data_3TRU # _model_server_result.job_id J2NY6kn33sR_pgZrMnK_aw _model_server_result.datetime_utc '2025-07-27 18:52:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":172}' # _entry.id 3TRU # _exptl.entry_id 3TRU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TRU _cell.length_a 89.54 _cell.length_b 100.59 _cell.length_c 163.13 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 22 A CYS 22 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 A SG CYS 43 A CYS 43 1_555 A SG CYS 49 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 B SG CYS 6 B CYS 6 1_555 B SG CYS 130 B CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 67 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 43 B CYS 43 1_555 B SG CYS 49 B CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 C SG CYS 6 C CYS 6 1_555 C SG CYS 130 C CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf8 C SG CYS 22 C CYS 22 1_555 C SG CYS 67 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 C SG CYS 43 C CYS 43 1_555 C SG CYS 49 C CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf10 D SG CYS 6 D CYS 6 1_555 D SG CYS 130 D CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf11 D SG CYS 22 D CYS 22 1_555 D SG CYS 67 D CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 D SG CYS 43 D CYS 43 1_555 D SG CYS 49 D CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3TRU _atom_sites.fract_transf_matrix[1][1] 0.011168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TLA C 1 172 172 TLA TLA . F 3 GOL D 1 172 172 GOL GOL . G 4 ISJ D 1 173 1 ISJ JJJ . H 5 HOH A 1 172 172 HOH HOH . H 5 HOH A 2 173 173 HOH HOH . H 5 HOH A 3 174 174 HOH HOH . H 5 HOH A 4 175 175 HOH HOH . H 5 HOH A 5 176 176 HOH HOH . H 5 HOH A 6 177 177 HOH HOH . H 5 HOH A 7 178 178 HOH HOH . H 5 HOH A 8 179 179 HOH HOH . H 5 HOH A 9 181 181 HOH HOH . H 5 HOH A 10 182 182 HOH HOH . H 5 HOH A 11 183 183 HOH HOH . H 5 HOH A 12 184 184 HOH HOH . H 5 HOH A 13 185 185 HOH HOH . H 5 HOH A 14 186 186 HOH HOH . H 5 HOH A 15 187 187 HOH HOH . H 5 HOH A 16 188 188 HOH HOH . H 5 HOH A 17 189 189 HOH HOH . H 5 HOH A 18 190 190 HOH HOH . H 5 HOH A 19 191 191 HOH HOH . H 5 HOH A 20 192 192 HOH HOH . I 5 HOH B 1 172 172 HOH HOH . I 5 HOH B 2 173 173 HOH HOH . I 5 HOH B 3 174 174 HOH HOH . I 5 HOH B 4 175 175 HOH HOH . I 5 HOH B 5 176 176 HOH HOH . I 5 HOH B 6 177 177 HOH HOH . I 5 HOH B 7 178 178 HOH HOH . I 5 HOH B 8 179 179 HOH HOH . I 5 HOH B 9 180 180 HOH HOH . I 5 HOH B 10 181 181 HOH HOH . I 5 HOH B 11 182 182 HOH HOH . I 5 HOH B 12 183 183 HOH HOH . I 5 HOH B 13 184 184 HOH HOH . I 5 HOH B 14 185 185 HOH HOH . I 5 HOH B 15 186 186 HOH HOH . I 5 HOH B 16 188 188 HOH HOH . I 5 HOH B 17 189 189 HOH HOH . I 5 HOH B 18 190 190 HOH HOH . J 5 HOH C 1 173 173 HOH HOH . J 5 HOH C 2 174 174 HOH HOH . J 5 HOH C 3 175 175 HOH HOH . J 5 HOH C 4 176 176 HOH HOH . J 5 HOH C 5 177 177 HOH HOH . J 5 HOH C 6 178 178 HOH HOH . J 5 HOH C 7 179 179 HOH HOH . J 5 HOH C 8 180 180 HOH HOH . J 5 HOH C 9 181 181 HOH HOH . J 5 HOH C 10 182 182 HOH HOH . J 5 HOH C 11 183 183 HOH HOH . J 5 HOH C 12 184 184 HOH HOH . J 5 HOH C 13 185 185 HOH HOH . J 5 HOH C 14 186 186 HOH HOH . J 5 HOH C 15 187 187 HOH HOH . J 5 HOH C 16 188 188 HOH HOH . K 5 HOH D 1 174 174 HOH HOH . K 5 HOH D 2 175 175 HOH HOH . K 5 HOH D 3 176 176 HOH HOH . K 5 HOH D 4 177 177 HOH HOH . K 5 HOH D 5 178 178 HOH HOH . K 5 HOH D 6 179 179 HOH HOH . K 5 HOH D 7 181 181 HOH HOH . K 5 HOH D 8 182 173 HOH HOH . K 5 HOH D 9 183 183 HOH HOH . K 5 HOH D 10 184 184 HOH HOH . K 5 HOH D 11 185 185 HOH HOH . K 5 HOH D 12 186 186 HOH HOH . K 5 HOH D 13 187 187 HOH HOH . K 5 HOH D 14 188 180 HOH HOH . K 5 HOH D 15 189 189 HOH HOH . K 5 HOH D 16 190 190 HOH HOH . K 5 HOH D 17 191 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -34.55 -20.281 -11.628 1 49.37 ? C1 GOL 172 D 1 HETATM 2 O O1 GOL . . . F 3 -34.287 -20.782 -10.355 1 49.8 ? O1 GOL 172 D 1 HETATM 3 C C2 GOL . . . F 3 -33.35 -20.543 -12.484 1 48.72 ? C2 GOL 172 D 1 HETATM 4 O O2 GOL . . . F 3 -33.375 -21.919 -12.717 1 48.05 ? O2 GOL 172 D 1 HETATM 5 C C3 GOL . . . F 3 -33.527 -19.666 -13.717 1 48.42 ? C3 GOL 172 D 1 HETATM 6 O O3 GOL . . . F 3 -32.529 -19.812 -14.694 1 45.46 ? O3 GOL 172 D 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #