data_3TVK # _model_server_result.job_id hDLhpQ5v3d0TqZrJhVoV7A _model_server_result.datetime_utc '2024-11-22 10:45:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 3TVK # _exptl.entry_id 3TVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TVK _cell.length_a 79.623 _cell.length_b 79.623 _cell.length_c 51.207 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B P1 C2E . A C2E 501 1_555 B O3' C2E . A C2E 501 4_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.653 ? metalc ? metalc1 A OD2 ASP 73 A ASP 198 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc2 C O1P C2E . A C2E 502 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc3 E MG MG . A MG 504 1_555 G O HOH . A HOH 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc4 E MG MG . A MG 504 1_555 G O HOH . A HOH 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 E MG MG . A MG 504 1_555 G O HOH . A HOH 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 E MG MG . A MG 504 1_555 G O HOH . A HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 366 n n O11 C1 TAR sing 367 n n O11 HO1 TAR sing 368 n n C1 C2 TAR sing 369 n n C2 O2 TAR sing 370 n n C2 C3 TAR sing 371 n n C2 H2 TAR sing 372 n n O2 HO2 TAR sing 373 n n C3 O3 TAR sing 374 n n C3 C4 TAR sing 375 n n C3 H3 TAR sing 376 n n O3 HO3 TAR sing 377 n n C4 O4 TAR doub 378 n n C4 O41 TAR sing 379 n n O41 HO4 TAR sing 380 n n # _atom_sites.entry_id 3TVK _atom_sites.fract_transf_matrix[1][1] 0.012559 _atom_sites.fract_transf_matrix[1][2] 0.007251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C2E A 1 501 501 C2E C2E . C 2 C2E A 1 502 503 C2E C2E . D 2 C2E A 1 503 505 C2E C2E . E 3 MG A 1 504 601 MG MG . F 4 TAR A 1 505 800 TAR TAR . G 5 HOH A 1 601 1 HOH HOH . G 5 HOH A 2 602 2 HOH HOH . G 5 HOH A 3 603 3 HOH HOH . G 5 HOH A 4 604 4 HOH HOH . G 5 HOH A 5 605 5 HOH HOH . G 5 HOH A 6 606 6 HOH HOH . G 5 HOH A 7 607 7 HOH HOH . G 5 HOH A 8 608 8 HOH HOH . G 5 HOH A 9 609 9 HOH HOH . G 5 HOH A 10 610 10 HOH HOH . G 5 HOH A 11 611 11 HOH HOH . G 5 HOH A 12 612 12 HOH HOH . G 5 HOH A 13 613 13 HOH HOH . G 5 HOH A 14 614 14 HOH HOH . G 5 HOH A 15 615 15 HOH HOH . G 5 HOH A 16 616 16 HOH HOH . G 5 HOH A 17 617 17 HOH HOH . G 5 HOH A 18 618 18 HOH HOH . G 5 HOH A 19 619 19 HOH HOH . G 5 HOH A 20 620 20 HOH HOH . G 5 HOH A 21 621 21 HOH HOH . G 5 HOH A 22 622 22 HOH HOH . G 5 HOH A 23 623 23 HOH HOH . G 5 HOH A 24 624 24 HOH HOH . G 5 HOH A 25 625 25 HOH HOH . G 5 HOH A 26 626 26 HOH HOH . G 5 HOH A 27 627 27 HOH HOH . G 5 HOH A 28 628 28 HOH HOH . G 5 HOH A 29 629 29 HOH HOH . G 5 HOH A 30 630 30 HOH HOH . G 5 HOH A 31 631 31 HOH HOH . G 5 HOH A 32 632 32 HOH HOH . G 5 HOH A 33 633 33 HOH HOH . G 5 HOH A 34 634 34 HOH HOH . G 5 HOH A 35 635 35 HOH HOH . G 5 HOH A 36 636 36 HOH HOH . G 5 HOH A 37 637 37 HOH HOH . G 5 HOH A 38 638 38 HOH HOH . G 5 HOH A 39 639 39 HOH HOH . G 5 HOH A 40 640 40 HOH HOH . G 5 HOH A 41 641 41 HOH HOH . G 5 HOH A 42 642 42 HOH HOH . G 5 HOH A 43 643 43 HOH HOH . G 5 HOH A 44 644 44 HOH HOH . G 5 HOH A 45 645 45 HOH HOH . G 5 HOH A 46 646 46 HOH HOH . G 5 HOH A 47 647 47 HOH HOH . G 5 HOH A 48 648 48 HOH HOH . G 5 HOH A 49 649 49 HOH HOH . G 5 HOH A 50 650 50 HOH HOH . G 5 HOH A 51 651 51 HOH HOH . G 5 HOH A 52 652 52 HOH HOH . G 5 HOH A 53 653 53 HOH HOH . G 5 HOH A 54 654 54 HOH HOH . G 5 HOH A 55 655 55 HOH HOH . G 5 HOH A 56 656 56 HOH HOH . G 5 HOH A 57 657 57 HOH HOH . G 5 HOH A 58 658 58 HOH HOH . G 5 HOH A 59 659 59 HOH HOH . G 5 HOH A 60 660 60 HOH HOH . G 5 HOH A 61 661 61 HOH HOH . G 5 HOH A 62 662 62 HOH HOH . G 5 HOH A 63 663 63 HOH HOH . G 5 HOH A 64 664 64 HOH HOH . G 5 HOH A 65 665 65 HOH HOH . G 5 HOH A 66 666 66 HOH HOH . G 5 HOH A 67 667 67 HOH HOH . G 5 HOH A 68 668 68 HOH HOH . G 5 HOH A 69 669 69 HOH HOH . G 5 HOH A 70 670 70 HOH HOH . G 5 HOH A 71 671 71 HOH HOH . G 5 HOH A 72 672 72 HOH HOH . G 5 HOH A 73 673 73 HOH HOH . G 5 HOH A 74 674 74 HOH HOH . G 5 HOH A 75 675 75 HOH HOH . G 5 HOH A 76 676 76 HOH HOH . G 5 HOH A 77 677 77 HOH HOH . G 5 HOH A 78 678 78 HOH HOH . G 5 HOH A 79 679 79 HOH HOH . G 5 HOH A 80 680 80 HOH HOH . G 5 HOH A 81 681 81 HOH HOH . G 5 HOH A 82 682 82 HOH HOH . G 5 HOH A 83 683 83 HOH HOH . G 5 HOH A 84 684 84 HOH HOH . G 5 HOH A 85 685 85 HOH HOH . G 5 HOH A 86 686 86 HOH HOH . G 5 HOH A 87 687 87 HOH HOH . G 5 HOH A 88 688 88 HOH HOH . G 5 HOH A 89 689 89 HOH HOH . G 5 HOH A 90 690 90 HOH HOH . G 5 HOH A 91 691 91 HOH HOH . G 5 HOH A 92 692 92 HOH HOH . G 5 HOH A 93 693 93 HOH HOH . G 5 HOH A 94 694 94 HOH HOH . G 5 HOH A 95 695 95 HOH HOH . G 5 HOH A 96 696 96 HOH HOH . G 5 HOH A 97 697 97 HOH HOH . G 5 HOH A 98 698 98 HOH HOH . G 5 HOH A 99 699 99 HOH HOH . G 5 HOH A 100 700 100 HOH HOH . G 5 HOH A 101 701 101 HOH HOH . G 5 HOH A 102 702 102 HOH HOH . G 5 HOH A 103 703 103 HOH HOH . G 5 HOH A 104 704 104 HOH HOH . G 5 HOH A 105 705 105 HOH HOH . G 5 HOH A 106 706 106 HOH HOH . G 5 HOH A 107 707 107 HOH HOH . G 5 HOH A 108 708 108 HOH HOH . G 5 HOH A 109 709 109 HOH HOH . G 5 HOH A 110 710 110 HOH HOH . G 5 HOH A 111 711 111 HOH HOH . G 5 HOH A 112 712 112 HOH HOH . G 5 HOH A 113 713 113 HOH HOH . G 5 HOH A 114 714 114 HOH HOH . G 5 HOH A 115 715 115 HOH HOH . G 5 HOH A 116 716 116 HOH HOH . G 5 HOH A 117 717 117 HOH HOH . G 5 HOH A 118 718 118 HOH HOH . G 5 HOH A 119 719 119 HOH HOH . G 5 HOH A 120 720 120 HOH HOH . G 5 HOH A 121 721 121 HOH HOH . G 5 HOH A 122 722 122 HOH HOH . G 5 HOH A 123 723 123 HOH HOH . G 5 HOH A 124 724 124 HOH HOH . G 5 HOH A 125 725 125 HOH HOH . G 5 HOH A 126 726 139 HOH HOH . G 5 HOH A 127 727 140 HOH HOH . G 5 HOH A 128 728 126 HOH HOH . G 5 HOH A 129 729 127 HOH HOH . G 5 HOH A 130 730 128 HOH HOH . G 5 HOH A 131 731 129 HOH HOH . G 5 HOH A 132 732 130 HOH HOH . G 5 HOH A 133 733 131 HOH HOH . G 5 HOH A 134 734 132 HOH HOH . G 5 HOH A 135 735 133 HOH HOH . G 5 HOH A 136 736 134 HOH HOH . G 5 HOH A 137 737 135 HOH HOH . G 5 HOH A 138 738 136 HOH HOH . G 5 HOH A 139 739 137 HOH HOH . G 5 HOH A 140 740 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 TAR . . . F 4 9.986 45.868 31.888 1 25.95 ? C2 TAR 505 A 1 HETATM 2 C C3 TAR . . . F 4 9.367 45.302 30.619 1 29.11 ? C3 TAR 505 A 1 HETATM 3 C C4 TAR . . . F 4 8.525 44.101 30.935 1 33.32 ? C4 TAR 505 A 1 HETATM 4 O O4 TAR . . . F 4 8.889 43.337 31.856 1 32.21 ? O4 TAR 505 A 1 HETATM 5 O O41 TAR . . . F 4 7.498 43.903 30.246 1 41.88 ? O41 TAR 505 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 418 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #