data_3TVC
#
_model_server_result.job_id            --AkgnzLL5VD-OsILq8DSg 
_model_server_result.datetime_utc      '2025-07-15 17:04:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tvc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":273}' 
#
_entry.id    3TVC 
#
_exptl.entry_id    3TVC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TVC 
_cell.length_a            60.303 
_cell.length_b            85.16 
_cell.length_c            40.916 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TVC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G O7 E3P . A E3P 1 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc2 G O6 E3P . A E3P 1 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc3 K O HOH . A HOH 14 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc4 K O HOH . A HOH 63 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc5 K O HOH . A HOH 65 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc6 A OD2 ASP 25 A ASP 128 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc7 A OD1 ASP 25 A ASP 128 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? 
metalc ? metalc8 A O ASP 59 A ASP 162 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc9 A NE2 HIS 69 A HIS 172 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc10 A OD2 ASP 71 A ASP 174 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc11 A OD1 ASP 76 A ASP 179 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc12 A O GLY 77 A GLY 180 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc13 A O SER 79 A SER 182 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc14 A O LEU 81 A LEU 184 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc15 A NE2 HIS 84 A HIS 187 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc16 A O ASN 91 A ASN 194 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc17 A O GLY 93 A GLY 196 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc18 A OD1 ASP 95 A ASP 198 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc19 A ND1 HIS 97 A HIS 200 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc20 A OD2 ASP 99 A ASP 202 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc21 A O ASP 100 A ASP 203 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc22 A OD1 ASP 100 A ASP 203 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc23 A O GLU 102 A GLU 205 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc24 A OE2 GLU 102 A GLU 205 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc25 A NE2 HIS 119 A HIS 222 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc26 A NE2 HIS 123 A HIS 226 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc27 A NE2 HIS 129 A HIS 232 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 284 n n 
C1 C2 PEG sing 285 n n 
C1 H11 PEG sing 286 n n 
C1 H12 PEG sing 287 n n 
O1 HO1 PEG sing 288 n n 
C2 O2 PEG sing 289 n n 
C2 H21 PEG sing 290 n n 
C2 H22 PEG sing 291 n n 
O2 C3 PEG sing 292 n n 
C3 C4 PEG sing 293 n n 
C3 H31 PEG sing 294 n n 
C3 H32 PEG sing 295 n n 
C4 O4 PEG sing 296 n n 
C4 H41 PEG sing 297 n n 
C4 H42 PEG sing 298 n n 
O4 HO4 PEG sing 299 n n 
#
_atom_sites.entry_id                     3TVC 
_atom_sites.fract_transf_matrix[1][1]    0.016583 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011743 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02444 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 501 501 ZN ZN . 
C 2 ZN A 1 502 502 ZN ZN . 
D 3 CA A 1 503 503 CA CA . 
E 3 CA A 1 504 504 CA CA . 
F 3 CA A 1 505 505 CA CA . 
G 4 E3P A 1 1 1 E3P E3P . 
H 5 PEG A 1 273 1 PEG PEG . 
I 5 PEG A 1 2 2 PEG PEG . 
J 5 PEG A 1 3 3 PEG PEG . 
K 6 HOH A 1 4 4 HOH HOH . 
K 6 HOH A 2 5 5 HOH HOH . 
K 6 HOH A 3 6 6 HOH HOH . 
K 6 HOH A 4 7 7 HOH HOH . 
K 6 HOH A 5 8 8 HOH HOH . 
K 6 HOH A 6 9 9 HOH HOH . 
K 6 HOH A 7 10 10 HOH HOH . 
K 6 HOH A 8 11 11 HOH HOH . 
K 6 HOH A 9 12 12 HOH HOH . 
K 6 HOH A 10 13 13 HOH HOH . 
K 6 HOH A 11 14 14 HOH HOH . 
K 6 HOH A 12 15 15 HOH HOH . 
K 6 HOH A 13 16 16 HOH HOH . 
K 6 HOH A 14 17 17 HOH HOH . 
K 6 HOH A 15 18 18 HOH HOH . 
K 6 HOH A 16 19 19 HOH HOH . 
K 6 HOH A 17 20 20 HOH HOH . 
K 6 HOH A 18 21 21 HOH HOH . 
K 6 HOH A 19 22 22 HOH HOH . 
K 6 HOH A 20 23 23 HOH HOH . 
K 6 HOH A 21 24 24 HOH HOH . 
K 6 HOH A 22 25 25 HOH HOH . 
K 6 HOH A 23 26 26 HOH HOH . 
K 6 HOH A 24 27 27 HOH HOH . 
K 6 HOH A 25 28 28 HOH HOH . 
K 6 HOH A 26 29 29 HOH HOH . 
K 6 HOH A 27 30 30 HOH HOH . 
K 6 HOH A 28 31 31 HOH HOH . 
K 6 HOH A 29 32 32 HOH HOH . 
K 6 HOH A 30 33 33 HOH HOH . 
K 6 HOH A 31 34 34 HOH HOH . 
K 6 HOH A 32 35 35 HOH HOH . 
K 6 HOH A 33 36 36 HOH HOH . 
K 6 HOH A 34 37 37 HOH HOH . 
K 6 HOH A 35 38 38 HOH HOH . 
K 6 HOH A 36 39 39 HOH HOH . 
K 6 HOH A 37 40 40 HOH HOH . 
K 6 HOH A 38 41 41 HOH HOH . 
K 6 HOH A 39 42 42 HOH HOH . 
K 6 HOH A 40 43 43 HOH HOH . 
K 6 HOH A 41 44 44 HOH HOH . 
K 6 HOH A 42 45 45 HOH HOH . 
K 6 HOH A 43 46 46 HOH HOH . 
K 6 HOH A 44 47 47 HOH HOH . 
K 6 HOH A 45 48 48 HOH HOH . 
K 6 HOH A 46 49 49 HOH HOH . 
K 6 HOH A 47 50 50 HOH HOH . 
K 6 HOH A 48 51 51 HOH HOH . 
K 6 HOH A 49 52 52 HOH HOH . 
K 6 HOH A 50 53 53 HOH HOH . 
K 6 HOH A 51 54 54 HOH HOH . 
K 6 HOH A 52 55 55 HOH HOH . 
K 6 HOH A 53 56 56 HOH HOH . 
K 6 HOH A 54 57 57 HOH HOH . 
K 6 HOH A 55 58 58 HOH HOH . 
K 6 HOH A 56 59 59 HOH HOH . 
K 6 HOH A 57 60 60 HOH HOH . 
K 6 HOH A 58 61 61 HOH HOH . 
K 6 HOH A 59 62 62 HOH HOH . 
K 6 HOH A 60 63 63 HOH HOH . 
K 6 HOH A 61 64 64 HOH HOH . 
K 6 HOH A 62 65 65 HOH HOH . 
K 6 HOH A 63 66 66 HOH HOH . 
K 6 HOH A 64 67 67 HOH HOH . 
K 6 HOH A 65 68 68 HOH HOH . 
K 6 HOH A 66 69 69 HOH HOH . 
K 6 HOH A 67 70 70 HOH HOH . 
K 6 HOH A 68 71 71 HOH HOH . 
K 6 HOH A 69 72 72 HOH HOH . 
K 6 HOH A 70 73 73 HOH HOH . 
K 6 HOH A 71 74 74 HOH HOH . 
K 6 HOH A 72 75 75 HOH HOH . 
K 6 HOH A 73 76 76 HOH HOH . 
K 6 HOH A 74 77 77 HOH HOH . 
K 6 HOH A 75 78 78 HOH HOH . 
K 6 HOH A 76 79 79 HOH HOH . 
K 6 HOH A 77 80 80 HOH HOH . 
K 6 HOH A 78 81 81 HOH HOH . 
K 6 HOH A 79 82 82 HOH HOH . 
K 6 HOH A 80 83 83 HOH HOH . 
K 6 HOH A 81 84 84 HOH HOH . 
K 6 HOH A 82 85 85 HOH HOH . 
K 6 HOH A 83 86 86 HOH HOH . 
K 6 HOH A 84 87 87 HOH HOH . 
K 6 HOH A 85 88 88 HOH HOH . 
K 6 HOH A 86 89 89 HOH HOH . 
K 6 HOH A 87 90 90 HOH HOH . 
K 6 HOH A 88 91 91 HOH HOH . 
K 6 HOH A 89 92 92 HOH HOH . 
K 6 HOH A 90 93 93 HOH HOH . 
K 6 HOH A 91 94 94 HOH HOH . 
K 6 HOH A 92 95 95 HOH HOH . 
K 6 HOH A 93 96 96 HOH HOH . 
K 6 HOH A 94 97 97 HOH HOH . 
K 6 HOH A 95 98 98 HOH HOH . 
K 6 HOH A 96 99 99 HOH HOH . 
K 6 HOH A 97 100 100 HOH HOH . 
K 6 HOH A 98 101 101 HOH HOH . 
K 6 HOH A 99 102 102 HOH HOH . 
K 6 HOH A 100 103 103 HOH HOH . 
K 6 HOH A 101 274 1 HOH HOH . 
K 6 HOH A 102 275 2 HOH HOH . 
K 6 HOH A 103 276 3 HOH HOH . 
K 6 HOH A 104 277 104 HOH HOH . 
K 6 HOH A 105 278 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . H 5 -12.765 -15.574 -12.38 1 53.15 ? C1 PEG 273 A 1 
HETATM 2 O O1 PEG . . . H 5 -12.151 -14.636 -11.483 1 49.49 ? O1 PEG 273 A 1 
HETATM 3 C C2 PEG . . . H 5 -13.083 -16.901 -11.687 1 59.07 ? C2 PEG 273 A 1 
HETATM 4 O O2 PEG . . . H 5 -13.557 -16.719 -10.344 1 56.32 ? O2 PEG 273 A 1 
HETATM 5 C C3 PEG . . . H 5 -14.703 -17.542 -10.098 1 59.15 ? C3 PEG 273 A 1 
HETATM 6 C C4 PEG . . . H 5 -14.377 -18.683 -9.139 1 36.86 ? C4 PEG 273 A 1 
HETATM 7 O O4 PEG . . . H 5 -13.698 -18.165 -7.988 1 44.09 ? O4 PEG 273 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#