data_3TT1 # _model_server_result.job_id 8kFnEtCkjSBugwimvLr7uQ _model_server_result.datetime_utc '2024-11-21 18:26:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tt1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":521}' # _entry.id 3TT1 # _exptl.entry_id 3TT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.434 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl 1-thio-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TT1 _cell.length_a 102.859 _cell.length_b 162.761 _cell.length_c 210.081 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,P 1 1 B,C,D,L,M,N,O,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 N N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 23 L CYS 23 1_555 C SG CYS 92 L CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 C SG CYS 138 L CYS 138 1_555 C SG CYS 198 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 148 H CYS 148 1_555 D SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 E SG CYS 23 M CYS 23 1_555 E SG CYS 92 M CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 E SG CYS 138 M CYS 138 1_555 E SG CYS 198 M CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 F SG CYS 22 I CYS 22 1_555 F SG CYS 96 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 F SG CYS 148 I CYS 148 1_555 F SG CYS 203 I CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A O GLY 20 A GLY 20 1_555 H NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 G NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 H NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 G NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 G NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 G NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 G NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 H NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 H NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 H NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc11 B O GLY 20 B GLY 20 1_555 M NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc12 B O ALA 22 B ALA 22 1_555 L NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc13 B O VAL 23 B VAL 23 1_555 M NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc14 B OD1 ASN 27 B ASN 27 1_555 L NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc15 B O THR 254 B THR 254 1_555 L NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc16 B OG1 THR 254 B THR 254 1_555 L NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc17 B OD1 ASN 286 B ASN 286 1_555 L NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc18 B O ALA 351 B ALA 351 1_555 M NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc19 B OG1 THR 354 B THR 354 1_555 M NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc20 B OG SER 355 B SER 355 1_555 M NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? # _chem_comp.formula 'C14 H28 O5 S' _chem_comp.formula_weight 308.434 _chem_comp.id SOG _chem_comp.mon_nstd_flag . _chem_comp.name 'octyl 1-thio-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SOG sing 290 n n C1 S1 SOG sing 291 n n C1 O5 SOG sing 292 n n C1 H1 SOG sing 293 n n C2 C3 SOG sing 294 n n C2 O2 SOG sing 295 n n C2 H2 SOG sing 296 n n C3 C4 SOG sing 297 n n C3 O3 SOG sing 298 n n C3 H3 SOG sing 299 n n C4 C5 SOG sing 300 n n C4 O4 SOG sing 301 n n C4 H4 SOG sing 302 n n C5 C6 SOG sing 303 n n C5 O5 SOG sing 304 n n C5 H5 SOG sing 305 n n C6 O6 SOG sing 306 n n C6 H61 SOG sing 307 n n C6 H62 SOG sing 308 n n C1' C2' SOG sing 309 n n C1' S1 SOG sing 310 n n C1' "H1'1" SOG sing 311 n n C1' "H1'2" SOG sing 312 n n C2' C3' SOG sing 313 n n C2' "H2'1" SOG sing 314 n n C2' "H2'2" SOG sing 315 n n C3' C4' SOG sing 316 n n C3' "H3'1" SOG sing 317 n n C3' "H3'2" SOG sing 318 n n C4' C5' SOG sing 319 n n C4' "H4'1" SOG sing 320 n n C4' "H4'2" SOG sing 321 n n C5' C6' SOG sing 322 n n C5' "H5'1" SOG sing 323 n n C5' "H5'2" SOG sing 324 n n C6' C7' SOG sing 325 n n C6' "H6'1" SOG sing 326 n n C6' "H6'2" SOG sing 327 n n C7' C8' SOG sing 328 n n C7' "H7'1" SOG sing 329 n n C7' "H7'2" SOG sing 330 n n C8' "H8'1" SOG sing 331 n n C8' "H8'2" SOG sing 332 n n C8' "H8'3" SOG sing 333 n n O2 HO2 SOG sing 334 n n O3 HO3 SOG sing 335 n n O4 HO4 SOG sing 336 n n O6 HO6 SOG sing 337 n n # _atom_sites.entry_id 3TT1 _atom_sites.fract_transf_matrix[1][1] 0.009722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NA A 1 601 601 NA NA . H 4 NA A 1 602 602 NA NA . I 5 SOG A 1 520 1 SOG SOG . J 5 SOG A 1 521 3 SOG SOG . K 5 SOG A 1 522 4 SOG SOG . L 4 NA B 1 601 601 NA NA . M 4 NA B 1 602 602 NA NA . N 5 SOG B 1 520 2 SOG SOG . O 5 SOG B 1 521 5 SOG SOG . P 6 HOH A 1 603 603 HOH HOH . P 6 HOH A 2 604 604 HOH HOH . P 6 HOH A 3 605 605 HOH HOH . P 6 HOH A 4 606 606 HOH HOH . P 6 HOH A 5 607 607 HOH HOH . P 6 HOH A 6 608 608 HOH HOH . P 6 HOH A 7 609 609 HOH HOH . P 6 HOH A 8 612 612 HOH HOH . P 6 HOH A 9 613 613 HOH HOH . P 6 HOH A 10 617 617 HOH HOH . P 6 HOH A 11 618 618 HOH HOH . P 6 HOH A 12 621 621 HOH HOH . P 6 HOH A 13 622 622 HOH HOH . P 6 HOH A 14 623 623 HOH HOH . P 6 HOH A 15 624 624 HOH HOH . P 6 HOH A 16 625 625 HOH HOH . P 6 HOH A 17 628 628 HOH HOH . Q 6 HOH B 1 620 620 HOH HOH . Q 6 HOH B 2 629 629 HOH HOH . Q 6 HOH B 3 630 630 HOH HOH . Q 6 HOH B 4 633 633 HOH HOH . Q 6 HOH B 5 634 634 HOH HOH . Q 6 HOH B 6 635 635 HOH HOH . Q 6 HOH B 7 636 636 HOH HOH . Q 6 HOH B 8 637 637 HOH HOH . Q 6 HOH B 9 638 638 HOH HOH . Q 6 HOH B 10 639 639 HOH HOH . R 6 HOH H 1 631 631 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' SOG . . . O 5 -81.999 52.535 -16.22 1 56.18 ? C1' SOG 521 B 1 HETATM 2 C C2' SOG . . . O 5 -81.51 51.827 -17.44 1 58.16 ? C2' SOG 521 B 1 HETATM 3 C C3' SOG . . . O 5 -81.459 50.336 -17.393 1 59.92 ? C3' SOG 521 B 1 HETATM 4 C C4' SOG . . . O 5 -81.143 49.707 -16.076 1 64.87 ? C4' SOG 521 B 1 HETATM 5 C C5' SOG . . . O 5 -81.379 48.241 -15.936 1 60.55 ? C5' SOG 521 B 1 HETATM 6 C C6' SOG . . . O 5 -81.165 47.618 -14.597 1 63.14 ? C6' SOG 521 B 1 HETATM 7 C C7' SOG . . . O 5 -79.911 46.84 -14.365 1 64.21 ? C7' SOG 521 B 1 HETATM 8 C C8' SOG . . . O 5 -80.025 45.515 -13.684 1 51.08 ? C8' SOG 521 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #