data_3TRT # _model_server_result.job_id 8Tk4nklIUqgStzbbz9n2kQ _model_server_result.datetime_utc '2024-12-26 19:16:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3trt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":6}' # _entry.id 3TRT # _exptl.entry_id 3TRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TRT _cell.length_a 53.419 _cell.length_b 75.521 _cell.length_c 86.859 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 265 1_555 B SG CYS 7 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A C ALA 10 A ALA 268 1_555 A N MSE 11 A MSE 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 11 A MSE 269 1_555 A N ARG 12 A ARG 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 A C THR 69 A THR 327 1_555 A N MSE 70 A MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale4 A C MSE 70 A MSE 328 1_555 A N GLU 71 A GLU 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale5 B C ALA 10 B ALA 268 1_555 B N MSE 11 B MSE 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 B C MSE 11 B MSE 269 1_555 B N ARG 12 B ARG 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale7 B C THR 69 B THR 327 1_555 B N MSE 70 B MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale8 B C MSE 70 B MSE 328 1_555 B N GLU 71 B GLU 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3TRT _atom_sites.fract_transf_matrix[1][1] 0.01872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 2 2 SO4 SO4 . D 2 SO4 A 1 4 4 SO4 SO4 . E 3 GOL A 1 7 7 GOL GOL . F 4 NH4 A 1 8 8 NH4 NH4 . G 2 SO4 B 1 1 1 SO4 SO4 . H 2 SO4 B 1 3 3 SO4 SO4 . I 3 GOL B 1 5 5 GOL GOL . J 3 GOL B 1 6 6 GOL GOL . K 5 HOH A 1 14 14 HOH HOH . K 5 HOH A 2 16 16 HOH HOH . K 5 HOH A 3 17 17 HOH HOH . K 5 HOH A 4 19 19 HOH HOH . K 5 HOH A 5 20 20 HOH HOH . K 5 HOH A 6 24 24 HOH HOH . K 5 HOH A 7 26 26 HOH HOH . K 5 HOH A 8 27 27 HOH HOH . K 5 HOH A 9 32 32 HOH HOH . K 5 HOH A 10 34 34 HOH HOH . K 5 HOH A 11 36 36 HOH HOH . K 5 HOH A 12 38 38 HOH HOH . L 5 HOH B 1 9 9 HOH HOH . L 5 HOH B 2 10 10 HOH HOH . L 5 HOH B 3 11 11 HOH HOH . L 5 HOH B 4 12 12 HOH HOH . L 5 HOH B 5 13 13 HOH HOH . L 5 HOH B 6 15 15 HOH HOH . L 5 HOH B 7 18 18 HOH HOH . L 5 HOH B 8 21 21 HOH HOH . L 5 HOH B 9 22 22 HOH HOH . L 5 HOH B 10 23 23 HOH HOH . L 5 HOH B 11 25 25 HOH HOH . L 5 HOH B 12 28 28 HOH HOH . L 5 HOH B 13 30 30 HOH HOH . L 5 HOH B 14 31 31 HOH HOH . L 5 HOH B 15 33 33 HOH HOH . L 5 HOH B 16 35 35 HOH HOH . L 5 HOH B 17 37 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 3 9.778 5.453 112.904 1 53.07 ? C1 GOL 6 B 1 HETATM 2 O O1 GOL . . . J 3 8.543 5.255 113.554 1 53.82 ? O1 GOL 6 B 1 HETATM 3 C C2 GOL . . . J 3 10.841 5.044 113.878 1 45.48 ? C2 GOL 6 B 1 HETATM 4 O O2 GOL . . . J 3 10.181 4.819 115.096 1 50.14 ? O2 GOL 6 B 1 HETATM 5 C C3 GOL . . . J 3 11.928 6.085 113.949 1 46.12 ? C3 GOL 6 B 1 HETATM 6 O O3 GOL . . . J 3 12.781 5.817 112.86 1 52.08 ? O3 GOL 6 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 490 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #