data_3TSM # _model_server_result.job_id -TyVHhHLVT-jomk3QSjeLg _model_server_result.datetime_utc '2024-11-26 07:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tsm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":271}' # _entry.id 3TSM # _exptl.entry_id 3TSM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TSM _cell.length_a 71.8 _cell.length_b 73.29 _cell.length_c 118.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TSM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3TSM _atom_sites.fract_transf_matrix[1][1] 0.013928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 271 271 GOL GOL . D 2 GOL B 1 271 271 GOL GOL . E 3 SO4 B 1 269 1 SO4 SO4 . F 4 UNL B 1 270 1 UNL UNL . G 2 GOL B 1 276 1 GOL GOL . H 5 HOH A 1 269 2 HOH HOH . H 5 HOH A 2 270 3 HOH HOH . H 5 HOH A 3 272 4 HOH HOH . H 5 HOH A 4 273 5 HOH HOH . H 5 HOH A 5 274 6 HOH HOH . H 5 HOH A 6 275 7 HOH HOH . H 5 HOH A 7 276 12 HOH HOH . H 5 HOH A 8 277 13 HOH HOH . H 5 HOH A 9 278 15 HOH HOH . H 5 HOH A 10 279 16 HOH HOH . H 5 HOH A 11 280 18 HOH HOH . H 5 HOH A 12 281 21 HOH HOH . H 5 HOH A 13 282 22 HOH HOH . H 5 HOH A 14 283 24 HOH HOH . H 5 HOH A 15 284 25 HOH HOH . H 5 HOH A 16 285 27 HOH HOH . H 5 HOH A 17 286 28 HOH HOH . H 5 HOH A 18 287 31 HOH HOH . H 5 HOH A 19 288 32 HOH HOH . H 5 HOH A 20 289 37 HOH HOH . H 5 HOH A 21 290 40 HOH HOH . H 5 HOH A 22 291 43 HOH HOH . H 5 HOH A 23 292 44 HOH HOH . H 5 HOH A 24 293 47 HOH HOH . H 5 HOH A 25 294 48 HOH HOH . H 5 HOH A 26 295 49 HOH HOH . H 5 HOH A 27 296 50 HOH HOH . H 5 HOH A 28 297 52 HOH HOH . H 5 HOH A 29 298 54 HOH HOH . H 5 HOH A 30 299 56 HOH HOH . H 5 HOH A 31 300 57 HOH HOH . H 5 HOH A 32 301 58 HOH HOH . H 5 HOH A 33 302 59 HOH HOH . H 5 HOH A 34 303 60 HOH HOH . H 5 HOH A 35 304 61 HOH HOH . H 5 HOH A 36 305 74 HOH HOH . H 5 HOH A 37 306 78 HOH HOH . H 5 HOH A 38 307 79 HOH HOH . H 5 HOH A 39 308 83 HOH HOH . H 5 HOH A 40 309 84 HOH HOH . H 5 HOH A 41 310 85 HOH HOH . H 5 HOH A 42 311 91 HOH HOH . H 5 HOH A 43 312 94 HOH HOH . H 5 HOH A 44 313 96 HOH HOH . H 5 HOH A 45 314 98 HOH HOH . H 5 HOH A 46 315 101 HOH HOH . H 5 HOH A 47 316 103 HOH HOH . H 5 HOH A 48 317 104 HOH HOH . H 5 HOH A 49 318 107 HOH HOH . H 5 HOH A 50 319 109 HOH HOH . H 5 HOH A 51 320 111 HOH HOH . H 5 HOH A 52 321 113 HOH HOH . H 5 HOH A 53 322 114 HOH HOH . H 5 HOH A 54 323 118 HOH HOH . H 5 HOH A 55 324 119 HOH HOH . H 5 HOH A 56 325 120 HOH HOH . H 5 HOH A 57 326 122 HOH HOH . H 5 HOH A 58 327 124 HOH HOH . H 5 HOH A 59 328 129 HOH HOH . H 5 HOH A 60 329 131 HOH HOH . H 5 HOH A 61 330 134 HOH HOH . H 5 HOH A 62 331 136 HOH HOH . H 5 HOH A 63 332 137 HOH HOH . H 5 HOH A 64 333 139 HOH HOH . H 5 HOH A 65 334 142 HOH HOH . H 5 HOH A 66 335 147 HOH HOH . H 5 HOH A 67 336 150 HOH HOH . H 5 HOH A 68 337 151 HOH HOH . H 5 HOH A 69 338 152 HOH HOH . H 5 HOH A 70 339 153 HOH HOH . H 5 HOH A 71 340 154 HOH HOH . H 5 HOH A 72 341 160 HOH HOH . H 5 HOH A 73 342 161 HOH HOH . H 5 HOH A 74 343 177 HOH HOH . H 5 HOH A 75 344 178 HOH HOH . H 5 HOH A 76 345 179 HOH HOH . H 5 HOH A 77 346 180 HOH HOH . H 5 HOH A 78 347 181 HOH HOH . H 5 HOH A 79 348 182 HOH HOH . H 5 HOH A 80 349 183 HOH HOH . H 5 HOH A 81 350 184 HOH HOH . H 5 HOH A 82 351 185 HOH HOH . H 5 HOH A 83 352 186 HOH HOH . H 5 HOH A 84 353 189 HOH HOH . H 5 HOH A 85 354 192 HOH HOH . H 5 HOH A 86 355 193 HOH HOH . H 5 HOH A 87 356 194 HOH HOH . H 5 HOH A 88 357 195 HOH HOH . H 5 HOH A 89 358 196 HOH HOH . H 5 HOH A 90 359 197 HOH HOH . H 5 HOH A 91 360 198 HOH HOH . H 5 HOH A 92 361 199 HOH HOH . H 5 HOH A 93 362 200 HOH HOH . H 5 HOH A 94 363 201 HOH HOH . H 5 HOH A 95 364 202 HOH HOH . H 5 HOH A 96 365 203 HOH HOH . H 5 HOH A 97 366 204 HOH HOH . H 5 HOH A 98 367 205 HOH HOH . H 5 HOH A 99 368 206 HOH HOH . H 5 HOH A 100 369 207 HOH HOH . H 5 HOH A 101 370 208 HOH HOH . H 5 HOH A 102 371 209 HOH HOH . H 5 HOH A 103 372 210 HOH HOH . H 5 HOH A 104 373 212 HOH HOH . H 5 HOH A 105 374 213 HOH HOH . H 5 HOH A 106 375 214 HOH HOH . H 5 HOH A 107 376 215 HOH HOH . H 5 HOH A 108 377 216 HOH HOH . H 5 HOH A 109 378 217 HOH HOH . H 5 HOH A 110 379 218 HOH HOH . H 5 HOH A 111 380 219 HOH HOH . H 5 HOH A 112 381 220 HOH HOH . H 5 HOH A 113 382 227 HOH HOH . H 5 HOH A 114 383 228 HOH HOH . H 5 HOH A 115 384 229 HOH HOH . H 5 HOH A 116 385 255 HOH HOH . H 5 HOH A 117 386 256 HOH HOH . H 5 HOH A 118 387 257 HOH HOH . I 5 HOH B 1 277 8 HOH HOH . I 5 HOH B 2 278 10 HOH HOH . I 5 HOH B 3 279 11 HOH HOH . I 5 HOH B 4 280 14 HOH HOH . I 5 HOH B 5 281 17 HOH HOH . I 5 HOH B 6 282 19 HOH HOH . I 5 HOH B 7 283 20 HOH HOH . I 5 HOH B 8 284 23 HOH HOH . I 5 HOH B 9 285 26 HOH HOH . I 5 HOH B 10 286 30 HOH HOH . I 5 HOH B 11 287 33 HOH HOH . I 5 HOH B 12 288 34 HOH HOH . I 5 HOH B 13 289 35 HOH HOH . I 5 HOH B 14 290 36 HOH HOH . I 5 HOH B 15 291 38 HOH HOH . I 5 HOH B 16 292 39 HOH HOH . I 5 HOH B 17 293 41 HOH HOH . I 5 HOH B 18 294 42 HOH HOH . I 5 HOH B 19 295 45 HOH HOH . I 5 HOH B 20 296 46 HOH HOH . I 5 HOH B 21 297 51 HOH HOH . I 5 HOH B 22 298 55 HOH HOH . I 5 HOH B 23 299 62 HOH HOH . I 5 HOH B 24 300 63 HOH HOH . I 5 HOH B 25 301 64 HOH HOH . I 5 HOH B 26 302 65 HOH HOH . I 5 HOH B 27 303 66 HOH HOH . I 5 HOH B 28 304 67 HOH HOH . I 5 HOH B 29 305 68 HOH HOH . I 5 HOH B 30 306 69 HOH HOH . I 5 HOH B 31 307 70 HOH HOH . I 5 HOH B 32 308 71 HOH HOH . I 5 HOH B 33 309 72 HOH HOH . I 5 HOH B 34 310 76 HOH HOH . I 5 HOH B 35 311 77 HOH HOH . I 5 HOH B 36 312 80 HOH HOH . I 5 HOH B 37 313 81 HOH HOH . I 5 HOH B 38 314 86 HOH HOH . I 5 HOH B 39 315 87 HOH HOH . I 5 HOH B 40 316 88 HOH HOH . I 5 HOH B 41 317 89 HOH HOH . I 5 HOH B 42 318 90 HOH HOH . I 5 HOH B 43 319 92 HOH HOH . I 5 HOH B 44 320 93 HOH HOH . I 5 HOH B 45 321 95 HOH HOH . I 5 HOH B 46 322 97 HOH HOH . I 5 HOH B 47 323 99 HOH HOH . I 5 HOH B 48 324 100 HOH HOH . I 5 HOH B 49 325 102 HOH HOH . I 5 HOH B 50 326 105 HOH HOH . I 5 HOH B 51 327 106 HOH HOH . I 5 HOH B 52 328 108 HOH HOH . I 5 HOH B 53 329 110 HOH HOH . I 5 HOH B 54 330 112 HOH HOH . I 5 HOH B 55 331 115 HOH HOH . I 5 HOH B 56 332 116 HOH HOH . I 5 HOH B 57 333 117 HOH HOH . I 5 HOH B 58 334 121 HOH HOH . I 5 HOH B 59 335 123 HOH HOH . I 5 HOH B 60 336 125 HOH HOH . I 5 HOH B 61 337 126 HOH HOH . I 5 HOH B 62 338 127 HOH HOH . I 5 HOH B 63 339 128 HOH HOH . I 5 HOH B 64 340 130 HOH HOH . I 5 HOH B 65 341 132 HOH HOH . I 5 HOH B 66 342 133 HOH HOH . I 5 HOH B 67 343 135 HOH HOH . I 5 HOH B 68 344 138 HOH HOH . I 5 HOH B 69 345 140 HOH HOH . I 5 HOH B 70 346 141 HOH HOH . I 5 HOH B 71 347 143 HOH HOH . I 5 HOH B 72 348 144 HOH HOH . I 5 HOH B 73 349 145 HOH HOH . I 5 HOH B 74 350 146 HOH HOH . I 5 HOH B 75 351 148 HOH HOH . I 5 HOH B 76 352 149 HOH HOH . I 5 HOH B 77 353 155 HOH HOH . I 5 HOH B 78 354 156 HOH HOH . I 5 HOH B 79 355 157 HOH HOH . I 5 HOH B 80 356 158 HOH HOH . I 5 HOH B 81 357 162 HOH HOH . I 5 HOH B 82 358 163 HOH HOH . I 5 HOH B 83 359 164 HOH HOH . I 5 HOH B 84 360 166 HOH HOH . I 5 HOH B 85 361 167 HOH HOH . I 5 HOH B 86 362 168 HOH HOH . I 5 HOH B 87 363 169 HOH HOH . I 5 HOH B 88 364 170 HOH HOH . I 5 HOH B 89 365 171 HOH HOH . I 5 HOH B 90 366 172 HOH HOH . I 5 HOH B 91 367 173 HOH HOH . I 5 HOH B 92 368 174 HOH HOH . I 5 HOH B 93 369 175 HOH HOH . I 5 HOH B 94 370 176 HOH HOH . I 5 HOH B 95 371 187 HOH HOH . I 5 HOH B 96 372 188 HOH HOH . I 5 HOH B 97 373 190 HOH HOH . I 5 HOH B 98 374 191 HOH HOH . I 5 HOH B 99 375 221 HOH HOH . I 5 HOH B 100 376 222 HOH HOH . I 5 HOH B 101 377 223 HOH HOH . I 5 HOH B 102 378 224 HOH HOH . I 5 HOH B 103 379 225 HOH HOH . I 5 HOH B 104 380 226 HOH HOH . I 5 HOH B 105 381 230 HOH HOH . I 5 HOH B 106 382 231 HOH HOH . I 5 HOH B 107 383 232 HOH HOH . I 5 HOH B 108 384 233 HOH HOH . I 5 HOH B 109 385 234 HOH HOH . I 5 HOH B 110 386 235 HOH HOH . I 5 HOH B 111 387 236 HOH HOH . I 5 HOH B 112 388 237 HOH HOH . I 5 HOH B 113 389 238 HOH HOH . I 5 HOH B 114 390 239 HOH HOH . I 5 HOH B 115 391 240 HOH HOH . I 5 HOH B 116 392 241 HOH HOH . I 5 HOH B 117 393 242 HOH HOH . I 5 HOH B 118 394 244 HOH HOH . I 5 HOH B 119 395 245 HOH HOH . I 5 HOH B 120 396 246 HOH HOH . I 5 HOH B 121 397 247 HOH HOH . I 5 HOH B 122 398 248 HOH HOH . I 5 HOH B 123 399 249 HOH HOH . I 5 HOH B 124 400 250 HOH HOH . I 5 HOH B 125 401 251 HOH HOH . I 5 HOH B 126 402 252 HOH HOH . I 5 HOH B 127 403 253 HOH HOH . I 5 HOH B 128 404 254 HOH HOH . I 5 HOH B 129 405 258 HOH HOH . I 5 HOH B 130 406 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -5.57 3.051 11.049 1 25.04 ? C1 GOL 271 A 1 HETATM 2 O O1 GOL . . . C 2 -4.522 2.056 11.026 1 23.69 ? O1 GOL 271 A 1 HETATM 3 C C2 GOL . . . C 2 -5.086 4.478 11.386 1 25.43 ? C2 GOL 271 A 1 HETATM 4 O O2 GOL . . . C 2 -4.371 4.566 12.618 1 24 ? O2 GOL 271 A 1 HETATM 5 C C3 GOL . . . C 2 -4.205 5.049 10.303 1 26.81 ? C3 GOL 271 A 1 HETATM 6 O O3 GOL . . . C 2 -3.798 6.409 10.638 1 27.12 ? O3 GOL 271 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #