data_3TRD # _model_server_result.job_id o0aX91iED538zKajZQcJpw _model_server_result.datetime_utc '2024-11-08 06:02:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3trd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":211}' # _entry.id 3TRD # _exptl.entry_id 3TRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TRD _cell.length_a 49.861 _cell.length_b 55.905 _cell.length_c 62.513 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 73 A GLY 70 1_555 E NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc2 A O GLY 75 A GLY 72 1_555 E NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc3 A O SER 77 A SER 74 1_555 E NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc4 A OG SER 113 A SER 110 1_555 D NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc5 B OXT ACT . A ACT 206 1_555 D NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc6 E NA NA . A NA 209 1_555 H O HOH . A HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc7 E NA NA . A NA 209 1_555 H O HOH . A HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 266 n n P O2 PO4 sing 267 n n P O3 PO4 sing 268 n n P O4 PO4 sing 269 n n # _atom_sites.entry_id 3TRD _atom_sites.fract_transf_matrix[1][1] 0.020056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 206 1 ACT ACT . C 2 ACT A 1 207 2 ACT ACT . D 3 NA A 1 208 1 NA NA . E 3 NA A 1 209 2 NA NA . F 4 PO4 A 1 210 1 PO4 PO4 . G 4 PO4 A 1 211 2 PO4 PO4 . H 5 HOH A 1 212 212 HOH HOH . H 5 HOH A 2 213 213 HOH HOH . H 5 HOH A 3 214 214 HOH HOH . H 5 HOH A 4 215 215 HOH HOH . H 5 HOH A 5 216 216 HOH HOH . H 5 HOH A 6 217 217 HOH HOH . H 5 HOH A 7 218 218 HOH HOH . H 5 HOH A 8 219 219 HOH HOH . H 5 HOH A 9 220 220 HOH HOH . H 5 HOH A 10 221 221 HOH HOH . H 5 HOH A 11 222 222 HOH HOH . H 5 HOH A 12 223 223 HOH HOH . H 5 HOH A 13 224 224 HOH HOH . H 5 HOH A 14 225 225 HOH HOH . H 5 HOH A 15 226 226 HOH HOH . H 5 HOH A 16 227 227 HOH HOH . H 5 HOH A 17 228 228 HOH HOH . H 5 HOH A 18 229 229 HOH HOH . H 5 HOH A 19 230 230 HOH HOH . H 5 HOH A 20 231 231 HOH HOH . H 5 HOH A 21 232 232 HOH HOH . H 5 HOH A 22 233 233 HOH HOH . H 5 HOH A 23 234 234 HOH HOH . H 5 HOH A 24 235 235 HOH HOH . H 5 HOH A 25 236 236 HOH HOH . H 5 HOH A 26 237 237 HOH HOH . H 5 HOH A 27 238 238 HOH HOH . H 5 HOH A 28 239 239 HOH HOH . H 5 HOH A 29 240 240 HOH HOH . H 5 HOH A 30 241 241 HOH HOH . H 5 HOH A 31 242 242 HOH HOH . H 5 HOH A 32 243 243 HOH HOH . H 5 HOH A 33 244 244 HOH HOH . H 5 HOH A 34 245 245 HOH HOH . H 5 HOH A 35 246 246 HOH HOH . H 5 HOH A 36 247 247 HOH HOH . H 5 HOH A 37 248 248 HOH HOH . H 5 HOH A 38 249 249 HOH HOH . H 5 HOH A 39 250 250 HOH HOH . H 5 HOH A 40 251 251 HOH HOH . H 5 HOH A 41 252 252 HOH HOH . H 5 HOH A 42 253 253 HOH HOH . H 5 HOH A 43 254 254 HOH HOH . H 5 HOH A 44 255 255 HOH HOH . H 5 HOH A 45 256 256 HOH HOH . H 5 HOH A 46 257 257 HOH HOH . H 5 HOH A 47 258 258 HOH HOH . H 5 HOH A 48 259 259 HOH HOH . H 5 HOH A 49 260 260 HOH HOH . H 5 HOH A 50 261 261 HOH HOH . H 5 HOH A 51 262 262 HOH HOH . H 5 HOH A 52 263 263 HOH HOH . H 5 HOH A 53 264 264 HOH HOH . H 5 HOH A 54 265 265 HOH HOH . H 5 HOH A 55 266 266 HOH HOH . H 5 HOH A 56 267 267 HOH HOH . H 5 HOH A 57 268 268 HOH HOH . H 5 HOH A 58 269 269 HOH HOH . H 5 HOH A 59 270 1 HOH HOH . H 5 HOH A 60 271 2 HOH HOH . H 5 HOH A 61 272 3 HOH HOH . H 5 HOH A 62 273 4 HOH HOH . H 5 HOH A 63 274 5 HOH HOH . H 5 HOH A 64 275 6 HOH HOH . H 5 HOH A 65 276 7 HOH HOH . H 5 HOH A 66 277 8 HOH HOH . H 5 HOH A 67 278 9 HOH HOH . H 5 HOH A 68 279 10 HOH HOH . H 5 HOH A 69 280 11 HOH HOH . H 5 HOH A 70 281 12 HOH HOH . H 5 HOH A 71 282 13 HOH HOH . H 5 HOH A 72 283 14 HOH HOH . H 5 HOH A 73 284 15 HOH HOH . H 5 HOH A 74 285 16 HOH HOH . H 5 HOH A 75 286 17 HOH HOH . H 5 HOH A 76 287 18 HOH HOH . H 5 HOH A 77 288 19 HOH HOH . H 5 HOH A 78 289 20 HOH HOH . H 5 HOH A 79 290 21 HOH HOH . H 5 HOH A 80 291 22 HOH HOH . H 5 HOH A 81 292 23 HOH HOH . H 5 HOH A 82 293 24 HOH HOH . H 5 HOH A 83 294 25 HOH HOH . H 5 HOH A 84 295 26 HOH HOH . H 5 HOH A 85 296 27 HOH HOH . H 5 HOH A 86 297 28 HOH HOH . H 5 HOH A 87 298 29 HOH HOH . H 5 HOH A 88 299 30 HOH HOH . H 5 HOH A 89 300 31 HOH HOH . H 5 HOH A 90 301 32 HOH HOH . H 5 HOH A 91 302 33 HOH HOH . H 5 HOH A 92 303 34 HOH HOH . H 5 HOH A 93 304 35 HOH HOH . H 5 HOH A 94 305 36 HOH HOH . H 5 HOH A 95 306 37 HOH HOH . H 5 HOH A 96 307 38 HOH HOH . H 5 HOH A 97 308 39 HOH HOH . H 5 HOH A 98 309 40 HOH HOH . H 5 HOH A 99 310 41 HOH HOH . H 5 HOH A 100 311 42 HOH HOH . H 5 HOH A 101 312 43 HOH HOH . H 5 HOH A 102 313 44 HOH HOH . H 5 HOH A 103 314 45 HOH HOH . H 5 HOH A 104 315 46 HOH HOH . H 5 HOH A 105 316 47 HOH HOH . H 5 HOH A 106 317 48 HOH HOH . H 5 HOH A 107 318 49 HOH HOH . H 5 HOH A 108 319 50 HOH HOH . H 5 HOH A 109 320 51 HOH HOH . H 5 HOH A 110 321 52 HOH HOH . H 5 HOH A 111 322 53 HOH HOH . H 5 HOH A 112 323 54 HOH HOH . H 5 HOH A 113 324 55 HOH HOH . H 5 HOH A 114 325 56 HOH HOH . H 5 HOH A 115 326 57 HOH HOH . H 5 HOH A 116 327 58 HOH HOH . H 5 HOH A 117 328 59 HOH HOH . H 5 HOH A 118 329 60 HOH HOH . H 5 HOH A 119 330 61 HOH HOH . H 5 HOH A 120 331 62 HOH HOH . H 5 HOH A 121 332 63 HOH HOH . H 5 HOH A 122 333 64 HOH HOH . H 5 HOH A 123 334 65 HOH HOH . H 5 HOH A 124 335 66 HOH HOH . H 5 HOH A 125 336 67 HOH HOH . H 5 HOH A 126 337 68 HOH HOH . H 5 HOH A 127 338 69 HOH HOH . H 5 HOH A 128 339 70 HOH HOH . H 5 HOH A 129 340 71 HOH HOH . H 5 HOH A 130 341 72 HOH HOH . H 5 HOH A 131 342 73 HOH HOH . H 5 HOH A 132 343 74 HOH HOH . H 5 HOH A 133 344 75 HOH HOH . H 5 HOH A 134 345 76 HOH HOH . H 5 HOH A 135 346 77 HOH HOH . H 5 HOH A 136 347 78 HOH HOH . H 5 HOH A 137 348 79 HOH HOH . H 5 HOH A 138 349 80 HOH HOH . H 5 HOH A 139 350 81 HOH HOH . H 5 HOH A 140 351 82 HOH HOH . H 5 HOH A 141 352 83 HOH HOH . H 5 HOH A 142 353 84 HOH HOH . H 5 HOH A 143 354 85 HOH HOH . H 5 HOH A 144 355 86 HOH HOH . H 5 HOH A 145 356 87 HOH HOH . H 5 HOH A 146 357 88 HOH HOH . H 5 HOH A 147 358 89 HOH HOH . H 5 HOH A 148 359 90 HOH HOH . H 5 HOH A 149 360 91 HOH HOH . H 5 HOH A 150 361 92 HOH HOH . H 5 HOH A 151 362 93 HOH HOH . H 5 HOH A 152 363 94 HOH HOH . H 5 HOH A 153 364 95 HOH HOH . H 5 HOH A 154 365 96 HOH HOH . H 5 HOH A 155 366 97 HOH HOH . H 5 HOH A 156 367 98 HOH HOH . H 5 HOH A 157 368 99 HOH HOH . H 5 HOH A 158 369 100 HOH HOH . H 5 HOH A 159 370 101 HOH HOH . H 5 HOH A 160 371 102 HOH HOH . H 5 HOH A 161 372 103 HOH HOH . H 5 HOH A 162 373 104 HOH HOH . H 5 HOH A 163 374 105 HOH HOH . H 5 HOH A 164 375 106 HOH HOH . H 5 HOH A 165 376 107 HOH HOH . H 5 HOH A 166 377 108 HOH HOH . H 5 HOH A 167 378 109 HOH HOH . H 5 HOH A 168 379 110 HOH HOH . H 5 HOH A 169 380 111 HOH HOH . H 5 HOH A 170 381 112 HOH HOH . H 5 HOH A 171 382 113 HOH HOH . H 5 HOH A 172 383 114 HOH HOH . H 5 HOH A 173 384 115 HOH HOH . H 5 HOH A 174 385 116 HOH HOH . H 5 HOH A 175 386 117 HOH HOH . H 5 HOH A 176 387 118 HOH HOH . H 5 HOH A 177 388 119 HOH HOH . H 5 HOH A 178 389 120 HOH HOH . H 5 HOH A 179 390 121 HOH HOH . H 5 HOH A 180 391 122 HOH HOH . H 5 HOH A 181 392 123 HOH HOH . H 5 HOH A 182 393 124 HOH HOH . H 5 HOH A 183 394 125 HOH HOH . H 5 HOH A 184 395 126 HOH HOH . H 5 HOH A 185 396 127 HOH HOH . H 5 HOH A 186 397 128 HOH HOH . H 5 HOH A 187 398 129 HOH HOH . H 5 HOH A 188 399 130 HOH HOH . H 5 HOH A 189 400 131 HOH HOH . H 5 HOH A 190 401 132 HOH HOH . H 5 HOH A 191 402 133 HOH HOH . H 5 HOH A 192 403 134 HOH HOH . H 5 HOH A 193 404 135 HOH HOH . H 5 HOH A 194 405 136 HOH HOH . H 5 HOH A 195 406 137 HOH HOH . H 5 HOH A 196 407 138 HOH HOH . H 5 HOH A 197 408 139 HOH HOH . H 5 HOH A 198 409 140 HOH HOH . H 5 HOH A 199 410 141 HOH HOH . H 5 HOH A 200 411 142 HOH HOH . H 5 HOH A 201 412 143 HOH HOH . H 5 HOH A 202 413 144 HOH HOH . H 5 HOH A 203 414 145 HOH HOH . H 5 HOH A 204 415 146 HOH HOH . H 5 HOH A 205 416 147 HOH HOH . H 5 HOH A 206 417 148 HOH HOH . H 5 HOH A 207 418 149 HOH HOH . H 5 HOH A 208 419 150 HOH HOH . H 5 HOH A 209 420 151 HOH HOH . H 5 HOH A 210 421 152 HOH HOH . H 5 HOH A 211 422 153 HOH HOH . H 5 HOH A 212 423 154 HOH HOH . H 5 HOH A 213 424 155 HOH HOH . H 5 HOH A 214 425 156 HOH HOH . H 5 HOH A 215 426 157 HOH HOH . H 5 HOH A 216 427 158 HOH HOH . H 5 HOH A 217 428 159 HOH HOH . H 5 HOH A 218 429 160 HOH HOH . H 5 HOH A 219 430 161 HOH HOH . H 5 HOH A 220 431 162 HOH HOH . H 5 HOH A 221 432 163 HOH HOH . H 5 HOH A 222 433 164 HOH HOH . H 5 HOH A 223 434 165 HOH HOH . H 5 HOH A 224 435 166 HOH HOH . H 5 HOH A 225 436 167 HOH HOH . H 5 HOH A 226 437 168 HOH HOH . H 5 HOH A 227 438 169 HOH HOH . H 5 HOH A 228 439 170 HOH HOH . H 5 HOH A 229 440 171 HOH HOH . H 5 HOH A 230 441 172 HOH HOH . H 5 HOH A 231 442 173 HOH HOH . H 5 HOH A 232 443 174 HOH HOH . H 5 HOH A 233 444 175 HOH HOH . H 5 HOH A 234 445 176 HOH HOH . H 5 HOH A 235 446 177 HOH HOH . H 5 HOH A 236 447 178 HOH HOH . H 5 HOH A 237 448 179 HOH HOH . H 5 HOH A 238 449 180 HOH HOH . H 5 HOH A 239 450 181 HOH HOH . H 5 HOH A 240 451 182 HOH HOH . H 5 HOH A 241 452 183 HOH HOH . H 5 HOH A 242 453 184 HOH HOH . H 5 HOH A 243 454 185 HOH HOH . H 5 HOH A 244 455 186 HOH HOH . H 5 HOH A 245 456 187 HOH HOH . H 5 HOH A 246 457 188 HOH HOH . H 5 HOH A 247 458 189 HOH HOH . H 5 HOH A 248 459 190 HOH HOH . H 5 HOH A 249 460 191 HOH HOH . H 5 HOH A 250 461 192 HOH HOH . H 5 HOH A 251 462 193 HOH HOH . H 5 HOH A 252 463 194 HOH HOH . H 5 HOH A 253 464 195 HOH HOH . H 5 HOH A 254 465 196 HOH HOH . H 5 HOH A 255 466 197 HOH HOH . H 5 HOH A 256 467 198 HOH HOH . H 5 HOH A 257 468 199 HOH HOH . H 5 HOH A 258 469 200 HOH HOH . H 5 HOH A 259 470 201 HOH HOH . H 5 HOH A 260 471 202 HOH HOH . H 5 HOH A 261 472 203 HOH HOH . H 5 HOH A 262 473 204 HOH HOH . H 5 HOH A 263 474 205 HOH HOH . H 5 HOH A 264 475 206 HOH HOH . H 5 HOH A 265 476 207 HOH HOH . H 5 HOH A 266 477 208 HOH HOH . H 5 HOH A 267 478 209 HOH HOH . H 5 HOH A 268 479 210 HOH HOH . H 5 HOH A 269 480 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 4 8.091 52.583 2.846 0.84 23.68 ? P PO4 211 A 1 HETATM 2 O O1 PO4 . . . G 4 9.511 53.043 2.578 0.84 14.87 ? O1 PO4 211 A 1 HETATM 3 O O2 PO4 . . . G 4 7.314 52.542 1.547 0.84 28.99 ? O2 PO4 211 A 1 HETATM 4 O O3 PO4 . . . G 4 8.124 51.218 3.482 0.84 30.18 ? O3 PO4 211 A 1 HETATM 5 O O4 PO4 . . . G 4 7.377 53.534 3.773 0.84 30.04 ? O4 PO4 211 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #