data_3TU7
#
_model_server_result.job_id            GzAmqML0-W9MY78bhdtjVw 
_model_server_result.datetime_utc      '2024-12-27 01:07:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tu7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    3TU7 
#
_exptl.entry_id    3TU7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              478.608 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(methylsulfonyl)-D-phenylalanyl-N-[(1-carbamimidoylpiperidin-4-yl)methyl]-L-prolinamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TU7 
_cell.length_a            164.219 
_cell.length_b            48.952 
_cell.length_c            43.631 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TU7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
covale ? covale1 C C GLU 9 I GLU 62 1_555 C N PTR 10 I PTR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 C C PTR 10 I PTR 63 1_555 C N LEU 11 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
#
_chem_comp.formula           'C22 H34 N6 O4 S' 
_chem_comp.formula_weight    478.608 
_chem_comp.id                0BM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(methylsulfonyl)-D-phenylalanyl-N-[(1-carbamimidoylpiperidin-4-yl)methyl]-L-prolinamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 0BM doub 1 n y 
C1 C6 0BM sing 2 n y 
C1 H1 0BM sing 3 n n 
C2 C3 0BM sing 4 n y 
C2 H2 0BM sing 5 n n 
C3 C4 0BM doub 6 n y 
C3 H3 0BM sing 7 n n 
C4 H4 0BM sing 8 n n 
C5 C4 0BM sing 9 n y 
C5 H5 0BM sing 10 n n 
C6 C5 0BM doub 11 n y 
C7 C6 0BM sing 12 n n 
C7 H17 0BM sing 13 n n 
C7 H27 0BM sing 14 n n 
C8 C7 0BM sing 15 n n 
C8 H8 0BM sing 16 n n 
N9 C8 0BM sing 17 n n 
N9 S10 0BM sing 18 n n 
N9 HN9 0BM sing 19 n n 
S10 O11 0BM doub 20 n n 
O12 S10 0BM doub 21 n n 
C13 S10 0BM sing 22 n n 
C13 H113 0BM sing 23 n n 
C13 H213 0BM sing 24 n n 
C13 H313 0BM sing 25 n n 
C15 N17 0BM sing 26 n n 
C15 C8 0BM sing 27 n n 
O16 C15 0BM doub 28 n n 
N17 C18 0BM sing 29 n n 
C18 H118 0BM sing 30 n n 
C18 H218 0BM sing 31 n n 
C19 C18 0BM sing 32 n n 
C19 H119 0BM sing 33 n n 
C19 H219 0BM sing 34 n n 
C20 C19 0BM sing 35 n n 
C20 H120 0BM sing 36 n n 
C20 H220 0BM sing 37 n n 
C21 C20 0BM sing 38 n n 
C21 N17 0BM sing 39 n n 
C21 H21 0BM sing 40 n n 
C22 C21 0BM sing 41 n n 
C22 O23 0BM doub 42 n n 
N24 C22 0BM sing 43 n n 
N24 HN24 0BM sing 44 n n 
C25 N24 0BM sing 45 n n 
C25 H125 0BM sing 46 n n 
C25 H225 0BM sing 47 n n 
C26 C25 0BM sing 48 n n 
C26 C31 0BM sing 49 n n 
C26 H26 0BM sing 50 n n 
C27 C26 0BM sing 51 n n 
C27 H127 0BM sing 52 n n 
C27 H227 0BM sing 53 n n 
C28 C27 0BM sing 54 n n 
C28 N29 0BM sing 55 n n 
C28 H128 0BM sing 56 n n 
C28 H228 0BM sing 57 n n 
N29 C30 0BM sing 58 n n 
C30 C31 0BM sing 59 n n 
C30 H130 0BM sing 60 n n 
C30 H230 0BM sing 61 n n 
C31 H131 0BM sing 62 n n 
C31 H231 0BM sing 63 n n 
C32 N29 0BM sing 64 n n 
C32 N33 0BM sing 65 n n 
N33 H133 0BM sing 66 n n 
N33 H233 0BM sing 67 n n 
N34 C32 0BM doub 68 n n 
N34 H134 0BM sing 69 n n 
#
_atom_sites.entry_id                     3TU7 
_atom_sites.fract_transf_matrix[1][1]    0.006089 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020428 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 0BM H 1 1 1 0BM LG1 . 
E 5 HOH L 1 19 9 HOH HOH . 
E 5 HOH L 2 26 26 HOH HOH . 
E 5 HOH L 3 39 39 HOH HOH . 
F 5 HOH H 1 2 2 HOH HOH . 
F 5 HOH H 2 3 3 HOH HOH . 
F 5 HOH H 3 4 4 HOH HOH . 
F 5 HOH H 4 5 5 HOH HOH . 
F 5 HOH H 5 6 6 HOH HOH . 
F 5 HOH H 6 7 7 HOH HOH . 
F 5 HOH H 7 8 8 HOH HOH . 
F 5 HOH H 8 10 10 HOH HOH . 
F 5 HOH H 9 11 11 HOH HOH . 
F 5 HOH H 10 12 12 HOH HOH . 
F 5 HOH H 11 13 13 HOH HOH . 
F 5 HOH H 12 14 14 HOH HOH . 
F 5 HOH H 13 15 15 HOH HOH . 
F 5 HOH H 14 248 1 HOH HOH . 
F 5 HOH H 15 249 16 HOH HOH . 
F 5 HOH H 16 250 17 HOH HOH . 
F 5 HOH H 17 251 18 HOH HOH . 
F 5 HOH H 18 252 19 HOH HOH . 
F 5 HOH H 19 253 20 HOH HOH . 
F 5 HOH H 20 254 21 HOH HOH . 
F 5 HOH H 21 255 22 HOH HOH . 
F 5 HOH H 22 256 23 HOH HOH . 
F 5 HOH H 23 257 24 HOH HOH . 
F 5 HOH H 24 258 25 HOH HOH . 
F 5 HOH H 25 259 27 HOH HOH . 
F 5 HOH H 26 260 28 HOH HOH . 
F 5 HOH H 27 261 29 HOH HOH . 
F 5 HOH H 28 262 30 HOH HOH . 
F 5 HOH H 29 263 31 HOH HOH . 
F 5 HOH H 30 264 32 HOH HOH . 
F 5 HOH H 31 265 33 HOH HOH . 
F 5 HOH H 32 266 34 HOH HOH . 
F 5 HOH H 33 267 35 HOH HOH . 
F 5 HOH H 34 268 36 HOH HOH . 
F 5 HOH H 35 269 37 HOH HOH . 
F 5 HOH H 36 270 38 HOH HOH . 
F 5 HOH H 37 271 40 HOH HOH . 
F 5 HOH H 38 272 41 HOH HOH . 
F 5 HOH H 39 273 42 HOH HOH . 
F 5 HOH H 40 274 43 HOH HOH . 
F 5 HOH H 41 275 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S10 0BM . . . D 4 25.188 6.825 23.57 1 21.71 ? S10 0BM 1 H 1 
HETATM 2 O O11 0BM . . . D 4 25.409 6.422 24.921 1 20.31 ? O11 0BM 1 H 1 
HETATM 3 O O12 0BM . . . D 4 24.825 8.18 23.298 1 22.97 ? O12 0BM 1 H 1 
HETATM 4 C C13 0BM . . . D 4 23.973 5.78 22.872 1 20.87 ? C13 0BM 1 H 1 
HETATM 5 N N9 0BM . . . D 4 26.611 6.578 22.799 1 18.21 ? N9 0BM 1 H 1 
HETATM 6 C C8 0BM . . . D 4 27.344 5.32 22.869 1 17.41 ? C8 0BM 1 H 1 
HETATM 7 C C15 0BM . . . D 4 26.948 4.506 21.628 1 19.11 ? C15 0BM 1 H 1 
HETATM 8 O O16 0BM . . . D 4 26.881 5.078 20.554 1 20.86 ? O16 0BM 1 H 1 
HETATM 9 C C7 0BM . . . D 4 28.843 5.65 22.874 1 15.58 ? C7 0BM 1 H 1 
HETATM 10 C C6 0BM . . . D 4 29.715 4.423 22.955 1 18.1 ? C6 0BM 1 H 1 
HETATM 11 C C1 0BM . . . D 4 30.478 4.019 21.863 1 16.75 ? C1 0BM 1 H 1 
HETATM 12 C C5 0BM . . . D 4 29.77 3.662 24.119 1 20.58 ? C5 0BM 1 H 1 
HETATM 13 C C2 0BM . . . D 4 31.269 2.882 21.931 1 18.17 ? C2 0BM 1 H 1 
HETATM 14 C C4 0BM . . . D 4 30.564 2.525 24.187 1 21.59 ? C4 0BM 1 H 1 
HETATM 15 C C3 0BM . . . D 4 31.313 2.135 23.095 1 21.79 ? C3 0BM 1 H 1 
HETATM 16 N N17 0BM . . . D 4 26.609 3.204 21.76 1 17.85 ? N17 0BM 1 H 1 
HETATM 17 C C21 0BM . . . D 4 26.212 2.404 20.594 1 17.16 ? C21 0BM 1 H 1 
HETATM 18 C C22 0BM . . . D 4 24.849 2.867 20.089 1 17.11 ? C22 0BM 1 H 1 
HETATM 19 O O23 0BM . . . D 4 24.005 3.295 20.875 1 22.42 ? O23 0BM 1 H 1 
HETATM 20 C C20 0BM . . . D 4 26.133 0.969 21.15 1 16.08 ? C20 0BM 1 H 1 
HETATM 21 C C19 0BM . . . D 4 26.806 1.014 22.499 1 17.23 ? C19 0BM 1 H 1 
HETATM 22 C C18 0BM . . . D 4 26.543 2.404 22.993 1 18.01 ? C18 0BM 1 H 1 
HETATM 23 N N24 0BM . . . D 4 24.643 2.81 18.779 1 13.71 ? N24 0BM 1 H 1 
HETATM 24 C C25 0BM . . . D 4 23.413 3.318 18.188 1 12.17 ? C25 0BM 1 H 1 
HETATM 25 C C26 0BM . . . D 4 23.426 4.701 17.55 1 12.91 ? C26 0BM 1 H 1 
HETATM 26 C C27 0BM . . . D 4 24.225 4.734 16.25 1 14.52 ? C27 0BM 1 H 1 
HETATM 27 C C28 0BM . . . D 4 24.07 6.075 15.515 1 14.99 ? C28 0BM 1 H 1 
HETATM 28 N N29 0BM . . . D 4 24.414 7.215 16.383 1 13.71 ? N29 0BM 1 H 1 
HETATM 29 C C30 0BM . . . D 4 23.699 7.231 17.677 1 11.78 ? C30 0BM 1 H 1 
HETATM 30 C C31 0BM . . . D 4 23.834 5.893 18.417 1 13.47 ? C31 0BM 1 H 1 
HETATM 31 C C32 0BM . . . D 4 24.886 8.42 15.747 1 12.58 ? C32 0BM 1 H 1 
HETATM 32 N N33 0BM . . . D 4 24.724 9.636 16.522 1 13.23 ? N33 0BM 1 H 1 
HETATM 33 N N34 0BM . . . D 4 25.437 8.536 14.579 1 10.76 ? N34 0BM 1 H 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#