data_3TUB # _model_server_result.job_id muq62sdXhBq0rEj6Do6TtA _model_server_result.datetime_utc '2024-12-22 02:03:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 3TUB # _exptl.entry_id 3TUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{5-[(6,7-dimethoxyquinolin-4-yl)oxy]pyridin-2-yl}-3-[(1R,2S)-2-phenylcyclopropyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TUB _cell.length_a 45.92 _cell.length_b 71.62 _cell.length_c 84.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H24 N4 O4' _chem_comp.formula_weight 456.493 _chem_comp.id FPU _chem_comp.mon_nstd_flag . _chem_comp.name 1-{5-[(6,7-dimethoxyquinolin-4-yl)oxy]pyridin-2-yl}-3-[(1R,2S)-2-phenylcyclopropyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 FPU sing 83 n n C1 H1 FPU sing 84 n n C1 H1A FPU sing 85 n n C1 H1B FPU sing 86 n n N1 C7 FPU doub 87 n y N1 C8 FPU sing 88 n y O1 C2 FPU sing 89 n n C2 C3 FPU doub 90 n y C2 C10 FPU sing 91 n y N2 C15 FPU doub 92 n y N2 C16 FPU sing 93 n y O2 C10 FPU sing 94 n n O2 C11 FPU sing 95 n n C3 C4 FPU sing 96 n y C3 H3 FPU sing 97 n n N3 C15 FPU sing 98 n n N3 C17 FPU sing 99 n n N3 HN3 FPU sing 100 n n O3 C5 FPU sing 101 n n O3 C12 FPU sing 102 n n C4 C5 FPU sing 103 n y C4 C8 FPU doub 104 n y N4 C17 FPU sing 105 n n N4 C18 FPU sing 106 n n N4 HN4 FPU sing 107 n n O4 C17 FPU doub 108 n n C5 C6 FPU doub 109 n y C6 C7 FPU sing 110 n y C6 H6 FPU sing 111 n n C7 H7 FPU sing 112 n n C8 C9 FPU sing 113 n y C9 C10 FPU doub 114 n y C9 H9 FPU sing 115 n n C11 H11 FPU sing 116 n n C11 H11A FPU sing 117 n n C11 H11B FPU sing 118 n n C12 C13 FPU sing 119 n y C12 C16 FPU doub 120 n y C13 C14 FPU doub 121 n y C13 H13 FPU sing 122 n n C14 C15 FPU sing 123 n y C14 H14 FPU sing 124 n n C16 H16 FPU sing 125 n n C18 C19 FPU sing 126 n n C18 C20 FPU sing 127 n n C18 H18 FPU sing 128 n n C19 C20 FPU sing 129 n n C19 H19 FPU sing 130 n n C19 H19A FPU sing 131 n n C20 C21 FPU sing 132 n n C20 H20 FPU sing 133 n n C21 C22 FPU doub 134 n y C21 C26 FPU sing 135 n y C22 C23 FPU sing 136 n y C22 H22 FPU sing 137 n n C23 C24 FPU doub 138 n y C23 H23 FPU sing 139 n n C24 C25 FPU sing 140 n y C24 H24 FPU sing 141 n n C25 C26 FPU doub 142 n y C25 H25 FPU sing 143 n n C26 H26 FPU sing 144 n n # _atom_sites.entry_id 3TUB _atom_sites.fract_transf_matrix[1][1] 0.021777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FPU A 1 999 999 FPU FPU . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 46 46 HOH HOH . C 3 HOH A 46 47 47 HOH HOH . C 3 HOH A 47 48 48 HOH HOH . C 3 HOH A 48 49 49 HOH HOH . C 3 HOH A 49 50 50 HOH HOH . C 3 HOH A 50 52 52 HOH HOH . C 3 HOH A 51 53 53 HOH HOH . C 3 HOH A 52 54 54 HOH HOH . C 3 HOH A 53 55 55 HOH HOH . C 3 HOH A 54 56 56 HOH HOH . C 3 HOH A 55 57 57 HOH HOH . C 3 HOH A 56 58 58 HOH HOH . C 3 HOH A 57 59 59 HOH HOH . C 3 HOH A 58 60 60 HOH HOH . C 3 HOH A 59 61 61 HOH HOH . C 3 HOH A 60 62 62 HOH HOH . C 3 HOH A 61 63 63 HOH HOH . C 3 HOH A 62 64 64 HOH HOH . C 3 HOH A 63 65 65 HOH HOH . C 3 HOH A 64 66 66 HOH HOH . C 3 HOH A 65 67 67 HOH HOH . C 3 HOH A 66 68 68 HOH HOH . C 3 HOH A 67 69 69 HOH HOH . C 3 HOH A 68 70 70 HOH HOH . C 3 HOH A 69 71 71 HOH HOH . C 3 HOH A 70 72 72 HOH HOH . C 3 HOH A 71 73 73 HOH HOH . C 3 HOH A 72 74 74 HOH HOH . C 3 HOH A 73 75 75 HOH HOH . C 3 HOH A 74 76 76 HOH HOH . C 3 HOH A 75 78 78 HOH HOH . C 3 HOH A 76 79 79 HOH HOH . C 3 HOH A 77 80 80 HOH HOH . C 3 HOH A 78 82 82 HOH HOH . C 3 HOH A 79 83 83 HOH HOH . C 3 HOH A 80 84 84 HOH HOH . C 3 HOH A 81 86 86 HOH HOH . C 3 HOH A 82 87 87 HOH HOH . C 3 HOH A 83 88 88 HOH HOH . C 3 HOH A 84 89 89 HOH HOH . C 3 HOH A 85 90 90 HOH HOH . C 3 HOH A 86 91 91 HOH HOH . C 3 HOH A 87 92 92 HOH HOH . C 3 HOH A 88 93 93 HOH HOH . C 3 HOH A 89 94 94 HOH HOH . C 3 HOH A 90 95 95 HOH HOH . C 3 HOH A 91 96 96 HOH HOH . C 3 HOH A 92 97 97 HOH HOH . C 3 HOH A 93 98 98 HOH HOH . C 3 HOH A 94 99 99 HOH HOH . C 3 HOH A 95 100 100 HOH HOH . C 3 HOH A 96 101 101 HOH HOH . C 3 HOH A 97 103 103 HOH HOH . C 3 HOH A 98 104 104 HOH HOH . C 3 HOH A 99 105 105 HOH HOH . C 3 HOH A 100 106 106 HOH HOH . C 3 HOH A 101 107 107 HOH HOH . C 3 HOH A 102 110 110 HOH HOH . C 3 HOH A 103 111 111 HOH HOH . C 3 HOH A 104 112 112 HOH HOH . C 3 HOH A 105 115 115 HOH HOH . C 3 HOH A 106 116 116 HOH HOH . C 3 HOH A 107 117 117 HOH HOH . C 3 HOH A 108 118 118 HOH HOH . C 3 HOH A 109 119 119 HOH HOH . C 3 HOH A 110 120 120 HOH HOH . C 3 HOH A 111 121 121 HOH HOH . C 3 HOH A 112 122 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FPU . . . B 2 18.139 -9.867 -6.541 1 45.17 ? C1 FPU 999 A 1 HETATM 2 N N1 FPU . . . B 2 19.866 -3.878 -4.963 1 42.42 ? N1 FPU 999 A 1 HETATM 3 O O1 FPU . . . B 2 17.599 -8.879 -5.702 1 53.19 ? O1 FPU 999 A 1 HETATM 4 C C2 FPU . . . B 2 18.273 -7.699 -5.612 1 51.29 ? C2 FPU 999 A 1 HETATM 5 N N2 FPU . . . B 2 23.341 -4.642 -10.196 1 47.39 ? N2 FPU 999 A 1 HETATM 6 O O2 FPU . . . B 2 16.359 -7.002 -4.305 1 51.98 ? O2 FPU 999 A 1 HETATM 7 C C3 FPU . . . B 2 19.461 -7.389 -6.223 1 49.48 ? C3 FPU 999 A 1 HETATM 8 N N3 FPU . . . B 2 25.389 -5.078 -11.35 1 38.73 ? N3 FPU 999 A 1 HETATM 9 O O3 FPU . . . B 2 21.789 -6.592 -7.485 1 44.17 ? O3 FPU 999 A 1 HETATM 10 C C4 FPU . . . B 2 20.02 -6.099 -6.027 1 43.5 ? C4 FPU 999 A 1 HETATM 11 N N4 FPU . . . B 2 26.384 -3.776 -13.043 1 48.05 ? N4 FPU 999 A 1 HETATM 12 O O4 FPU . . . B 2 24.177 -3.406 -12.459 1 45.91 ? O4 FPU 999 A 1 HETATM 13 C C5 FPU . . . B 2 21.214 -5.656 -6.672 1 41.8 ? C5 FPU 999 A 1 HETATM 14 C C6 FPU . . . B 2 21.715 -4.399 -6.449 1 41.67 ? C6 FPU 999 A 1 HETATM 15 C C7 FPU . . . B 2 20.976 -3.534 -5.596 1 37.51 ? C7 FPU 999 A 1 HETATM 16 C C8 FPU . . . B 2 19.392 -5.168 -5.178 1 43.73 ? C8 FPU 999 A 1 HETATM 17 C C9 FPU . . . B 2 18.172 -5.517 -4.535 1 45.29 ? C9 FPU 999 A 1 HETATM 18 C C10 FPU . . . B 2 17.618 -6.742 -4.778 1 49.31 ? C10 FPU 999 A 1 HETATM 19 C C11 FPU . . . B 2 16.354 -7.785 -3.138 1 55.73 ? C11 FPU 999 A 1 HETATM 20 C C12 FPU . . . B 2 22.693 -6.133 -8.41 1 43.48 ? C12 FPU 999 A 1 HETATM 21 C C13 FPU . . . B 2 23.822 -6.93 -8.598 1 41.05 ? C13 FPU 999 A 1 HETATM 22 C C14 FPU . . . B 2 24.714 -6.581 -9.595 1 36.96 ? C14 FPU 999 A 1 HETATM 23 C C15 FPU . . . B 2 24.447 -5.432 -10.374 1 39.62 ? C15 FPU 999 A 1 HETATM 24 C C16 FPU . . . B 2 22.476 -5.019 -9.232 1 46.45 ? C16 FPU 999 A 1 HETATM 25 C C17 FPU . . . B 2 25.222 -4.015 -12.283 1 43.83 ? C17 FPU 999 A 1 HETATM 26 C C18 FPU . . . B 2 26.284 -2.938 -14.205 1 52.19 ? C18 FPU 999 A 1 HETATM 27 C C19 FPU . . . B 2 27.493 -2.136 -14.649 1 52.69 ? C19 FPU 999 A 1 HETATM 28 C C20 FPU . . . B 2 26.3 -1.413 -14.052 1 54.31 ? C20 FPU 999 A 1 HETATM 29 C C21 FPU . . . B 2 25.336 -0.679 -14.886 1 53.91 ? C21 FPU 999 A 1 HETATM 30 C C22 FPU . . . B 2 25.446 -0.647 -16.273 1 53.85 ? C22 FPU 999 A 1 HETATM 31 C C23 FPU . . . B 2 24.47 -0.007 -17.028 1 51.74 ? C23 FPU 999 A 1 HETATM 32 C C24 FPU . . . B 2 23.389 0.6 -16.403 1 50.09 ? C24 FPU 999 A 1 HETATM 33 C C25 FPU . . . B 2 23.291 0.583 -15.016 1 50.84 ? C25 FPU 999 A 1 HETATM 34 C C26 FPU . . . B 2 24.259 -0.056 -14.256 1 52.52 ? C26 FPU 999 A 1 HETATM 35 H H18 FPU . . . B 2 25.619 -3.383 -14.972 0 52.24 ? H18 FPU 999 A 1 HETATM 36 H H20 FPU . . . B 2 26.429 -0.976 -13.046 0 54.32 ? H20 FPU 999 A 1 HETATM 37 H H1 FPU . . . B 2 19.125 -10.23 -6.207 0 45.04 ? H1 FPU 999 A 1 HETATM 38 H H1A FPU . . . B 2 18.209 -9.554 -7.596 0 45.04 ? H1A FPU 999 A 1 HETATM 39 H H1B FPU . . . B 2 17.413 -10.691 -6.464 0 45.04 ? H1B FPU 999 A 1 HETATM 40 H H3 FPU . . . B 2 19.984 -8.098 -6.868 0 49.47 ? H3 FPU 999 A 1 HETATM 41 H H6 FPU . . . B 2 22.651 -4.039 -6.881 0 41.74 ? H6 FPU 999 A 1 HETATM 42 H H7 FPU . . . B 2 21.318 -2.504 -5.434 0 37.51 ? H7 FPU 999 A 1 HETATM 43 H H9 FPU . . . B 2 17.686 -4.797 -3.869 0 45.26 ? H9 FPU 999 A 1 HETATM 44 H H11 FPU . . . B 2 16.774 -8.792 -3.284 0 55.67 ? H11 FPU 999 A 1 HETATM 45 H H11A FPU . . . B 2 15.287 -7.88 -2.886 0 55.67 ? H11A FPU 999 A 1 HETATM 46 H H11B FPU . . . B 2 16.879 -7.301 -2.297 0 55.67 ? H11B FPU 999 A 1 HETATM 47 H H13 FPU . . . B 2 23.998 -7.809 -7.971 0 41.06 ? H13 FPU 999 A 1 HETATM 48 H H14 FPU . . . B 2 25.595 -7.201 -9.766 0 37.04 ? H14 FPU 999 A 1 HETATM 49 H H16 FPU . . . B 2 21.587 -4.378 -9.146 0 46.45 ? H16 FPU 999 A 1 HETATM 50 H HN3 FPU . . . B 2 26.202 -5.685 -11.423 0 38.67 ? HN3 FPU 999 A 1 HETATM 51 H HN4 FPU . . . B 2 27.308 -3.962 -12.675 0 48.04 ? HN4 FPU 999 A 1 HETATM 52 H H19 FPU . . . B 2 28.434 -2.169 -14.09 0 52.75 ? H19 FPU 999 A 1 HETATM 53 H H19A FPU . . . B 2 27.724 -2.06 -15.717 0 52.75 ? H19A FPU 999 A 1 HETATM 54 H H22 FPU . . . B 2 26.293 -1.122 -16.777 0 53.9 ? H22 FPU 999 A 1 HETATM 55 H H23 FPU . . . B 2 24.542 0.004 -18.117 0 51.82 ? H23 FPU 999 A 1 HETATM 56 H H24 FPU . . . B 2 22.612 1.086 -16.998 0 50.1 ? H24 FPU 999 A 1 HETATM 57 H H25 FPU . . . B 2 22.441 1.065 -14.526 0 50.89 ? H25 FPU 999 A 1 HETATM 58 H H26 FPU . . . B 2 24.161 -0.086 -13.166 0 52.51 ? H26 FPU 999 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 58 #