data_3TSB # _model_server_result.job_id z7XnxW64bZt6dq2YZj12ug _model_server_result.datetime_utc '2024-11-28 22:20:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tsb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3TSB # _exptl.entry_id 3TSB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TSB _cell.length_a 123.026 _cell.length_b 123.026 _cell.length_c 140.718 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TSB _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1,2,3,4 B,E,G 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3TSB _atom_sites.fract_transf_matrix[1][1] 0.008128 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 500 500 PO4 PO4 . D 2 PO4 A 1 501 501 PO4 PO4 . E 2 PO4 B 1 500 500 PO4 PO4 . F 3 HOH A 1 488 1 HOH HOH . F 3 HOH A 2 489 3 HOH HOH . F 3 HOH A 3 490 4 HOH HOH . F 3 HOH A 4 491 6 HOH HOH . F 3 HOH A 5 492 9 HOH HOH . F 3 HOH A 6 493 10 HOH HOH . F 3 HOH A 7 494 14 HOH HOH . F 3 HOH A 8 495 15 HOH HOH . F 3 HOH A 9 496 16 HOH HOH . F 3 HOH A 10 497 19 HOH HOH . F 3 HOH A 11 498 21 HOH HOH . F 3 HOH A 12 499 22 HOH HOH . F 3 HOH A 13 502 23 HOH HOH . F 3 HOH A 14 503 24 HOH HOH . F 3 HOH A 15 504 25 HOH HOH . F 3 HOH A 16 505 28 HOH HOH . F 3 HOH A 17 506 29 HOH HOH . F 3 HOH A 18 507 31 HOH HOH . F 3 HOH A 19 508 32 HOH HOH . F 3 HOH A 20 509 33 HOH HOH . F 3 HOH A 21 510 34 HOH HOH . F 3 HOH A 22 511 35 HOH HOH . F 3 HOH A 23 512 36 HOH HOH . F 3 HOH A 24 513 37 HOH HOH . F 3 HOH A 25 514 42 HOH HOH . F 3 HOH A 26 515 44 HOH HOH . F 3 HOH A 27 516 45 HOH HOH . F 3 HOH A 28 517 46 HOH HOH . F 3 HOH A 29 518 47 HOH HOH . F 3 HOH A 30 519 48 HOH HOH . F 3 HOH A 31 520 50 HOH HOH . F 3 HOH A 32 521 54 HOH HOH . F 3 HOH A 33 522 55 HOH HOH . F 3 HOH A 34 523 56 HOH HOH . F 3 HOH A 35 524 59 HOH HOH . F 3 HOH A 36 525 60 HOH HOH . F 3 HOH A 37 526 61 HOH HOH . F 3 HOH A 38 527 62 HOH HOH . F 3 HOH A 39 528 64 HOH HOH . F 3 HOH A 40 529 66 HOH HOH . F 3 HOH A 41 530 68 HOH HOH . F 3 HOH A 42 531 70 HOH HOH . F 3 HOH A 43 532 72 HOH HOH . F 3 HOH A 44 533 75 HOH HOH . F 3 HOH A 45 534 76 HOH HOH . F 3 HOH A 46 535 77 HOH HOH . F 3 HOH A 47 536 78 HOH HOH . F 3 HOH A 48 537 79 HOH HOH . F 3 HOH A 49 538 80 HOH HOH . F 3 HOH A 50 539 81 HOH HOH . F 3 HOH A 51 540 82 HOH HOH . F 3 HOH A 52 541 84 HOH HOH . F 3 HOH A 53 542 92 HOH HOH . F 3 HOH A 54 543 93 HOH HOH . F 3 HOH A 55 544 94 HOH HOH . F 3 HOH A 56 545 98 HOH HOH . F 3 HOH A 57 546 100 HOH HOH . F 3 HOH A 58 547 102 HOH HOH . F 3 HOH A 59 548 104 HOH HOH . F 3 HOH A 60 549 105 HOH HOH . F 3 HOH A 61 550 107 HOH HOH . F 3 HOH A 62 551 108 HOH HOH . F 3 HOH A 63 552 109 HOH HOH . F 3 HOH A 64 553 110 HOH HOH . F 3 HOH A 65 554 111 HOH HOH . F 3 HOH A 66 555 112 HOH HOH . F 3 HOH A 67 556 118 HOH HOH . F 3 HOH A 68 557 119 HOH HOH . F 3 HOH A 69 558 120 HOH HOH . F 3 HOH A 70 559 121 HOH HOH . F 3 HOH A 71 560 122 HOH HOH . F 3 HOH A 72 561 124 HOH HOH . G 3 HOH B 1 488 2 HOH HOH . G 3 HOH B 2 489 5 HOH HOH . G 3 HOH B 3 490 7 HOH HOH . G 3 HOH B 4 491 8 HOH HOH . G 3 HOH B 5 492 11 HOH HOH . G 3 HOH B 6 493 12 HOH HOH . G 3 HOH B 7 494 13 HOH HOH . G 3 HOH B 8 495 17 HOH HOH . G 3 HOH B 9 496 18 HOH HOH . G 3 HOH B 10 497 20 HOH HOH . G 3 HOH B 11 498 26 HOH HOH . G 3 HOH B 12 499 27 HOH HOH . G 3 HOH B 13 501 30 HOH HOH . G 3 HOH B 14 502 38 HOH HOH . G 3 HOH B 15 503 39 HOH HOH . G 3 HOH B 16 504 40 HOH HOH . G 3 HOH B 17 505 41 HOH HOH . G 3 HOH B 18 506 43 HOH HOH . G 3 HOH B 19 507 49 HOH HOH . G 3 HOH B 20 508 51 HOH HOH . G 3 HOH B 21 509 52 HOH HOH . G 3 HOH B 22 510 53 HOH HOH . G 3 HOH B 23 511 57 HOH HOH . G 3 HOH B 24 512 58 HOH HOH . G 3 HOH B 25 513 63 HOH HOH . G 3 HOH B 26 514 65 HOH HOH . G 3 HOH B 27 515 67 HOH HOH . G 3 HOH B 28 516 69 HOH HOH . G 3 HOH B 29 517 71 HOH HOH . G 3 HOH B 30 518 73 HOH HOH . G 3 HOH B 31 519 74 HOH HOH . G 3 HOH B 32 520 83 HOH HOH . G 3 HOH B 33 521 85 HOH HOH . G 3 HOH B 34 522 86 HOH HOH . G 3 HOH B 35 523 87 HOH HOH . G 3 HOH B 36 524 88 HOH HOH . G 3 HOH B 37 525 89 HOH HOH . G 3 HOH B 38 526 90 HOH HOH . G 3 HOH B 39 527 91 HOH HOH . G 3 HOH B 40 528 95 HOH HOH . G 3 HOH B 41 529 96 HOH HOH . G 3 HOH B 42 530 97 HOH HOH . G 3 HOH B 43 531 99 HOH HOH . G 3 HOH B 44 532 101 HOH HOH . G 3 HOH B 45 533 103 HOH HOH . G 3 HOH B 46 534 106 HOH HOH . G 3 HOH B 47 535 113 HOH HOH . G 3 HOH B 48 536 114 HOH HOH . G 3 HOH B 49 537 115 HOH HOH . G 3 HOH B 50 538 116 HOH HOH . G 3 HOH B 51 539 117 HOH HOH . G 3 HOH B 52 540 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 -38.673 -24.807 -6.213 1 118.7 ? P PO4 501 A 1 HETATM 2 O O1 PO4 . . . D 2 -37.398 -24.027 -5.967 1 117.42 ? O1 PO4 501 A 1 HETATM 3 O O2 PO4 . . . D 2 -39.338 -24.252 -7.445 1 120.72 ? O2 PO4 501 A 1 HETATM 4 O O3 PO4 . . . D 2 -38.349 -26.254 -6.492 1 117.52 ? O3 PO4 501 A 1 HETATM 5 O O4 PO4 . . . D 2 -39.621 -24.693 -5.035 1 116.47 ? O4 PO4 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #