data_3TT1
#
_model_server_result.job_id            rYzJMfuDc0y23T9QpMrQ8w 
_model_server_result.datetime_utc      '2024-11-21 19:03:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tt1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":520}' 
#
_entry.id    3TT1 
#
_exptl.entry_id    3TT1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.434 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TT1 
_cell.length_a            102.859 
_cell.length_b            162.761 
_cell.length_c            210.081 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TT1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K,P 1 1 
B,C,D,L,M,N,O,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 N N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 23 L CYS 23 1_555 C SG CYS 92 L CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 C SG CYS 138 L CYS 138 1_555 C SG CYS 198 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 D SG CYS 148 H CYS 148 1_555 D SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 E SG CYS 23 M CYS 23 1_555 E SG CYS 92 M CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 E SG CYS 138 M CYS 138 1_555 E SG CYS 198 M CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 F SG CYS 22 I CYS 22 1_555 F SG CYS 96 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 F SG CYS 148 I CYS 148 1_555 F SG CYS 203 I CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A O GLY 20 A GLY 20 1_555 H NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc2 A O ALA 22 A ALA 22 1_555 G NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc3 A O VAL 23 A VAL 23 1_555 H NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 G NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc5 A O THR 254 A THR 254 1_555 G NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 G NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 G NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc8 A O ALA 351 A ALA 351 1_555 H NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 H NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc10 A OG SER 355 A SER 355 1_555 H NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc11 B O GLY 20 B GLY 20 1_555 M NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc12 B O ALA 22 B ALA 22 1_555 L NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc13 B O VAL 23 B VAL 23 1_555 M NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc14 B OD1 ASN 27 B ASN 27 1_555 L NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc15 B O THR 254 B THR 254 1_555 L NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc16 B OG1 THR 254 B THR 254 1_555 L NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc17 B OD1 ASN 286 B ASN 286 1_555 L NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc18 B O ALA 351 B ALA 351 1_555 M NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc19 B OG1 THR 354 B THR 354 1_555 M NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc20 B OG SER 355 B SER 355 1_555 M NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
#
_chem_comp.formula           'C14 H28 O5 S' 
_chem_comp.formula_weight    308.434 
_chem_comp.id                SOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'octyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SOG sing 290 n n 
C1 S1 SOG sing 291 n n 
C1 O5 SOG sing 292 n n 
C1 H1 SOG sing 293 n n 
C2 C3 SOG sing 294 n n 
C2 O2 SOG sing 295 n n 
C2 H2 SOG sing 296 n n 
C3 C4 SOG sing 297 n n 
C3 O3 SOG sing 298 n n 
C3 H3 SOG sing 299 n n 
C4 C5 SOG sing 300 n n 
C4 O4 SOG sing 301 n n 
C4 H4 SOG sing 302 n n 
C5 C6 SOG sing 303 n n 
C5 O5 SOG sing 304 n n 
C5 H5 SOG sing 305 n n 
C6 O6 SOG sing 306 n n 
C6 H61 SOG sing 307 n n 
C6 H62 SOG sing 308 n n 
C1' C2' SOG sing 309 n n 
C1' S1 SOG sing 310 n n 
C1' "H1'1" SOG sing 311 n n 
C1' "H1'2" SOG sing 312 n n 
C2' C3' SOG sing 313 n n 
C2' "H2'1" SOG sing 314 n n 
C2' "H2'2" SOG sing 315 n n 
C3' C4' SOG sing 316 n n 
C3' "H3'1" SOG sing 317 n n 
C3' "H3'2" SOG sing 318 n n 
C4' C5' SOG sing 319 n n 
C4' "H4'1" SOG sing 320 n n 
C4' "H4'2" SOG sing 321 n n 
C5' C6' SOG sing 322 n n 
C5' "H5'1" SOG sing 323 n n 
C5' "H5'2" SOG sing 324 n n 
C6' C7' SOG sing 325 n n 
C6' "H6'1" SOG sing 326 n n 
C6' "H6'2" SOG sing 327 n n 
C7' C8' SOG sing 328 n n 
C7' "H7'1" SOG sing 329 n n 
C7' "H7'2" SOG sing 330 n n 
C8' "H8'1" SOG sing 331 n n 
C8' "H8'2" SOG sing 332 n n 
C8' "H8'3" SOG sing 333 n n 
O2 HO2 SOG sing 334 n n 
O3 HO3 SOG sing 335 n n 
O4 HO4 SOG sing 336 n n 
O6 HO6 SOG sing 337 n n 
#
_atom_sites.entry_id                     3TT1 
_atom_sites.fract_transf_matrix[1][1]    0.009722 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006144 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00476 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NA A 1 601 601 NA NA . 
H 4 NA A 1 602 602 NA NA . 
I 5 SOG A 1 520 1 SOG SOG . 
J 5 SOG A 1 521 3 SOG SOG . 
K 5 SOG A 1 522 4 SOG SOG . 
L 4 NA B 1 601 601 NA NA . 
M 4 NA B 1 602 602 NA NA . 
N 5 SOG B 1 520 2 SOG SOG . 
O 5 SOG B 1 521 5 SOG SOG . 
P 6 HOH A 1 603 603 HOH HOH . 
P 6 HOH A 2 604 604 HOH HOH . 
P 6 HOH A 3 605 605 HOH HOH . 
P 6 HOH A 4 606 606 HOH HOH . 
P 6 HOH A 5 607 607 HOH HOH . 
P 6 HOH A 6 608 608 HOH HOH . 
P 6 HOH A 7 609 609 HOH HOH . 
P 6 HOH A 8 612 612 HOH HOH . 
P 6 HOH A 9 613 613 HOH HOH . 
P 6 HOH A 10 617 617 HOH HOH . 
P 6 HOH A 11 618 618 HOH HOH . 
P 6 HOH A 12 621 621 HOH HOH . 
P 6 HOH A 13 622 622 HOH HOH . 
P 6 HOH A 14 623 623 HOH HOH . 
P 6 HOH A 15 624 624 HOH HOH . 
P 6 HOH A 16 625 625 HOH HOH . 
P 6 HOH A 17 628 628 HOH HOH . 
Q 6 HOH B 1 620 620 HOH HOH . 
Q 6 HOH B 2 629 629 HOH HOH . 
Q 6 HOH B 3 630 630 HOH HOH . 
Q 6 HOH B 4 633 633 HOH HOH . 
Q 6 HOH B 5 634 634 HOH HOH . 
Q 6 HOH B 6 635 635 HOH HOH . 
Q 6 HOH B 7 636 636 HOH HOH . 
Q 6 HOH B 8 637 637 HOH HOH . 
Q 6 HOH B 9 638 638 HOH HOH . 
Q 6 HOH B 10 639 639 HOH HOH . 
R 6 HOH H 1 631 631 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SOG . . . N 5 -76.351 51.519 -13.548 1 121.39 ? C1 SOG 520 B 1 
HETATM 2 C C2 SOG . . . N 5 -77.583 52.481 -13.404 1 113.74 ? C2 SOG 520 B 1 
HETATM 3 C C3 SOG . . . N 5 -78.805 52.326 -12.076 1 142.97 ? C3 SOG 520 B 1 
HETATM 4 C C4 SOG . . . N 5 -77.889 51.714 -11.026 1 125.48 ? C4 SOG 520 B 1 
HETATM 5 C C5 SOG . . . N 5 -77.417 50.372 -11.59 1 129.03 ? C5 SOG 520 B 1 
HETATM 6 C C6 SOG . . . N 5 -78.452 49.204 -11.347 1 96.31 ? C6 SOG 520 B 1 
HETATM 7 C C1' SOG . . . N 5 -76.179 49.218 -15.154 1 78.79 ? C1' SOG 520 B 1 
HETATM 8 C C2' SOG . . . N 5 -75.771 48.296 -14.013 1 87.33 ? C2' SOG 520 B 1 
HETATM 9 C C3' SOG . . . N 5 -74.751 47.304 -14.57 1 80.72 ? C3' SOG 520 B 1 
HETATM 10 C C4' SOG . . . N 5 -75.368 46.446 -15.653 1 77.31 ? C4' SOG 520 B 1 
HETATM 11 C C5' SOG . . . N 5 -75.253 44.945 -15.356 1 82.99 ? C5' SOG 520 B 1 
HETATM 12 C C6' SOG . . . N 5 -74.543 44.655 -14.039 1 77.81 ? C6' SOG 520 B 1 
HETATM 13 C C7' SOG . . . N 5 -74.136 43.19 -14.002 1 73.39 ? C7' SOG 520 B 1 
HETATM 14 C C8' SOG . . . N 5 -73.144 42.883 -15.13 1 56.69 ? C8' SOG 520 B 1 
HETATM 15 S S1 SOG . . . N 5 -77.359 50.533 -14.649 1 122.02 ? S1 SOG 520 B 1 
HETATM 16 O O2 SOG . . . N 5 -76.788 53.323 -12.536 1 108.3 ? O2 SOG 520 B 1 
HETATM 17 O O3 SOG . . . N 5 -79.871 51.479 -12.44 1 154.92 ? O3 SOG 520 B 1 
HETATM 18 O O4 SOG . . . N 5 -76.85 52.545 -10.682 1 112.97 ? O4 SOG 520 B 1 
HETATM 19 O O5 SOG . . . N 5 -76.938 50.891 -12.664 1 131.29 ? O5 SOG 520 B 1 
HETATM 20 O O6 SOG . . . N 5 -79.779 49.366 -11.894 1 106.49 ? O6 SOG 520 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    148 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#