data_3TUD # _model_server_result.job_id Q9wtoGrj318FFOnhW--5XA _model_server_result.datetime_utc '2024-12-22 01:47:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3TUD # _exptl.entry_id 3TUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.512 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-methyl-3-[8-methyl-7-oxo-2-(phenylamino)-7,8-dihydropyrido[2,3-d]pyrimidin-6-yl]phenyl}-3-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TUD _cell.length_a 46.799 _cell.length_b 68.066 _cell.length_c 82.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H22 F3 N5 O2' _chem_comp.formula_weight 529.512 _chem_comp.id FPX _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-methyl-3-[8-methyl-7-oxo-2-(phenylamino)-7,8-dihydropyrido[2,3-d]pyrimidin-6-yl]phenyl}-3-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FPX sing 83 n n C2 C3 FPX doub 84 n y C2 C20 FPX sing 85 n y C3 C4 FPX sing 86 n y C4 C5 FPX doub 87 n y C5 N6 FPX sing 88 n n C5 C19 FPX sing 89 n y N6 C7 FPX sing 90 n n C7 O8 FPX doub 91 n n C7 C9 FPX sing 92 n n C9 C10 FPX doub 93 n y C9 C14 FPX sing 94 n y C10 C11 FPX sing 95 n y C11 C12 FPX doub 96 n y C12 C13 FPX sing 97 n y C13 C14 FPX doub 98 n y C13 C15 FPX sing 99 n n C15 F16 FPX sing 100 n n C15 F17 FPX sing 101 n n C15 F18 FPX sing 102 n n C19 C20 FPX doub 103 n y C20 C21 FPX sing 104 n n C21 C22 FPX doub 105 n n C21 C38 FPX sing 106 n n C22 C23 FPX sing 107 n n C23 C24 FPX doub 108 n y C23 C35 FPX sing 109 n y C24 N25 FPX sing 110 n y N25 C26 FPX doub 111 n y C26 N27 FPX sing 112 n n C26 N34 FPX sing 113 n y N27 C28 FPX sing 114 n n C28 C29 FPX doub 115 n y C28 C33 FPX sing 116 n y C29 C30 FPX sing 117 n y C30 C31 FPX doub 118 n y C31 C32 FPX sing 119 n y C32 C33 FPX doub 120 n y N34 C35 FPX doub 121 n y C35 N36 FPX sing 122 n n N36 C37 FPX sing 123 n n N36 C38 FPX sing 124 n n C38 O39 FPX doub 125 n n C1 H1 FPX sing 126 n n C1 H1A FPX sing 127 n n C1 H1B FPX sing 128 n n C3 H3 FPX sing 129 n n C4 H4 FPX sing 130 n n N6 HN6 FPX sing 131 n n C10 H10 FPX sing 132 n n C11 H11 FPX sing 133 n n C12 H12 FPX sing 134 n n C14 H14 FPX sing 135 n n C19 H19 FPX sing 136 n n C22 H22 FPX sing 137 n n C24 H24 FPX sing 138 n n N27 HN27 FPX sing 139 n n C29 H29 FPX sing 140 n n C30 H30 FPX sing 141 n n C31 H31 FPX sing 142 n n C32 H32 FPX sing 143 n n C33 H33 FPX sing 144 n n C37 H37 FPX sing 145 n n C37 H37A FPX sing 146 n n C37 H37B FPX sing 147 n n # _atom_sites.entry_id 3TUD _atom_sites.fract_transf_matrix[1][1] 0.021368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FPX A 1 1 1 FPX FPX . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 46 46 HOH HOH . C 3 HOH A 46 47 47 HOH HOH . C 3 HOH A 47 48 48 HOH HOH . C 3 HOH A 48 49 49 HOH HOH . C 3 HOH A 49 50 50 HOH HOH . C 3 HOH A 50 51 51 HOH HOH . C 3 HOH A 51 642 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FPX . . . B 2 -25.662 -5.809 5.38 1 52.54 ? C1 FPX 1 A 1 HETATM 2 C C2 FPX . . . B 2 -25.662 -5.156 6.738 1 56.82 ? C2 FPX 1 A 1 HETATM 3 C C3 FPX . . . B 2 -26.873 -5.077 7.474 1 59.69 ? C3 FPX 1 A 1 HETATM 4 C C4 FPX . . . B 2 -26.902 -4.423 8.716 1 59.94 ? C4 FPX 1 A 1 HETATM 5 C C5 FPX . . . B 2 -25.727 -3.904 9.289 1 60.24 ? C5 FPX 1 A 1 HETATM 6 N N6 FPX . . . B 2 -25.876 -3.292 10.57 1 63 ? N6 FPX 1 A 1 HETATM 7 C C7 FPX . . . B 2 -25.139 -2.278 11.125 1 61.26 ? C7 FPX 1 A 1 HETATM 8 O O8 FPX . . . B 2 -24.187 -1.771 10.576 1 62.38 ? O8 FPX 1 A 1 HETATM 9 C C9 FPX . . . B 2 -25.49 -1.728 12.431 1 58.74 ? C9 FPX 1 A 1 HETATM 10 C C10 FPX . . . B 2 -26.576 -2.215 13.223 1 58.87 ? C10 FPX 1 A 1 HETATM 11 C C11 FPX . . . B 2 -26.846 -1.593 14.443 1 59.58 ? C11 FPX 1 A 1 HETATM 12 C C12 FPX . . . B 2 -26.026 -0.506 14.887 1 59.67 ? C12 FPX 1 A 1 HETATM 13 C C13 FPX . . . B 2 -24.967 -0.04 14.097 1 58.91 ? C13 FPX 1 A 1 HETATM 14 C C14 FPX . . . B 2 -24.705 -0.649 12.882 1 57.96 ? C14 FPX 1 A 1 HETATM 15 C C15 FPX . . . B 2 -24.137 1.127 14.515 1 59.11 ? C15 FPX 1 A 1 HETATM 16 F F16 FPX . . . B 2 -23.547 0.987 15.764 1 62.39 ? F16 FPX 1 A 1 HETATM 17 F F17 FPX . . . B 2 -23.223 1.507 13.552 1 59.4 ? F17 FPX 1 A 1 HETATM 18 F F18 FPX . . . B 2 -24.996 2.193 14.538 1 57.1 ? F18 FPX 1 A 1 HETATM 19 C C19 FPX . . . B 2 -24.521 -3.977 8.565 1 57.11 ? C19 FPX 1 A 1 HETATM 20 C C20 FPX . . . B 2 -24.468 -4.588 7.3 1 56.29 ? C20 FPX 1 A 1 HETATM 21 C C21 FPX . . . B 2 -23.152 -4.681 6.565 1 50.53 ? C21 FPX 1 A 1 HETATM 22 C C22 FPX . . . B 2 -22.597 -3.626 5.869 1 47.25 ? C22 FPX 1 A 1 HETATM 23 C C23 FPX . . . B 2 -21.302 -3.858 5.213 1 46.88 ? C23 FPX 1 A 1 HETATM 24 C C24 FPX . . . B 2 -20.608 -2.847 4.499 1 47.1 ? C24 FPX 1 A 1 HETATM 25 N N25 FPX . . . B 2 -19.426 -3.149 3.924 1 47.66 ? N25 FPX 1 A 1 HETATM 26 C C26 FPX . . . B 2 -18.891 -4.387 4.014 1 46.66 ? C26 FPX 1 A 1 HETATM 27 N N27 FPX . . . B 2 -17.663 -4.631 3.415 1 46.6 ? N27 FPX 1 A 1 HETATM 28 C C28 FPX . . . B 2 -16.904 -5.823 3.401 1 43.02 ? C28 FPX 1 A 1 HETATM 29 C C29 FPX . . . B 2 -17.09 -6.893 4.356 1 41.71 ? C29 FPX 1 A 1 HETATM 30 C C30 FPX . . . B 2 -16.222 -8.016 4.294 1 41.83 ? C30 FPX 1 A 1 HETATM 31 C C31 FPX . . . B 2 -15.178 -8.092 3.296 1 39.53 ? C31 FPX 1 A 1 HETATM 32 C C32 FPX . . . B 2 -15.01 -7.049 2.419 1 40.15 ? C32 FPX 1 A 1 HETATM 33 C C33 FPX . . . B 2 -15.902 -5.918 2.427 1 40.41 ? C33 FPX 1 A 1 HETATM 34 N N34 FPX . . . B 2 -19.528 -5.342 4.653 1 43.64 ? N34 FPX 1 A 1 HETATM 35 C C35 FPX . . . B 2 -20.686 -5.148 5.26 1 43 ? C35 FPX 1 A 1 HETATM 36 N N36 FPX . . . B 2 -21.274 -6.199 5.94 1 45.8 ? N36 FPX 1 A 1 HETATM 37 C C37 FPX . . . B 2 -20.615 -7.558 5.997 1 42.06 ? C37 FPX 1 A 1 HETATM 38 C C38 FPX . . . B 2 -22.463 -6.002 6.588 1 48.83 ? C38 FPX 1 A 1 HETATM 39 O O39 FPX . . . B 2 -22.959 -6.935 7.191 1 49.9 ? O39 FPX 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #