data_3TVB # _model_server_result.job_id HDcPpUZ2oA5LIdChaNkIoQ _model_server_result.datetime_utc '2024-10-12 19:22:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":22}' # _entry.id 3TVB # _exptl.entry_id 3TVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TVB _cell.length_a 40.209 _cell.length_b 40.209 _cell.length_c 49.831 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 40.209 40.209 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 40.209 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 40.209 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O6 DG 1 A DG 1 1_555 E NA NA . A NA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc2 A O6 DG 2 A DG 2 1_555 E NA NA . A NA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc3 A O6 DG 2 A DG 2 1_555 F NA NA . A NA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc4 A O6 DG 3 A DG 3 1_555 F NA NA . A NA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc5 A O6 DG 3 A DG 3 1_555 G NA NA . A NA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc6 A O6 DG 4 A DG 4 1_555 G NA NA . A NA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc7 B O6 DG 1 B DG 5 1_555 J NA NA . B NA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc8 B O6 DG 2 B DG 6 1_555 J NA NA . B NA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc9 B O6 DG 2 B DG 6 1_555 K NA NA . B NA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc10 B O6 DG 3 B DG 7 1_555 K NA NA . B NA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc11 B O6 DG 3 B DG 7 1_555 L NA NA . B NA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? metalc ? metalc12 B O6 DG 4 B DG 8 1_555 L NA NA . B NA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc13 M NA NA . B NA 19 1_555 R O HOH . B HOH 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc14 M NA NA . B NA 19 1_555 R O HOH . B HOH 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc15 O MG MG . B MG 21 1_555 R O HOH . B HOH 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc16 P MG MG . B MG 22 1_555 R O HOH . B HOH 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc17 P MG MG . B MG 22 1_555 R O HOH . B HOH 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? hydrog TYPE_6_PAIR hydrog1 A N1 DG 1 A DG 1 1_555 A O6 DG 1 A DG 1 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 DG 1 A DG 1 1_555 A N7 DG 1 A DG 1 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N7 DG 1 A DG 1 1_555 A N2 DG 1 A DG 1 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A O6 DG 1 A DG 1 1_555 A N1 DG 1 A DG 1 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 DG 2 A DG 2 1_555 A O6 DG 2 A DG 2 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 DG 2 A DG 2 1_555 A N7 DG 2 A DG 2 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N7 DG 2 A DG 2 1_555 A N2 DG 2 A DG 2 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A O6 DG 2 A DG 2 1_555 A N1 DG 2 A DG 2 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N1 DG 3 A DG 3 1_555 A O6 DG 3 A DG 3 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A N2 DG 3 A DG 3 1_555 A N7 DG 3 A DG 3 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N7 DG 3 A DG 3 1_555 A N2 DG 3 A DG 3 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A O6 DG 3 A DG 3 1_555 A N1 DG 3 A DG 3 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N1 DG 4 A DG 4 1_555 A O6 DG 4 A DG 4 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A N2 DG 4 A DG 4 1_555 A N7 DG 4 A DG 4 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N7 DG 4 A DG 4 1_555 A N2 DG 4 A DG 4 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A O6 DG 4 A DG 4 1_555 A N1 DG 4 A DG 4 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 B N1 DG 1 B DG 5 1_555 B O6 DG 1 B DG 5 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 B N2 DG 1 B DG 5 1_555 B N7 DG 1 B DG 5 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 B N7 DG 1 B DG 5 1_555 B N2 DG 1 B DG 5 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 B O6 DG 1 B DG 5 1_555 B N1 DG 1 B DG 5 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 B N1 DG 2 B DG 6 1_555 B O6 DG 2 B DG 6 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 B N2 DG 2 B DG 6 1_555 B N7 DG 2 B DG 6 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 B N7 DG 2 B DG 6 1_555 B N2 DG 2 B DG 6 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog24 B O6 DG 2 B DG 6 1_555 B N1 DG 2 B DG 6 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog25 B N1 DG 3 B DG 7 1_555 B O6 DG 3 B DG 7 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog26 B N2 DG 3 B DG 7 1_555 B N7 DG 3 B DG 7 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog27 B N7 DG 3 B DG 7 1_555 B N2 DG 3 B DG 7 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog28 B O6 DG 3 B DG 7 1_555 B N1 DG 3 B DG 7 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog29 B N1 DG 4 B DG 8 1_555 B O6 DG 4 B DG 8 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog30 B N2 DG 4 B DG 8 1_555 B N7 DG 4 B DG 8 3_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog31 B N7 DG 4 B DG 8 1_555 B N2 DG 4 B DG 8 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog32 B O6 DG 4 B DG 8 1_555 B N1 DG 4 B DG 8 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TVB _atom_sites.fract_transf_matrix[1][1] 0.02487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DM1 A 1 9 9 DM1 DM1 . D 2 DM1 A 1 10 10 DM1 DM1 . E 3 NA A 1 13 13 NA NA . F 3 NA A 1 14 14 NA NA . G 3 NA A 1 15 15 NA NA . H 2 DM1 B 1 11 11 DM1 DM1 . I 2 DM1 B 1 12 12 DM1 DM1 . J 3 NA B 1 16 16 NA NA . K 3 NA B 1 17 17 NA NA . L 3 NA B 1 18 18 NA NA . M 3 NA B 1 19 19 NA NA . N 3 NA B 1 20 20 NA NA . O 4 MG B 1 21 21 MG MG . P 4 MG B 1 22 22 MG MG . Q 5 HOH A 1 101 101 HOH HOH . Q 5 HOH A 2 103 103 HOH HOH . Q 5 HOH A 3 107 107 HOH HOH . Q 5 HOH A 4 108 108 HOH HOH . Q 5 HOH A 5 115 115 HOH HOH . Q 5 HOH A 6 116 116 HOH HOH . Q 5 HOH A 7 120 120 HOH HOH . Q 5 HOH A 8 122 122 HOH HOH . Q 5 HOH A 9 123 123 HOH HOH . Q 5 HOH A 10 124 124 HOH HOH . Q 5 HOH A 11 127 127 HOH HOH . Q 5 HOH A 12 128 128 HOH HOH . Q 5 HOH A 13 129 129 HOH HOH . Q 5 HOH A 14 130 130 HOH HOH . Q 5 HOH A 15 133 133 HOH HOH . Q 5 HOH A 16 135 135 HOH HOH . Q 5 HOH A 17 137 137 HOH HOH . Q 5 HOH A 18 138 138 HOH HOH . Q 5 HOH A 19 139 139 HOH HOH . Q 5 HOH A 20 146 146 HOH HOH . Q 5 HOH A 21 148 148 HOH HOH . Q 5 HOH A 22 149 149 HOH HOH . Q 5 HOH A 23 151 151 HOH HOH . Q 5 HOH A 24 152 152 HOH HOH . Q 5 HOH A 25 153 153 HOH HOH . Q 5 HOH A 26 155 155 HOH HOH . Q 5 HOH A 27 156 156 HOH HOH . Q 5 HOH A 28 158 158 HOH HOH . Q 5 HOH A 29 164 164 HOH HOH . Q 5 HOH A 30 168 168 HOH HOH . Q 5 HOH A 31 169 169 HOH HOH . Q 5 HOH A 32 173 173 HOH HOH . Q 5 HOH A 33 175 175 HOH HOH . Q 5 HOH A 34 179 179 HOH HOH . Q 5 HOH A 35 183 183 HOH HOH . Q 5 HOH A 36 184 184 HOH HOH . Q 5 HOH A 37 186 186 HOH HOH . Q 5 HOH A 38 187 187 HOH HOH . Q 5 HOH A 39 190 190 HOH HOH . Q 5 HOH A 40 192 192 HOH HOH . Q 5 HOH A 41 195 195 HOH HOH . Q 5 HOH A 42 200 200 HOH HOH . Q 5 HOH A 43 201 201 HOH HOH . Q 5 HOH A 44 202 202 HOH HOH . Q 5 HOH A 45 207 207 HOH HOH . Q 5 HOH A 46 208 208 HOH HOH . Q 5 HOH A 47 209 209 HOH HOH . Q 5 HOH A 48 210 210 HOH HOH . Q 5 HOH A 49 211 211 HOH HOH . Q 5 HOH A 50 212 212 HOH HOH . R 5 HOH B 1 102 102 HOH HOH . R 5 HOH B 2 106 106 HOH HOH . R 5 HOH B 3 109 109 HOH HOH . R 5 HOH B 4 110 110 HOH HOH . R 5 HOH B 5 111 111 HOH HOH . R 5 HOH B 6 112 112 HOH HOH . R 5 HOH B 7 113 113 HOH HOH . R 5 HOH B 8 114 114 HOH HOH . R 5 HOH B 9 117 117 HOH HOH . R 5 HOH B 10 118 118 HOH HOH . R 5 HOH B 11 119 119 HOH HOH . R 5 HOH B 12 121 121 HOH HOH . R 5 HOH B 13 125 125 HOH HOH . R 5 HOH B 14 126 126 HOH HOH . R 5 HOH B 15 131 131 HOH HOH . R 5 HOH B 16 132 132 HOH HOH . R 5 HOH B 17 134 134 HOH HOH . R 5 HOH B 18 136 136 HOH HOH . R 5 HOH B 19 140 140 HOH HOH . R 5 HOH B 20 141 141 HOH HOH . R 5 HOH B 21 142 142 HOH HOH . R 5 HOH B 22 143 143 HOH HOH . R 5 HOH B 23 144 144 HOH HOH . R 5 HOH B 24 145 145 HOH HOH . R 5 HOH B 25 147 147 HOH HOH . R 5 HOH B 26 150 150 HOH HOH . R 5 HOH B 27 154 154 HOH HOH . R 5 HOH B 28 157 157 HOH HOH . R 5 HOH B 29 159 159 HOH HOH . R 5 HOH B 30 160 160 HOH HOH . R 5 HOH B 31 161 161 HOH HOH . R 5 HOH B 32 162 162 HOH HOH . R 5 HOH B 33 163 163 HOH HOH . R 5 HOH B 34 165 165 HOH HOH . R 5 HOH B 35 166 166 HOH HOH . R 5 HOH B 36 167 167 HOH HOH . R 5 HOH B 37 170 170 HOH HOH . R 5 HOH B 38 171 171 HOH HOH . R 5 HOH B 39 172 172 HOH HOH . R 5 HOH B 40 174 174 HOH HOH . R 5 HOH B 41 176 176 HOH HOH . R 5 HOH B 42 177 177 HOH HOH . R 5 HOH B 43 178 178 HOH HOH . R 5 HOH B 44 180 180 HOH HOH . R 5 HOH B 45 181 181 HOH HOH . R 5 HOH B 46 182 182 HOH HOH . R 5 HOH B 47 185 185 HOH HOH . R 5 HOH B 48 188 188 HOH HOH . R 5 HOH B 49 189 189 HOH HOH . R 5 HOH B 50 191 191 HOH HOH . R 5 HOH B 51 193 193 HOH HOH . R 5 HOH B 52 194 194 HOH HOH . R 5 HOH B 53 196 196 HOH HOH . R 5 HOH B 54 197 197 HOH HOH . R 5 HOH B 55 198 198 HOH HOH . R 5 HOH B 56 199 199 HOH HOH . R 5 HOH B 57 203 203 HOH HOH . R 5 HOH B 58 204 204 HOH HOH . R 5 HOH B 59 205 205 HOH HOH . R 5 HOH B 60 206 206 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 4 _atom_site.Cartn_x 20.104 _atom_site.Cartn_y 20.104 _atom_site.Cartn_z 32.217 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 17.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 22 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #