data_3TUY # _model_server_result.job_id njp_5GbEk4HwQZ_JNdKgng _model_server_result.datetime_utc '2024-10-18 16:27:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tuy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":157}' # _entry.id 3TUY # _exptl.entry_id 3TUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 77.2 _cell.angle_beta 85.99 _cell.angle_gamma 73.44 _cell.entry_id 3TUY _cell.length_a 50.946 _cell.length_b 69.232 _cell.length_c 79.503 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,K,L,M 1 1 D,E,F,I,J,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C SEP 11 E SEP 11 1_555 E N ASN 12 E ASN 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 B OD2 ASP 33 B ASP 33 1_555 G MG MG . B MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc2 B OD1 ASN 35 B ASN 35 1_555 G MG MG . B MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc3 B OD2 ASP 37 B ASP 37 1_555 G MG MG . B MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc4 B O PHE 39 B PHE 39 1_555 G MG MG . B MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 B OD2 ASP 44 B ASP 44 1_555 G MG MG . B MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 C OD1 ASP 19 C ASP 19 1_555 H CA CA . C CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc7 C O ASP 19 C ASP 19 1_555 H CA CA . C CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc8 C OD1 ASP 22 C ASP 22 1_555 H CA CA . C CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc9 C OD2 ASP 22 C ASP 22 1_555 H CA CA . C CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc10 C O GLY 23 C GLY 23 1_555 H CA CA . C CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc11 C OD1 ASP 25 C ASP 25 1_555 H CA CA . C CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc12 C O ALA 27 C ALA 27 1_555 H CA CA . C CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc13 E OD1 ASP 33 E ASP 33 1_555 I MG MG . E MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc14 E OD1 ASN 35 E ASN 35 1_555 I MG MG . E MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc15 E OD2 ASP 37 E ASP 37 1_555 I MG MG . E MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc16 E O PHE 39 E PHE 39 1_555 I MG MG . E MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc17 E OD2 ASP 44 E ASP 44 1_555 I MG MG . E MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc18 I MG MG . E MG 162 1_555 O O HOH . E HOH 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc19 F OD1 ASP 19 F ASP 19 1_555 J CA CA . F CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc20 F O ASP 19 F ASP 19 1_555 J CA CA . F CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc21 F OD1 ASP 22 F ASP 22 1_555 J CA CA . F CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc22 F O GLY 23 F GLY 23 1_555 J CA CA . F CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc23 F OD2 ASP 25 F ASP 25 1_555 J CA CA . F CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc24 F O ALA 27 F ALA 27 1_555 J CA CA . F CA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TUY _atom_sites.fract_transf_matrix[1][1] 0.019629 _atom_sites.fract_transf_matrix[1][2] -0.005837 _atom_sites.fract_transf_matrix[1][3] -0.000148 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015069 _atom_sites.fract_transf_matrix[2][3] -0.003252 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MG B 1 162 1 MG MG . H 5 CA C 1 157 1 CA CA . I 4 MG E 1 162 1 MG MG . J 5 CA F 1 157 1 CA CA . K 6 HOH A 1 1 1 HOH HOH . K 6 HOH A 2 11 11 HOH HOH . K 6 HOH A 3 21 21 HOH HOH . K 6 HOH A 4 23 23 HOH HOH . K 6 HOH A 5 25 25 HOH HOH . K 6 HOH A 6 43 43 HOH HOH . K 6 HOH A 7 61 61 HOH HOH . K 6 HOH A 8 74 74 HOH HOH . K 6 HOH A 9 89 89 HOH HOH . K 6 HOH A 10 90 90 HOH HOH . K 6 HOH A 11 102 102 HOH HOH . K 6 HOH A 12 106 106 HOH HOH . K 6 HOH A 13 111 111 HOH HOH . K 6 HOH A 14 115 115 HOH HOH . L 6 HOH B 1 163 5 HOH HOH . L 6 HOH B 2 164 8 HOH HOH . L 6 HOH B 3 165 10 HOH HOH . L 6 HOH B 4 166 20 HOH HOH . L 6 HOH B 5 167 28 HOH HOH . L 6 HOH B 6 168 30 HOH HOH . L 6 HOH B 7 169 31 HOH HOH . L 6 HOH B 8 170 34 HOH HOH . L 6 HOH B 9 171 37 HOH HOH . L 6 HOH B 10 172 42 HOH HOH . L 6 HOH B 11 173 48 HOH HOH . L 6 HOH B 12 174 50 HOH HOH . L 6 HOH B 13 175 53 HOH HOH . L 6 HOH B 14 176 55 HOH HOH . L 6 HOH B 15 177 70 HOH HOH . L 6 HOH B 16 178 71 HOH HOH . L 6 HOH B 17 179 73 HOH HOH . L 6 HOH B 18 180 75 HOH HOH . L 6 HOH B 19 181 76 HOH HOH . L 6 HOH B 20 182 84 HOH HOH . L 6 HOH B 21 183 88 HOH HOH . L 6 HOH B 22 184 91 HOH HOH . L 6 HOH B 23 185 95 HOH HOH . L 6 HOH B 24 186 98 HOH HOH . L 6 HOH B 25 187 99 HOH HOH . L 6 HOH B 26 188 101 HOH HOH . L 6 HOH B 27 189 107 HOH HOH . L 6 HOH B 28 190 108 HOH HOH . L 6 HOH B 29 191 112 HOH HOH . L 6 HOH B 30 192 113 HOH HOH . L 6 HOH B 31 193 122 HOH HOH . L 6 HOH B 32 194 124 HOH HOH . L 6 HOH B 33 195 126 HOH HOH . L 6 HOH B 34 196 127 HOH HOH . L 6 HOH B 35 197 129 HOH HOH . M 6 HOH C 1 158 3 HOH HOH . M 6 HOH C 2 159 14 HOH HOH . M 6 HOH C 3 160 17 HOH HOH . M 6 HOH C 4 161 18 HOH HOH . M 6 HOH C 5 162 26 HOH HOH . M 6 HOH C 6 163 29 HOH HOH . M 6 HOH C 7 164 35 HOH HOH . M 6 HOH C 8 165 38 HOH HOH . M 6 HOH C 9 166 44 HOH HOH . M 6 HOH C 10 167 49 HOH HOH . M 6 HOH C 11 168 51 HOH HOH . M 6 HOH C 12 169 52 HOH HOH . M 6 HOH C 13 170 59 HOH HOH . M 6 HOH C 14 171 62 HOH HOH . M 6 HOH C 15 172 63 HOH HOH . M 6 HOH C 16 173 66 HOH HOH . M 6 HOH C 17 174 69 HOH HOH . M 6 HOH C 18 175 77 HOH HOH . M 6 HOH C 19 176 81 HOH HOH . M 6 HOH C 20 177 82 HOH HOH . M 6 HOH C 21 178 83 HOH HOH . M 6 HOH C 22 179 87 HOH HOH . M 6 HOH C 23 180 96 HOH HOH . M 6 HOH C 24 181 100 HOH HOH . M 6 HOH C 25 182 103 HOH HOH . M 6 HOH C 26 183 110 HOH HOH . M 6 HOH C 27 184 114 HOH HOH . M 6 HOH C 28 185 116 HOH HOH . M 6 HOH C 29 186 117 HOH HOH . M 6 HOH C 30 187 119 HOH HOH . M 6 HOH C 31 188 120 HOH HOH . M 6 HOH C 32 189 128 HOH HOH . N 6 HOH D 1 9 9 HOH HOH . N 6 HOH D 2 64 64 HOH HOH . N 6 HOH D 3 85 85 HOH HOH . N 6 HOH D 4 118 118 HOH HOH . N 6 HOH D 5 121 121 HOH HOH . N 6 HOH D 6 123 123 HOH HOH . O 6 HOH E 1 163 4 HOH HOH . O 6 HOH E 2 164 6 HOH HOH . O 6 HOH E 3 165 13 HOH HOH . O 6 HOH E 4 166 40 HOH HOH . O 6 HOH E 5 167 41 HOH HOH . O 6 HOH E 6 168 47 HOH HOH . O 6 HOH E 7 169 57 HOH HOH . O 6 HOH E 8 170 68 HOH HOH . O 6 HOH E 9 171 72 HOH HOH . O 6 HOH E 10 172 80 HOH HOH . O 6 HOH E 11 173 93 HOH HOH . O 6 HOH E 12 174 104 HOH HOH . O 6 HOH E 13 175 105 HOH HOH . O 6 HOH E 14 176 130 HOH HOH . O 6 HOH E 15 177 132 HOH HOH . O 6 HOH E 16 178 133 HOH HOH . P 6 HOH F 1 158 2 HOH HOH . P 6 HOH F 2 159 7 HOH HOH . P 6 HOH F 3 160 15 HOH HOH . P 6 HOH F 4 161 16 HOH HOH . P 6 HOH F 5 162 19 HOH HOH . P 6 HOH F 6 163 22 HOH HOH . P 6 HOH F 7 164 32 HOH HOH . P 6 HOH F 8 165 33 HOH HOH . P 6 HOH F 9 166 39 HOH HOH . P 6 HOH F 10 167 45 HOH HOH . P 6 HOH F 11 168 46 HOH HOH . P 6 HOH F 12 169 54 HOH HOH . P 6 HOH F 13 170 58 HOH HOH . P 6 HOH F 14 171 60 HOH HOH . P 6 HOH F 15 172 67 HOH HOH . P 6 HOH F 16 173 79 HOH HOH . P 6 HOH F 17 174 92 HOH HOH . P 6 HOH F 18 175 94 HOH HOH . P 6 HOH F 19 176 97 HOH HOH . P 6 HOH F 20 177 125 HOH HOH . P 6 HOH F 21 178 131 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x 2.609 _atom_site.Cartn_y -35.481 _atom_site.Cartn_z 41.755 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 157 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #