data_3TS1 # _model_server_result.job_id v809pPypv7rZQss8yVE1CA _model_server_result.datetime_utc '2025-03-06 08:40:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ts1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":420}' # _entry.id 3TS1 # _exptl.entry_id 3TS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.403 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PHOSPHORIC ACID 2-AMINO-3-(4-HYDROXY-PHENYL)-PROPYL ESTER ADENOSIN-5'YL ESTER" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TS1 _cell.length_a 64.63 _cell.length_b 64.63 _cell.length_c 238.9 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 N6 O8 P -1' _chem_comp.formula_weight 495.403 _chem_comp.id TYA _chem_comp.mon_nstd_flag . _chem_comp.name "PHOSPHORIC ACID 2-AMINO-3-(4-HYDROXY-PHENYL)-PROPYL ESTER ADENOSIN-5'YL ESTER" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OPP P TYA sing 334 n n OPP C TYA sing 335 n n P O1P TYA doub 336 n n P O2P TYA sing 337 n n P O5' TYA sing 338 n n O5' C5' TYA sing 339 n n C5' C4' TYA sing 340 n n C5' "H5'1" TYA sing 341 n n C5' "H5'2" TYA sing 342 n n C4' O4' TYA sing 343 n n C4' C3' TYA sing 344 n n C4' H4' TYA sing 345 n n O4' C1' TYA sing 346 n n C3' O3' TYA sing 347 n n C3' C2' TYA sing 348 n n C3' H3' TYA sing 349 n n O3' "HO'3" TYA sing 350 n n C2' O2' TYA sing 351 n n C2' C1' TYA sing 352 n n C2' H2' TYA sing 353 n n O2' "HO'2" TYA sing 354 n n C1' N9 TYA sing 355 n n C1' H1' TYA sing 356 n n N9 C8 TYA sing 357 n y N9 C4 TYA sing 358 n y C8 N7 TYA doub 359 n y C8 H8 TYA sing 360 n n N7 C5 TYA sing 361 n y C5 C6 TYA sing 362 n y C5 C4 TYA doub 363 n y C6 N6 TYA sing 364 n n C6 N1 TYA doub 365 n y N6 H61 TYA sing 366 n n N6 H62 TYA sing 367 n n N1 C2 TYA sing 368 n y C2 N3 TYA doub 369 n y C2 H2 TYA sing 370 n n N3 C4 TYA sing 371 n y NH2 CA TYA sing 372 n n NH2 HN1 TYA sing 373 n n NH2 HN2 TYA sing 374 n n CA C TYA sing 375 n n CA CB TYA sing 376 n n CA HA TYA sing 377 n n C H1 TYA sing 378 n n C H2A TYA sing 379 n n CB CG TYA sing 380 n n CB HB1 TYA sing 381 n n CB HB2 TYA sing 382 n n CG CD1 TYA doub 383 n y CG CD2 TYA sing 384 n y CD1 CE1 TYA sing 385 n y CD1 HD1 TYA sing 386 n n CD2 CE2 TYA doub 387 n y CD2 HD2 TYA sing 388 n n CE1 CZ TYA doub 389 n y CE1 HE1 TYA sing 390 n n CE2 CZ TYA sing 391 n y CE2 HE2 TYA sing 392 n n CZ OH TYA sing 393 n n OH HH TYA sing 394 n n # _atom_sites.entry_id 3TS1 _atom_sites.fract_transf_matrix[1][1] 0.015473 _atom_sites.fract_transf_matrix[1][2] 0.008933 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TYA A 1 420 321 TYA TYA . C 3 HOH A 1 421 324 HOH HOH . C 3 HOH A 2 422 325 HOH HOH . C 3 HOH A 3 423 326 HOH HOH . C 3 HOH A 4 424 327 HOH HOH . C 3 HOH A 5 425 328 HOH HOH . C 3 HOH A 6 426 329 HOH HOH . C 3 HOH A 7 427 330 HOH HOH . C 3 HOH A 8 428 331 HOH HOH . C 3 HOH A 9 429 332 HOH HOH . C 3 HOH A 10 430 333 HOH HOH . C 3 HOH A 11 431 334 HOH HOH . C 3 HOH A 12 432 335 HOH HOH . C 3 HOH A 13 433 336 HOH HOH . C 3 HOH A 14 434 337 HOH HOH . C 3 HOH A 15 435 338 HOH HOH . C 3 HOH A 16 436 340 HOH HOH . C 3 HOH A 17 437 341 HOH HOH . C 3 HOH A 18 438 342 HOH HOH . C 3 HOH A 19 439 343 HOH HOH . C 3 HOH A 20 440 344 HOH HOH . C 3 HOH A 21 441 345 HOH HOH . C 3 HOH A 22 442 348 HOH HOH . C 3 HOH A 23 443 349 HOH HOH . C 3 HOH A 24 444 350 HOH HOH . C 3 HOH A 25 445 351 HOH HOH . C 3 HOH A 26 446 352 HOH HOH . C 3 HOH A 27 447 353 HOH HOH . C 3 HOH A 28 448 354 HOH HOH . C 3 HOH A 29 449 355 HOH HOH . C 3 HOH A 30 450 356 HOH HOH . C 3 HOH A 31 451 358 HOH HOH . C 3 HOH A 32 452 359 HOH HOH . C 3 HOH A 33 453 360 HOH HOH . C 3 HOH A 34 454 361 HOH HOH . C 3 HOH A 35 455 362 HOH HOH . C 3 HOH A 36 456 363 HOH HOH . C 3 HOH A 37 457 364 HOH HOH . C 3 HOH A 38 458 365 HOH HOH . C 3 HOH A 39 459 366 HOH HOH . C 3 HOH A 40 460 367 HOH HOH . C 3 HOH A 41 461 368 HOH HOH . C 3 HOH A 42 462 369 HOH HOH . C 3 HOH A 43 463 370 HOH HOH . C 3 HOH A 44 464 371 HOH HOH . C 3 HOH A 45 465 372 HOH HOH . C 3 HOH A 46 466 373 HOH HOH . C 3 HOH A 47 467 374 HOH HOH . C 3 HOH A 48 468 375 HOH HOH . C 3 HOH A 49 469 376 HOH HOH . C 3 HOH A 50 470 377 HOH HOH . C 3 HOH A 51 471 379 HOH HOH . C 3 HOH A 52 472 381 HOH HOH . C 3 HOH A 53 473 388 HOH HOH . C 3 HOH A 54 474 389 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OPP TYA . . . B 2 -12.327 14.459 -6.988 1 23.53 ? OPP TYA 420 A 1 HETATM 2 P P TYA . . . B 2 -13.255 15.253 -7.946 1 29.13 ? P TYA 420 A 1 HETATM 3 O O1P TYA . . . B 2 -12.653 16.156 -8.95 1 29.74 ? O1P TYA 420 A 1 HETATM 4 O O2P TYA . . . B 2 -13.968 14.465 -8.955 1 33.82 ? O2P TYA 420 A 1 HETATM 5 O O5' TYA . . . B 2 -14.26 16.043 -7.037 1 25.21 ? O5' TYA 420 A 1 HETATM 6 C C5' TYA . . . B 2 -15.361 16.739 -7.598 1 24.23 ? C5' TYA 420 A 1 HETATM 7 C C4' TYA . . . B 2 -16.441 16.754 -6.482 1 24.58 ? C4' TYA 420 A 1 HETATM 8 O O4' TYA . . . B 2 -17.679 16.671 -7.25 1 25.61 ? O4' TYA 420 A 1 HETATM 9 C C3' TYA . . . B 2 -16.433 15.52 -5.573 1 22.88 ? C3' TYA 420 A 1 HETATM 10 O O3' TYA . . . B 2 -17.053 15.7 -4.327 1 21.6 ? O3' TYA 420 A 1 HETATM 11 C C2' TYA . . . B 2 -17.238 14.476 -6.364 1 22.76 ? C2' TYA 420 A 1 HETATM 12 O O2' TYA . . . B 2 -17.919 13.588 -5.446 1 16 ? O2' TYA 420 A 1 HETATM 13 C C1' TYA . . . B 2 -18.167 15.379 -7.103 1 24.65 ? C1' TYA 420 A 1 HETATM 14 N N9 TYA . . . B 2 -18.961 14.93 -8.211 1 23.73 ? N9 TYA 420 A 1 HETATM 15 C C8 TYA . . . B 2 -18.664 14.706 -9.509 1 24.92 ? C8 TYA 420 A 1 HETATM 16 N N7 TYA . . . B 2 -19.709 14.304 -10.239 1 25.02 ? N7 TYA 420 A 1 HETATM 17 C C5 TYA . . . B 2 -20.741 14.238 -9.313 1 25.18 ? C5 TYA 420 A 1 HETATM 18 C C6 TYA . . . B 2 -22.113 13.909 -9.454 1 25.07 ? C6 TYA 420 A 1 HETATM 19 N N6 TYA . . . B 2 -22.699 13.503 -10.582 1 24.61 ? N6 TYA 420 A 1 HETATM 20 N N1 TYA . . . B 2 -22.863 13.986 -8.319 1 25.09 ? N1 TYA 420 A 1 HETATM 21 C C2 TYA . . . B 2 -22.292 14.424 -7.159 1 24.67 ? C2 TYA 420 A 1 HETATM 22 N N3 TYA . . . B 2 -21.069 14.764 -6.954 1 25.61 ? N3 TYA 420 A 1 HETATM 23 C C4 TYA . . . B 2 -20.321 14.655 -8.085 1 24.15 ? C4 TYA 420 A 1 HETATM 24 N NH2 TYA . . . B 2 -10.524 13.677 -4.976 1 18.09 ? NH2 TYA 420 A 1 HETATM 25 C CA TYA . . . B 2 -11.562 14.685 -4.654 1 18.9 ? CA TYA 420 A 1 HETATM 26 C C TYA . . . B 2 -12.718 14.502 -5.6 1 19.83 ? C TYA 420 A 1 HETATM 27 C CB TYA . . . B 2 -10.944 16.079 -4.715 1 18.64 ? CB TYA 420 A 1 HETATM 28 C CG TYA . . . B 2 -10.308 16.421 -3.507 1 17.33 ? CG TYA 420 A 1 HETATM 29 C CD1 TYA . . . B 2 -11.052 16.448 -2.337 1 16.14 ? CD1 TYA 420 A 1 HETATM 30 C CD2 TYA . . . B 2 -8.935 16.743 -3.453 1 16.37 ? CD2 TYA 420 A 1 HETATM 31 C CE1 TYA . . . B 2 -10.456 16.807 -1.126 1 14.67 ? CE1 TYA 420 A 1 HETATM 32 C CE2 TYA . . . B 2 -8.331 17.059 -2.23 1 12.42 ? CE2 TYA 420 A 1 HETATM 33 C CZ TYA . . . B 2 -9.095 17.104 -1.07 1 12.2 ? CZ TYA 420 A 1 HETATM 34 O OH TYA . . . B 2 -8.584 17.42 0.142 1 10.79 ? OH TYA 420 A 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #