data_3TSD # _model_server_result.job_id Avr8uFResSjs7qmHfqqqdw _model_server_result.datetime_utc '2024-11-25 05:02:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3TSD # _exptl.entry_id 3TSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TSD _cell.length_a 123.25 _cell.length_b 123.25 _cell.length_c 141.636 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1,2,3,4 B,D,E,F,H 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -123.25 123.25 0 3 'crystal symmetry operation' 3_565 -y,x+1,z 0 -1 0 1 0 0 0 0 1 0 123.25 0 4 'crystal symmetry operation' 4_455 y-1,-x,z 0 1 0 -1 0 0 0 0 1 -123.25 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 294 n n O11 C1 TAR sing 295 n n O11 HO1 TAR sing 296 n n C1 C2 TAR sing 297 n n C2 O2 TAR sing 298 n n C2 C3 TAR sing 299 n n C2 H2 TAR sing 300 n n O2 HO2 TAR sing 301 n n C3 O3 TAR sing 302 n n C3 C4 TAR sing 303 n n C3 H3 TAR sing 304 n n O3 HO3 TAR sing 305 n n C4 O4 TAR doub 306 n n C4 O41 TAR sing 307 n n O41 HO4 TAR sing 308 n n # _atom_sites.entry_id 3TSD _atom_sites.fract_transf_matrix[1][1] 0.008114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XMP A 1 500 500 XMP XMP . D 2 XMP B 1 500 500 XMP XMP . E 3 TAR B 1 501 501 TAR TAR . F 4 SO4 B 1 502 502 SO4 SO4 . G 5 HOH A 1 488 1 HOH HOH . G 5 HOH A 2 489 6 HOH HOH . G 5 HOH A 3 490 7 HOH HOH . G 5 HOH A 4 491 9 HOH HOH . G 5 HOH A 5 492 10 HOH HOH . G 5 HOH A 6 493 11 HOH HOH . G 5 HOH A 7 494 16 HOH HOH . G 5 HOH A 8 495 18 HOH HOH . G 5 HOH A 9 496 20 HOH HOH . G 5 HOH A 10 497 21 HOH HOH . G 5 HOH A 11 498 22 HOH HOH . G 5 HOH A 12 499 26 HOH HOH . G 5 HOH A 13 501 27 HOH HOH . G 5 HOH A 14 502 28 HOH HOH . G 5 HOH A 15 503 31 HOH HOH . G 5 HOH A 16 504 32 HOH HOH . G 5 HOH A 17 505 33 HOH HOH . G 5 HOH A 18 506 34 HOH HOH . G 5 HOH A 19 507 35 HOH HOH . G 5 HOH A 20 508 36 HOH HOH . G 5 HOH A 21 509 38 HOH HOH . G 5 HOH A 22 510 40 HOH HOH . G 5 HOH A 23 511 44 HOH HOH . G 5 HOH A 24 512 47 HOH HOH . G 5 HOH A 25 513 50 HOH HOH . G 5 HOH A 26 514 53 HOH HOH . G 5 HOH A 27 515 54 HOH HOH . G 5 HOH A 28 516 57 HOH HOH . G 5 HOH A 29 517 58 HOH HOH . G 5 HOH A 30 518 59 HOH HOH . G 5 HOH A 31 519 60 HOH HOH . G 5 HOH A 32 520 61 HOH HOH . G 5 HOH A 33 521 62 HOH HOH . G 5 HOH A 34 522 63 HOH HOH . G 5 HOH A 35 523 64 HOH HOH . G 5 HOH A 36 524 65 HOH HOH . G 5 HOH A 37 525 66 HOH HOH . G 5 HOH A 38 526 67 HOH HOH . G 5 HOH A 39 527 68 HOH HOH . G 5 HOH A 40 528 69 HOH HOH . G 5 HOH A 41 529 86 HOH HOH . G 5 HOH A 42 530 87 HOH HOH . G 5 HOH A 43 531 88 HOH HOH . G 5 HOH A 44 532 89 HOH HOH . G 5 HOH A 45 533 90 HOH HOH . G 5 HOH A 46 534 91 HOH HOH . G 5 HOH A 47 535 92 HOH HOH . G 5 HOH A 48 536 93 HOH HOH . G 5 HOH A 49 537 94 HOH HOH . H 5 HOH B 1 488 2 HOH HOH . H 5 HOH B 2 489 3 HOH HOH . H 5 HOH B 3 490 4 HOH HOH . H 5 HOH B 4 491 5 HOH HOH . H 5 HOH B 5 492 8 HOH HOH . H 5 HOH B 6 493 12 HOH HOH . H 5 HOH B 7 494 13 HOH HOH . H 5 HOH B 8 495 14 HOH HOH . H 5 HOH B 9 496 15 HOH HOH . H 5 HOH B 10 497 17 HOH HOH . H 5 HOH B 11 498 19 HOH HOH . H 5 HOH B 12 499 23 HOH HOH . H 5 HOH B 13 503 24 HOH HOH . H 5 HOH B 14 504 25 HOH HOH . H 5 HOH B 15 505 29 HOH HOH . H 5 HOH B 16 506 30 HOH HOH . H 5 HOH B 17 507 37 HOH HOH . H 5 HOH B 18 508 39 HOH HOH . H 5 HOH B 19 509 41 HOH HOH . H 5 HOH B 20 510 42 HOH HOH . H 5 HOH B 21 511 43 HOH HOH . H 5 HOH B 22 512 45 HOH HOH . H 5 HOH B 23 513 46 HOH HOH . H 5 HOH B 24 514 48 HOH HOH . H 5 HOH B 25 515 49 HOH HOH . H 5 HOH B 26 516 51 HOH HOH . H 5 HOH B 27 517 52 HOH HOH . H 5 HOH B 28 518 55 HOH HOH . H 5 HOH B 29 519 56 HOH HOH . H 5 HOH B 30 520 70 HOH HOH . H 5 HOH B 31 521 71 HOH HOH . H 5 HOH B 32 522 72 HOH HOH . H 5 HOH B 33 523 73 HOH HOH . H 5 HOH B 34 524 74 HOH HOH . H 5 HOH B 35 525 75 HOH HOH . H 5 HOH B 36 526 76 HOH HOH . H 5 HOH B 37 527 77 HOH HOH . H 5 HOH B 38 528 78 HOH HOH . H 5 HOH B 39 529 79 HOH HOH . H 5 HOH B 40 530 80 HOH HOH . H 5 HOH B 41 531 81 HOH HOH . H 5 HOH B 42 532 82 HOH HOH . H 5 HOH B 43 533 83 HOH HOH . H 5 HOH B 44 534 84 HOH HOH . H 5 HOH B 45 535 85 HOH HOH . H 5 HOH B 46 536 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TAR . . . E 3 -28.479 -2.691 30.178 1 108.39 ? O1 TAR 501 B 1 HETATM 2 O O11 TAR . . . E 3 -30.097 -1.26 30.224 1 108.56 ? O11 TAR 501 B 1 HETATM 3 C C1 TAR . . . E 3 -29.391 -2.077 29.562 1 117.03 ? C1 TAR 501 B 1 HETATM 4 C C2 TAR . . . E 3 -29.646 -2.322 28.09 1 127.39 ? C2 TAR 501 B 1 HETATM 5 O O2 TAR . . . E 3 -30.591 -1.424 27.635 1 128.01 ? O2 TAR 501 B 1 HETATM 6 C C3 TAR . . . E 3 -28.42 -2.18 27.248 1 127.88 ? C3 TAR 501 B 1 HETATM 7 O O3 TAR . . . E 3 -27.901 -0.92 27.449 1 128.33 ? O3 TAR 501 B 1 HETATM 8 C C4 TAR . . . E 3 -28.707 -2.328 25.782 1 119.91 ? C4 TAR 501 B 1 HETATM 9 O O4 TAR . . . E 3 -28.145 -1.533 24.973 1 112.62 ? O4 TAR 501 B 1 HETATM 10 O O41 TAR . . . E 3 -29.483 -3.231 25.342 1 114.15 ? O41 TAR 501 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #