121 HOH HOH . D 4 HOH A 145 315 122 HOH HOH . D 4 HOH A 146 316 123 HOH HOH . D 4 HOH A 147 317 124 HOH HOH . D 4 HOH A 148 318 125 HOH HOH . D 4 HOH A 149 319 126 HOH HOH . D 4 HOH A 150 320 127 HOH HOH . D 4 HOH A 151 321 128 HOH HOH . D 4 HOH A 152 322 129 HOH HOH . D 4 HOH A 153 323 130 HOH HOH . D 4 HOH A 154 324 131 HOH HOH . D 4 HOH A 155 325 132 HOH HOH . D 4 HOH A 156 326 133 HOH HOH . D 4 HOH A 157 327 134 HOH HOH . D 4 HOH A 158 328 135 HOH HOH . D 4 HOH A 159 329 136 HOH HOH . D 4 HOH A 160 330 137 HOH HOH . D 4 HOH A 161 331 138 HOH HOH . D 4 HOH A 162 332 139 HOH HOH . D 4 HOH A 163 333 140 HOH HOH . D 4 HOH A 164 334 141 HOH HOH . D 4 HOH A 165 335 142 HOH HOH . D 4 HOH A 166 336 143 HOH HOH . D 4 HOH A 167 337 144 HOH HOH . D 4 HOH A 168 338 145 HOH HOH . D 4 HOH A 169 339 146 HOH HOH . D 4 HOH A 170 340 147 HOH HOH . D 4 HOH A 171 341 148 HOH HOH . D 4 HOH A 172 342 149 HOH HOH . D 4 HOH A 173 343 150 HOH HOH . D 4 HOH A 174 344 151 HOH HOH . D 4 HOH A 175 345 152 HOH HOH . D 4 HOH A 176 346 153 HOH HOH . D 4 HOH A 177 347 154 HOH HOH . D 4 HOH A 178 348 155 HOH HOH . D 4 HOH A 179 349 156 HOH HOH . D 4 HOH A 180 350 157 HOH HOH . D 4 HOH A 181 351 158 HOH HOH . D 4 HOH A 182 352 159 HOH HOH . D 4 HOH A 183 353 160 HOH HOH . D 4 HOH A 184 354 161 HOH HOH . D 4 HOH A 185 355 162 HOH HOH . D 4 HOH A 186 356 163 HOH HOH . D 4 HOH A 187 357 164 HOH HOH . D 4 HOH A 188 358 165 HOH HOH . D 4 HOH A 189 359 166 HOH HOH . D 4 HOH A 190 360 167 HOH HOH . D 4 HOH A 191 361 168 HOH HOH . D 4 HOH A 192 362 169 HOH HOH . D 4 HOH A 193 363 170 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 15.423 _atom_site.Cartn_y 49.417 _atom_site.Cartn_z 58.528 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 170 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #