data_3TVQ # _model_server_result.job_id Uy7X78wIxU4SwmDnBuaLxw _model_server_result.datetime_utc '2024-11-07 13:17:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":380}' # _entry.id 3TVQ # _exptl.entry_id 3TVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.252 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R)-2-(3,4-DIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-2,3-DIHYDRO-4H-CHROMEN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TVQ _cell.length_a 72.455 _cell.length_b 105.011 _cell.length_c 51.088 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 O7' _chem_comp.formula_weight 304.252 _chem_comp.id DQH _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R)-2-(3,4-DIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-2,3-DIHYDRO-4H-CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2R,3R)-TRANS-DIHYDROQUERCETIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DQH doub 70 n y C1 C6 DQH sing 71 n y C1 H1 DQH sing 72 n n C2 C3 DQH sing 73 n y C2 O30 DQH sing 74 n n C3 C4 DQH doub 75 n y C3 C9 DQH sing 76 n n C4 C5 DQH sing 77 n y C4 O12 DQH sing 78 n n C5 C6 DQH doub 79 n y C5 H5 DQH sing 80 n n C6 O29 DQH sing 81 n n C9 C10 DQH sing 82 n n C9 O13 DQH doub 83 n n C10 C11 DQH sing 84 n n C10 O27 DQH sing 85 n n C10 H10 DQH sing 86 n n C11 C14 DQH sing 87 n n C11 O12 DQH sing 88 n n C11 H11 DQH sing 89 n n C14 C15 DQH doub 90 n y C14 C19 DQH sing 91 n y C15 C16 DQH sing 92 n y C15 H15 DQH sing 93 n n C16 C17 DQH doub 94 n y C16 H16 DQH sing 95 n n C17 C18 DQH sing 96 n y C17 O24 DQH sing 97 n n C18 C19 DQH doub 98 n y C18 O23 DQH sing 99 n n C19 H19 DQH sing 100 n n O23 H23 DQH sing 101 n n O24 H24 DQH sing 102 n n O27 H27 DQH sing 103 n n O29 H29 DQH sing 104 n n O30 H30 DQH sing 105 n n # _atom_sites.entry_id 3TVQ _atom_sites.fract_transf_matrix[1][1] 0.013802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DQH A 1 380 380 DQH DQH . C 3 HOH A 1 170 1 HOH HOH . C 3 HOH A 2 171 2 HOH HOH . C 3 HOH A 3 172 3 HOH HOH . C 3 HOH A 4 173 4 HOH HOH . C 3 HOH A 5 174 5 HOH HOH . C 3 HOH A 6 175 6 HOH HOH . C 3 HOH A 7 176 7 HOH HOH . C 3 HOH A 8 177 8 HOH HOH . C 3 HOH A 9 178 9 HOH HOH . C 3 HOH A 10 179 10 HOH HOH . C 3 HOH A 11 180 11 HOH HOH . C 3 HOH A 12 181 12 HOH HOH . C 3 HOH A 13 182 13 HOH HOH . C 3 HOH A 14 183 14 HOH HOH . C 3 HOH A 15 184 15 HOH HOH . C 3 HOH A 16 185 16 HOH HOH . C 3 HOH A 17 186 17 HOH HOH . C 3 HOH A 18 187 18 HOH HOH . C 3 HOH A 19 188 19 HOH HOH . C 3 HOH A 20 189 20 HOH HOH . C 3 HOH A 21 190 21 HOH HOH . C 3 HOH A 22 191 22 HOH HOH . C 3 HOH A 23 192 23 HOH HOH . C 3 HOH A 24 193 24 HOH HOH . C 3 HOH A 25 194 25 HOH HOH . C 3 HOH A 26 195 26 HOH HOH . C 3 HOH A 27 196 27 HOH HOH . C 3 HOH A 28 197 28 HOH HOH . C 3 HOH A 29 198 29 HOH HOH . C 3 HOH A 30 199 30 HOH HOH . C 3 HOH A 31 200 31 HOH HOH . C 3 HOH A 32 201 32 HOH HOH . C 3 HOH A 33 202 33 HOH HOH . C 3 HOH A 34 203 34 HOH HOH . C 3 HOH A 35 204 35 HOH HOH . C 3 HOH A 36 205 36 HOH HOH . C 3 HOH A 37 206 37 HOH HOH . C 3 HOH A 38 207 38 HOH HOH . C 3 HOH A 39 208 39 HOH HOH . C 3 HOH A 40 209 40 HOH HOH . C 3 HOH A 41 210 41 HOH HOH . C 3 HOH A 42 211 42 HOH HOH . C 3 HOH A 43 212 43 HOH HOH . C 3 HOH A 44 213 44 HOH HOH . C 3 HOH A 45 214 45 HOH HOH . C 3 HOH A 46 215 46 HOH HOH . C 3 HOH A 47 216 47 HOH HOH . C 3 HOH A 48 217 48 HOH HOH . C 3 HOH A 49 218 49 HOH HOH . C 3 HOH A 50 219 50 HOH HOH . C 3 HOH A 51 220 51 HOH HOH . C 3 HOH A 52 221 52 HOH HOH . C 3 HOH A 53 222 53 HOH HOH . C 3 HOH A 54 223 54 HOH HOH . C 3 HOH A 55 224 55 HOH HOH . C 3 HOH A 56 225 56 HOH HOH . C 3 HOH A 57 226 57 HOH HOH . C 3 HOH A 58 227 58 HOH HOH . C 3 HOH A 59 228 59 HOH HOH . C 3 HOH A 60 229 60 HOH HOH . C 3 HOH A 61 230 61 HOH HOH . C 3 HOH A 62 231 62 HOH HOH . C 3 HOH A 63 232 63 HOH HOH . C 3 HOH A 64 233 64 HOH HOH . C 3 HOH A 65 234 65 HOH HOH . C 3 HOH A 66 235 66 HOH HOH . C 3 HOH A 67 236 67 HOH HOH . C 3 HOH A 68 237 68 HOH HOH . C 3 HOH A 69 238 69 HOH HOH . C 3 HOH A 70 239 70 HOH HOH . C 3 HOH A 71 240 71 HOH HOH . C 3 HOH A 72 241 72 HOH HOH . C 3 HOH A 73 242 73 HOH HOH . C 3 HOH A 74 243 74 HOH HOH . C 3 HOH A 75 244 75 HOH HOH . C 3 HOH A 76 245 76 HOH HOH . C 3 HOH A 77 246 77 HOH HOH . C 3 HOH A 78 247 78 HOH HOH . C 3 HOH A 79 248 79 HOH HOH . C 3 HOH A 80 249 80 HOH HOH . C 3 HOH A 81 250 81 HOH HOH . C 3 HOH A 82 251 82 HOH HOH . C 3 HOH A 83 252 83 HOH HOH . C 3 HOH A 84 253 84 HOH HOH . C 3 HOH A 85 254 85 HOH HOH . C 3 HOH A 86 255 86 HOH HOH . C 3 HOH A 87 256 87 HOH HOH . C 3 HOH A 88 257 88 HOH HOH . C 3 HOH A 89 258 89 HOH HOH . C 3 HOH A 90 259 90 HOH HOH . C 3 HOH A 91 260 91 HOH HOH . C 3 HOH A 92 261 92 HOH HOH . C 3 HOH A 93 262 93 HOH HOH . C 3 HOH A 94 263 94 HOH HOH . C 3 HOH A 95 264 95 HOH HOH . C 3 HOH A 96 265 96 HOH HOH . C 3 HOH A 97 266 97 HOH HOH . C 3 HOH A 98 267 98 HOH HOH . C 3 HOH A 99 268 99 HOH HOH . C 3 HOH A 100 269 100 HOH HOH . C 3 HOH A 101 270 101 HOH HOH . C 3 HOH A 102 271 102 HOH HOH . C 3 HOH A 103 272 103 HOH HOH . C 3 HOH A 104 273 104 HOH HOH . C 3 HOH A 105 274 105 HOH HOH . C 3 HOH A 106 275 106 HOH HOH . C 3 HOH A 107 276 107 HOH HOH . C 3 HOH A 108 277 108 HOH HOH . C 3 HOH A 109 278 109 HOH HOH . C 3 HOH A 110 279 110 HOH HOH . C 3 HOH A 111 280 111 HOH HOH . C 3 HOH A 112 281 112 HOH HOH . C 3 HOH A 113 282 113 HOH HOH . C 3 HOH A 114 283 114 HOH HOH . C 3 HOH A 115 284 115 HOH HOH . C 3 HOH A 116 285 116 HOH HOH . C 3 HOH A 117 286 117 HOH HOH . C 3 HOH A 118 287 118 HOH HOH . C 3 HOH A 119 288 119 HOH HOH . C 3 HOH A 120 289 120 HOH HOH . C 3 HOH A 121 290 121 HOH HOH . C 3 HOH A 122 291 122 HOH HOH . C 3 HOH A 123 292 123 HOH HOH . C 3 HOH A 124 293 124 HOH HOH . C 3 HOH A 125 294 125 HOH HOH . C 3 HOH A 126 295 126 HOH HOH . C 3 HOH A 127 296 127 HOH HOH . C 3 HOH A 128 297 128 HOH HOH . C 3 HOH A 129 298 129 HOH HOH . C 3 HOH A 130 299 130 HOH HOH . C 3 HOH A 131 300 131 HOH HOH . C 3 HOH A 132 301 132 HOH HOH . C 3 HOH A 133 302 133 HOH HOH . C 3 HOH A 134 303 134 HOH HOH . C 3 HOH A 135 304 135 HOH HOH . C 3 HOH A 136 305 136 HOH HOH . C 3 HOH A 137 306 137 HOH HOH . C 3 HOH A 138 307 138 HOH HOH . C 3 HOH A 139 308 139 HOH HOH . C 3 HOH A 140 309 140 HOH HOH . C 3 HOH A 141 310 141 HOH HOH . C 3 HOH A 142 311 142 HOH HOH . C 3 HOH A 143 312 143 HOH HOH . C 3 HOH A 144 313 144 HOH HOH . C 3 HOH A 145 314 145 HOH HOH . C 3 HOH A 146 315 146 HOH HOH . C 3 HOH A 147 316 147 HOH HOH . C 3 HOH A 148 317 148 HOH HOH . C 3 HOH A 149 318 150 HOH HOH . C 3 HOH A 150 319 151 HOH HOH . C 3 HOH A 151 320 152 HOH HOH . C 3 HOH A 152 321 153 HOH HOH . C 3 HOH A 153 322 154 HOH HOH . C 3 HOH A 154 323 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DQH . . . B 2 65.129 3.712 27.558 1 22.42 ? C1 DQH 380 A 1 HETATM 2 C C2 DQH . . . B 2 64.873 3.926 26.169 1 23.07 ? C2 DQH 380 A 1 HETATM 3 C C3 DQH . . . B 2 63.775 4.804 25.724 1 21.09 ? C3 DQH 380 A 1 HETATM 4 C C4 DQH . . . B 2 62.961 5.452 26.791 1 20.25 ? C4 DQH 380 A 1 HETATM 5 C C5 DQH . . . B 2 63.226 5.234 28.159 1 21.45 ? C5 DQH 380 A 1 HETATM 6 C C6 DQH . . . B 2 64.291 4.377 28.533 1 22.26 ? C6 DQH 380 A 1 HETATM 7 C C9 DQH . . . B 2 63.43 5.08 24.312 1 21.22 ? C9 DQH 380 A 1 HETATM 8 C C10 DQH . . . B 2 62.222 5.994 24.049 1 21.28 ? C10 DQH 380 A 1 HETATM 9 C C11 DQH . . . B 2 61.992 7.013 25.17 1 21.74 ? C11 DQH 380 A 1 HETATM 10 C C14 DQH . . . B 2 60.8 7.937 25.031 1 21.44 ? C14 DQH 380 A 1 HETATM 11 C C15 DQH . . . B 2 59.499 7.382 24.753 1 21.73 ? C15 DQH 380 A 1 HETATM 12 C C16 DQH . . . B 2 58.338 8.204 24.608 1 23.46 ? C16 DQH 380 A 1 HETATM 13 C C17 DQH . . . B 2 58.473 9.607 24.742 1 23.07 ? C17 DQH 380 A 1 HETATM 14 C C18 DQH . . . B 2 59.77 10.192 25.024 1 24.64 ? C18 DQH 380 A 1 HETATM 15 C C19 DQH . . . B 2 60.92 9.363 25.166 1 22.62 ? C19 DQH 380 A 1 HETATM 16 O O12 DQH . . . B 2 61.899 6.306 26.474 1 21.1 ? O12 DQH 380 A 1 HETATM 17 O O13 DQH . . . B 2 64.065 4.582 23.346 1 23.33 ? O13 DQH 380 A 1 HETATM 18 O O23 DQH . . . B 2 59.899 11.561 25.155 1 27.21 ? O23 DQH 380 A 1 HETATM 19 O O24 DQH . . . B 2 57.401 10.448 24.61 1 25.25 ? O24 DQH 380 A 1 HETATM 20 O O27 DQH . . . B 2 62.343 6.642 22.795 1 22.14 ? O27 DQH 380 A 1 HETATM 21 O O29 DQH . . . B 2 64.548 4.159 29.844 1 21.45 ? O29 DQH 380 A 1 HETATM 22 O O30 DQH . . . B 2 65.659 3.299 25.264 1 25.22 ? O30 DQH 380 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #