data_3TTM # _model_server_result.job_id IeLTneso9UIqNEkJwiR36Q _model_server_result.datetime_utc '2024-11-05 11:45:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ttm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":367}' # _entry.id 3TTM # _exptl.entry_id 3TTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIAMINOBUTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TTM _cell.length_a 65.909 _cell.length_b 82.862 _cell.length_c 128.287 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 153 A CYS 173 1_555 A SG CYS 216 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 B SG CYS 153 B CYS 173 1_555 B SG CYS 216 B CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C4 H12 N2' _chem_comp.formula_weight 88.151 _chem_comp.id PUT _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIAMINOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PUTRESCINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C4 PUT sing 277 n n N2 HN21 PUT sing 278 n n N2 HN22 PUT sing 279 n n C4 C3 PUT sing 280 n n C4 H41 PUT sing 281 n n C4 H42 PUT sing 282 n n C3 C2 PUT sing 283 n n C3 H31 PUT sing 284 n n C3 H32 PUT sing 285 n n C2 C1 PUT sing 286 n n C2 H21 PUT sing 287 n n C2 H22 PUT sing 288 n n C1 N1 PUT sing 289 n n C1 H11 PUT sing 290 n n C1 H12 PUT sing 291 n n N1 HN11 PUT sing 292 n n N1 HN12 PUT sing 293 n n # _atom_sites.entry_id 3TTM _atom_sites.fract_transf_matrix[1][1] 0.015172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PUT A 1 367 367 PUT PUT . D 2 PUT B 1 367 367 PUT PUT . E 3 HOH A 1 2 2 HOH HOH . E 3 HOH A 2 3 3 HOH HOH . E 3 HOH A 3 4 4 HOH HOH . E 3 HOH A 4 5 5 HOH HOH . E 3 HOH A 5 6 6 HOH HOH . E 3 HOH A 6 7 7 HOH HOH . E 3 HOH A 7 8 8 HOH HOH . E 3 HOH A 8 9 9 HOH HOH . E 3 HOH A 9 10 10 HOH HOH . E 3 HOH A 10 11 11 HOH HOH . E 3 HOH A 11 12 12 HOH HOH . E 3 HOH A 12 14 14 HOH HOH . E 3 HOH A 13 16 16 HOH HOH . E 3 HOH A 14 20 20 HOH HOH . E 3 HOH A 15 368 23 HOH HOH . E 3 HOH A 16 369 24 HOH HOH . E 3 HOH A 17 370 27 HOH HOH . E 3 HOH A 18 371 29 HOH HOH . E 3 HOH A 19 372 30 HOH HOH . E 3 HOH A 20 373 32 HOH HOH . E 3 HOH A 21 374 34 HOH HOH . E 3 HOH A 22 375 35 HOH HOH . E 3 HOH A 23 376 37 HOH HOH . E 3 HOH A 24 377 38 HOH HOH . E 3 HOH A 25 378 39 HOH HOH . E 3 HOH A 26 379 40 HOH HOH . E 3 HOH A 27 380 41 HOH HOH . E 3 HOH A 28 381 42 HOH HOH . E 3 HOH A 29 382 44 HOH HOH . E 3 HOH A 30 383 49 HOH HOH . E 3 HOH A 31 384 50 HOH HOH . E 3 HOH A 32 385 51 HOH HOH . E 3 HOH A 33 386 52 HOH HOH . E 3 HOH A 34 387 53 HOH HOH . E 3 HOH A 35 388 59 HOH HOH . E 3 HOH A 36 389 60 HOH HOH . E 3 HOH A 37 390 62 HOH HOH . E 3 HOH A 38 391 64 HOH HOH . E 3 HOH A 39 392 65 HOH HOH . E 3 HOH A 40 393 66 HOH HOH . E 3 HOH A 41 394 69 HOH HOH . E 3 HOH A 42 395 72 HOH HOH . E 3 HOH A 43 396 74 HOH HOH . E 3 HOH A 44 397 75 HOH HOH . E 3 HOH A 45 398 78 HOH HOH . E 3 HOH A 46 399 79 HOH HOH . E 3 HOH A 47 400 80 HOH HOH . E 3 HOH A 48 401 82 HOH HOH . E 3 HOH A 49 402 84 HOH HOH . E 3 HOH A 50 403 86 HOH HOH . E 3 HOH A 51 404 88 HOH HOH . E 3 HOH A 52 405 89 HOH HOH . E 3 HOH A 53 406 91 HOH HOH . E 3 HOH A 54 407 92 HOH HOH . E 3 HOH A 55 408 93 HOH HOH . E 3 HOH A 56 409 95 HOH HOH . E 3 HOH A 57 410 98 HOH HOH . E 3 HOH A 58 411 100 HOH HOH . E 3 HOH A 59 412 101 HOH HOH . E 3 HOH A 60 413 103 HOH HOH . E 3 HOH A 61 414 104 HOH HOH . E 3 HOH A 62 415 105 HOH HOH . E 3 HOH A 63 416 106 HOH HOH . E 3 HOH A 64 417 112 HOH HOH . E 3 HOH A 65 418 113 HOH HOH . E 3 HOH A 66 419 115 HOH HOH . E 3 HOH A 67 420 116 HOH HOH . E 3 HOH A 68 421 117 HOH HOH . E 3 HOH A 69 422 119 HOH HOH . E 3 HOH A 70 423 121 HOH HOH . E 3 HOH A 71 424 122 HOH HOH . E 3 HOH A 72 425 123 HOH HOH . E 3 HOH A 73 426 124 HOH HOH . E 3 HOH A 74 427 126 HOH HOH . E 3 HOH A 75 428 127 HOH HOH . E 3 HOH A 76 429 130 HOH HOH . E 3 HOH A 77 430 132 HOH HOH . E 3 HOH A 78 431 133 HOH HOH . E 3 HOH A 79 432 135 HOH HOH . E 3 HOH A 80 433 138 HOH HOH . E 3 HOH A 81 434 141 HOH HOH . E 3 HOH A 82 435 142 HOH HOH . E 3 HOH A 83 436 144 HOH HOH . E 3 HOH A 84 437 146 HOH HOH . E 3 HOH A 85 438 148 HOH HOH . E 3 HOH A 86 439 149 HOH HOH . E 3 HOH A 87 440 150 HOH HOH . E 3 HOH A 88 441 152 HOH HOH . E 3 HOH A 89 442 153 HOH HOH . E 3 HOH A 90 443 154 HOH HOH . E 3 HOH A 91 444 157 HOH HOH . E 3 HOH A 92 445 161 HOH HOH . E 3 HOH A 93 446 162 HOH HOH . E 3 HOH A 94 447 163 HOH HOH . E 3 HOH A 95 448 165 HOH HOH . E 3 HOH A 96 449 166 HOH HOH . E 3 HOH A 97 450 168 HOH HOH . E 3 HOH A 98 451 169 HOH HOH . E 3 HOH A 99 452 170 HOH HOH . E 3 HOH A 100 453 171 HOH HOH . E 3 HOH A 101 454 172 HOH HOH . E 3 HOH A 102 455 174 HOH HOH . E 3 HOH A 103 456 175 HOH HOH . E 3 HOH A 104 457 176 HOH HOH . E 3 HOH A 105 458 180 HOH HOH . E 3 HOH A 106 459 181 HOH HOH . E 3 HOH A 107 460 187 HOH HOH . E 3 HOH A 108 461 189 HOH HOH . E 3 HOH A 109 462 194 HOH HOH . E 3 HOH A 110 463 195 HOH HOH . E 3 HOH A 111 464 196 HOH HOH . E 3 HOH A 112 465 197 HOH HOH . E 3 HOH A 113 466 199 HOH HOH . E 3 HOH A 114 467 200 HOH HOH . E 3 HOH A 115 468 201 HOH HOH . E 3 HOH A 116 469 202 HOH HOH . E 3 HOH A 117 470 204 HOH HOH . E 3 HOH A 118 471 206 HOH HOH . E 3 HOH A 119 472 207 HOH HOH . E 3 HOH A 120 473 213 HOH HOH . E 3 HOH A 121 474 214 HOH HOH . E 3 HOH A 122 475 215 HOH HOH . E 3 HOH A 123 476 216 HOH HOH . E 3 HOH A 124 477 218 HOH HOH . E 3 HOH A 125 478 221 HOH HOH . E 3 HOH A 126 479 222 HOH HOH . E 3 HOH A 127 480 225 HOH HOH . E 3 HOH A 128 481 226 HOH HOH . E 3 HOH A 129 482 228 HOH HOH . E 3 HOH A 130 483 230 HOH HOH . E 3 HOH A 131 484 231 HOH HOH . E 3 HOH A 132 485 232 HOH HOH . E 3 HOH A 133 486 233 HOH HOH . E 3 HOH A 134 487 234 HOH HOH . E 3 HOH A 135 488 239 HOH HOH . E 3 HOH A 136 489 240 HOH HOH . E 3 HOH A 137 490 243 HOH HOH . E 3 HOH A 138 491 244 HOH HOH . E 3 HOH A 139 492 246 HOH HOH . E 3 HOH A 140 493 248 HOH HOH . E 3 HOH A 141 494 251 HOH HOH . E 3 HOH A 142 495 252 HOH HOH . E 3 HOH A 143 496 255 HOH HOH . E 3 HOH A 144 497 260 HOH HOH . E 3 HOH A 145 498 268 HOH HOH . E 3 HOH A 146 499 269 HOH HOH . E 3 HOH A 147 500 272 HOH HOH . E 3 HOH A 148 501 278 HOH HOH . E 3 HOH A 149 502 279 HOH HOH . E 3 HOH A 150 503 280 HOH HOH . F 3 HOH B 1 1 1 HOH HOH . F 3 HOH B 2 13 13 HOH HOH . F 3 HOH B 3 15 15 HOH HOH . F 3 HOH B 4 17 17 HOH HOH . F 3 HOH B 5 18 18 HOH HOH . F 3 HOH B 6 19 19 HOH HOH . F 3 HOH B 7 368 21 HOH HOH . F 3 HOH B 8 369 22 HOH HOH . F 3 HOH B 9 370 25 HOH HOH . F 3 HOH B 10 371 26 HOH HOH . F 3 HOH B 11 372 28 HOH HOH . F 3 HOH B 12 373 31 HOH HOH . F 3 HOH B 13 374 33 HOH HOH . F 3 HOH B 14 375 36 HOH HOH . F 3 HOH B 15 376 43 HOH HOH . F 3 HOH B 16 377 45 HOH HOH . F 3 HOH B 17 378 46 HOH HOH . F 3 HOH B 18 379 47 HOH HOH . F 3 HOH B 19 380 48 HOH HOH . F 3 HOH B 20 381 54 HOH HOH . F 3 HOH B 21 382 55 HOH HOH . F 3 HOH B 22 383 56 HOH HOH . F 3 HOH B 23 384 57 HOH HOH . F 3 HOH B 24 385 58 HOH HOH . F 3 HOH B 25 386 61 HOH HOH . F 3 HOH B 26 387 63 HOH HOH . F 3 HOH B 27 388 67 HOH HOH . F 3 HOH B 28 389 68 HOH HOH . F 3 HOH B 29 390 70 HOH HOH . F 3 HOH B 30 391 71 HOH HOH . F 3 HOH B 31 392 73 HOH HOH . F 3 HOH B 32 393 76 HOH HOH . F 3 HOH B 33 394 77 HOH HOH . F 3 HOH B 34 395 81 HOH HOH . F 3 HOH B 35 396 83 HOH HOH . F 3 HOH B 36 397 85 HOH HOH . F 3 HOH B 37 398 87 HOH HOH . F 3 HOH B 38 399 90 HOH HOH . F 3 HOH B 39 400 94 HOH HOH . F 3 HOH B 40 401 96 HOH HOH . F 3 HOH B 41 402 97 HOH HOH . F 3 HOH B 42 403 99 HOH HOH . F 3 HOH B 43 404 102 HOH HOH . F 3 HOH B 44 405 107 HOH HOH . F 3 HOH B 45 406 108 HOH HOH . F 3 HOH B 46 407 109 HOH HOH . F 3 HOH B 47 408 110 HOH HOH . F 3 HOH B 48 409 111 HOH HOH . F 3 HOH B 49 410 114 HOH HOH . F 3 HOH B 50 411 118 HOH HOH . F 3 HOH B 51 412 120 HOH HOH . F 3 HOH B 52 413 125 HOH HOH . F 3 HOH B 53 414 128 HOH HOH . F 3 HOH B 54 415 129 HOH HOH . F 3 HOH B 55 416 131 HOH HOH . F 3 HOH B 56 417 134 HOH HOH . F 3 HOH B 57 418 136 HOH HOH . F 3 HOH B 58 419 137 HOH HOH . F 3 HOH B 59 420 139 HOH HOH . F 3 HOH B 60 421 140 HOH HOH . F 3 HOH B 61 422 143 HOH HOH . F 3 HOH B 62 423 145 HOH HOH . F 3 HOH B 63 424 147 HOH HOH . F 3 HOH B 64 425 151 HOH HOH . F 3 HOH B 65 426 155 HOH HOH . F 3 HOH B 66 427 156 HOH HOH . F 3 HOH B 67 428 158 HOH HOH . F 3 HOH B 68 429 159 HOH HOH . F 3 HOH B 69 430 160 HOH HOH . F 3 HOH B 70 431 164 HOH HOH . F 3 HOH B 71 432 167 HOH HOH . F 3 HOH B 72 433 173 HOH HOH . F 3 HOH B 73 434 177 HOH HOH . F 3 HOH B 74 435 178 HOH HOH . F 3 HOH B 75 436 179 HOH HOH . F 3 HOH B 76 437 182 HOH HOH . F 3 HOH B 77 438 183 HOH HOH . F 3 HOH B 78 439 184 HOH HOH . F 3 HOH B 79 440 185 HOH HOH . F 3 HOH B 80 441 186 HOH HOH . F 3 HOH B 81 442 188 HOH HOH . F 3 HOH B 82 443 190 HOH HOH . F 3 HOH B 83 444 191 HOH HOH . F 3 HOH B 84 445 192 HOH HOH . F 3 HOH B 85 446 193 HOH HOH . F 3 HOH B 86 447 198 HOH HOH . F 3 HOH B 87 448 203 HOH HOH . F 3 HOH B 88 449 205 HOH HOH . F 3 HOH B 89 450 208 HOH HOH . F 3 HOH B 90 451 209 HOH HOH . F 3 HOH B 91 452 210 HOH HOH . F 3 HOH B 92 453 211 HOH HOH . F 3 HOH B 93 454 212 HOH HOH . F 3 HOH B 94 455 217 HOH HOH . F 3 HOH B 95 456 219 HOH HOH . F 3 HOH B 96 457 220 HOH HOH . F 3 HOH B 97 458 223 HOH HOH . F 3 HOH B 98 459 224 HOH HOH . F 3 HOH B 99 460 227 HOH HOH . F 3 HOH B 100 461 229 HOH HOH . F 3 HOH B 101 462 235 HOH HOH . F 3 HOH B 102 463 236 HOH HOH . F 3 HOH B 103 464 237 HOH HOH . F 3 HOH B 104 465 238 HOH HOH . F 3 HOH B 105 466 241 HOH HOH . F 3 HOH B 106 467 242 HOH HOH . F 3 HOH B 107 468 245 HOH HOH . F 3 HOH B 108 469 247 HOH HOH . F 3 HOH B 109 470 249 HOH HOH . F 3 HOH B 110 471 250 HOH HOH . F 3 HOH B 111 472 253 HOH HOH . F 3 HOH B 112 473 254 HOH HOH . F 3 HOH B 113 474 256 HOH HOH . F 3 HOH B 114 475 257 HOH HOH . F 3 HOH B 115 476 258 HOH HOH . F 3 HOH B 116 477 259 HOH HOH . F 3 HOH B 117 478 261 HOH HOH . F 3 HOH B 118 479 262 HOH HOH . F 3 HOH B 119 480 263 HOH HOH . F 3 HOH B 120 481 264 HOH HOH . F 3 HOH B 121 482 265 HOH HOH . F 3 HOH B 122 483 266 HOH HOH . F 3 HOH B 123 484 267 HOH HOH . F 3 HOH B 124 485 270 HOH HOH . F 3 HOH B 125 486 271 HOH HOH . F 3 HOH B 126 487 273 HOH HOH . F 3 HOH B 127 488 274 HOH HOH . F 3 HOH B 128 489 275 HOH HOH . F 3 HOH B 129 490 276 HOH HOH . F 3 HOH B 130 491 277 HOH HOH . F 3 HOH B 131 492 281 HOH HOH . F 3 HOH B 132 493 282 HOH HOH . F 3 HOH B 133 494 283 HOH HOH . F 3 HOH B 134 495 284 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 PUT . . . D 2 24.177 -5.931 0.839 1 12.43 ? N2 PUT 367 B 1 HETATM 2 C C4 PUT . . . D 2 25.206 -5.237 1.6 1 12.29 ? C4 PUT 367 B 1 HETATM 3 C C3 PUT . . . D 2 25.893 -6.193 2.584 1 10.01 ? C3 PUT 367 B 1 HETATM 4 C C2 PUT . . . D 2 27.387 -5.939 2.764 1 10.79 ? C2 PUT 367 B 1 HETATM 5 C C1 PUT . . . D 2 27.977 -6.805 3.901 1 11.51 ? C1 PUT 367 B 1 HETATM 6 N N1 PUT . . . D 2 29.439 -6.748 3.877 1 10.95 ? N1 PUT 367 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #