data_3TV8
#
_model_server_result.job_id            7Bwuz467yHpaJHW01ihuaQ 
_model_server_result.datetime_utc      '2024-11-05 04:07:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tv8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":6}' 
#
_entry.id    3TV8 
#
_exptl.entry_id    3TV8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3TV8 
_cell.length_a            90.465 
_cell.length_b            90.465 
_cell.length_c            216.544 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TV8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 M N N 
? 5 N N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
5 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG A 692 NAG 
2 n C NAG 2 C 2 NAG A 693 NAG 
2 n C BMA 3 C 3 BMA A 694 BMA 
3 n D NAG 1 D 1 NAG B 692 NAG 
3 n D NAG 2 D 2 NAG B 693 NAG 
3 n D BMA 3 D 3 BMA B 694 BMA 
3 n D MAN 4 D 4 MAN B 695 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 21 A CYS 52 1_555 A SG CYS 63 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 25 A CYS 56 1_555 A SG CYS 32 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 111 A CYS 142 1_555 A SG CYS 141 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 A SG CYS 171 A CYS 202 1_555 A SG CYS 192 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 347 A CYS 378 1_555 A SG CYS 351 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf6 B SG CYS 21 B CYS 52 1_555 B SG CYS 63 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 B SG CYS 25 B CYS 56 1_555 B SG CYS 32 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf8 B SG CYS 111 B CYS 142 1_555 B SG CYS 141 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf9 B SG CYS 171 B CYS 202 1_555 B SG CYS 192 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 B SG CYS 347 B CYS 378 1_555 B SG CYS 351 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A ND2 ASN 108 A ASN 139 1_555 E C1 NAG . A NAG 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale2 A ND2 ASN 161 A ASN 192 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale3 A ND2 ASN 184 A ASN 215 1_555 F C1 NAG . A NAG 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale4 B ND2 ASN 108 B ASN 139 1_555 K C1 NAG . B NAG 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale5 B ND2 ASN 161 B ASN 192 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale6 B ND2 ASN 184 B ASN 215 1_555 L C1 NAG . B NAG 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale8 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale10 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale11 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 457 n n 
S O2 SO4 doub 458 n n 
S O3 SO4 sing 459 n n 
S O4 SO4 sing 460 n n 
#
_atom_sites.entry_id                     3TV8 
_atom_sites.fract_transf_matrix[1][1]    0.011054 
_atom_sites.fract_transf_matrix[1][2]    0.006382 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012764 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 NAG A 1 639 639 NAG NAG . 
F 4 NAG A 1 715 715 NAG NAG . 
G 5 SO4 A 1 8 8 SO4 SO4 . 
H 6 2PE A 1 9 9 2PE 2PE . 
I 6 2PE A 1 11 11 2PE 2PE . 
J 7 DGJ A 1 801 801 DGJ DGJ . 
K 4 NAG B 1 639 639 NAG NAG . 
L 4 NAG B 1 715 715 NAG NAG . 
M 5 SO4 B 1 6 6 SO4 SO4 . 
N 5 SO4 B 1 7 7 SO4 SO4 . 
O 6 2PE B 1 12 12 2PE 2PE . 
P 7 DGJ B 1 802 802 DGJ DGJ . 
Q 8 HOH A 1 3 3 HOH HOH . 
Q 8 HOH A 2 5 5 HOH HOH . 
Q 8 HOH A 3 6 6 HOH HOH . 
Q 8 HOH A 4 7 7 HOH HOH . 
Q 8 HOH A 5 20 20 HOH HOH . 
Q 8 HOH A 6 25 25 HOH HOH . 
Q 8 HOH A 7 26 26 HOH HOH . 
Q 8 HOH A 8 31 31 HOH HOH . 
Q 8 HOH A 9 436 32 HOH HOH . 
Q 8 HOH A 10 437 49 HOH HOH . 
Q 8 HOH A 11 438 58 HOH HOH . 
Q 8 HOH A 12 439 62 HOH HOH . 
Q 8 HOH A 13 440 63 HOH HOH . 
Q 8 HOH A 14 441 64 HOH HOH . 
Q 8 HOH A 15 442 79 HOH HOH . 
Q 8 HOH A 16 443 80 HOH HOH . 
Q 8 HOH A 17 444 81 HOH HOH . 
Q 8 HOH A 18 445 82 HOH HOH . 
Q 8 HOH A 19 446 86 HOH HOH . 
Q 8 HOH A 20 447 88 HOH HOH . 
Q 8 HOH A 21 448 94 HOH HOH . 
Q 8 HOH A 22 449 101 HOH HOH . 
Q 8 HOH A 23 450 108 HOH HOH . 
Q 8 HOH A 24 451 109 HOH HOH . 
Q 8 HOH A 25 452 110 HOH HOH . 
Q 8 HOH A 26 453 113 HOH HOH . 
Q 8 HOH A 27 454 116 HOH HOH . 
Q 8 HOH A 28 455 117 HOH HOH . 
Q 8 HOH A 29 456 119 HOH HOH . 
Q 8 HOH A 30 457 122 HOH HOH . 
Q 8 HOH A 31 458 124 HOH HOH . 
Q 8 HOH A 32 459 125 HOH HOH . 
Q 8 HOH A 33 460 126 HOH HOH . 
Q 8 HOH A 34 461 127 HOH HOH . 
Q 8 HOH A 35 462 128 HOH HOH . 
Q 8 HOH A 36 463 130 HOH HOH . 
R 8 HOH B 1 2 2 HOH HOH . 
R 8 HOH B 2 15 15 HOH HOH . 
R 8 HOH B 3 19 19 HOH HOH . 
R 8 HOH B 4 29 29 HOH HOH . 
R 8 HOH B 5 436 12 HOH HOH . 
R 8 HOH B 6 437 40 HOH HOH . 
R 8 HOH B 7 438 44 HOH HOH . 
R 8 HOH B 8 439 46 HOH HOH . 
R 8 HOH B 9 440 47 HOH HOH . 
R 8 HOH B 10 441 48 HOH HOH . 
R 8 HOH B 11 442 53 HOH HOH . 
R 8 HOH B 12 443 55 HOH HOH . 
R 8 HOH B 13 444 69 HOH HOH . 
R 8 HOH B 14 445 72 HOH HOH . 
R 8 HOH B 15 446 74 HOH HOH . 
R 8 HOH B 16 447 75 HOH HOH . 
R 8 HOH B 17 448 77 HOH HOH . 
R 8 HOH B 18 449 78 HOH HOH . 
R 8 HOH B 19 450 95 HOH HOH . 
R 8 HOH B 20 451 102 HOH HOH . 
R 8 HOH B 21 452 103 HOH HOH . 
R 8 HOH B 22 453 104 HOH HOH . 
R 8 HOH B 23 454 105 HOH HOH . 
R 8 HOH B 24 455 106 HOH HOH . 
R 8 HOH B 25 456 115 HOH HOH . 
R 8 HOH B 26 457 121 HOH HOH . 
R 8 HOH B 27 458 123 HOH HOH . 
R 8 HOH B 28 459 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . M 5 -17.98 62.509 72.147 1 58.66 ? S SO4 6 B 1 
HETATM 2 O O1 SO4 . . . M 5 -17.463 62.277 70.803 1 63.41 ? O1 SO4 6 B 1 
HETATM 3 O O2 SO4 . . . M 5 -19.136 61.651 72.395 1 56.76 ? O2 SO4 6 B 1 
HETATM 4 O O3 SO4 . . . M 5 -18.352 63.912 72.278 1 53.29 ? O3 SO4 6 B 1 
HETATM 5 O O4 SO4 . . . M 5 -16.946 62.202 73.125 1 66.11 ? O4 SO4 6 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#