data_3TVY # _model_server_result.job_id m8e9T8CbE5b1gvFWJsNbWw _model_server_result.datetime_utc '2025-03-27 08:15:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tvy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 3TVY # _exptl.entry_id 3TVY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TVY _cell.length_a 74.749 _cell.length_b 101.29 _cell.length_c 52.665 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TVY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 20 A SER 231 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 A OG SER 22 A SER 233 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 A OD1 ASP 173 A ASP 384 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 C MG MG . A MG 601 1_555 D O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 C MG MG . A MG 601 1_555 D O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 C MG MG . A MG 601 1_555 D O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 70 n n N1 C6 EPE sing 71 n n N1 C9 EPE sing 72 n n C2 C3 EPE sing 73 n n C2 H21 EPE sing 74 n n C2 H22 EPE sing 75 n n C3 N4 EPE sing 76 n n C3 H31 EPE sing 77 n n C3 H32 EPE sing 78 n n N4 C5 EPE sing 79 n n N4 C7 EPE sing 80 n n C5 C6 EPE sing 81 n n C5 H51 EPE sing 82 n n C5 H52 EPE sing 83 n n C6 H61 EPE sing 84 n n C6 H62 EPE sing 85 n n C7 C8 EPE sing 86 n n C7 H71 EPE sing 87 n n C7 H72 EPE sing 88 n n C8 O8 EPE sing 89 n n C8 H81 EPE sing 90 n n C8 H82 EPE sing 91 n n O8 HO8 EPE sing 92 n n C9 C10 EPE sing 93 n n C9 H91 EPE sing 94 n n C9 H92 EPE sing 95 n n C10 S EPE sing 96 n n C10 H101 EPE sing 97 n n C10 H102 EPE sing 98 n n S O1S EPE doub 99 n n S O2S EPE doub 100 n n S O3S EPE sing 101 n n O3S HOS3 EPE sing 102 n n # _atom_sites.entry_id 3TVY _atom_sites.fract_transf_matrix[1][1] 0.013378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 600 600 EPE EPE . C 3 MG A 1 601 601 MG MG . D 4 HOH A 1 602 602 HOH HOH . D 4 HOH A 2 603 603 HOH HOH . D 4 HOH A 3 604 604 HOH HOH . D 4 HOH A 4 702 702 HOH HOH . D 4 HOH A 5 703 703 HOH HOH . D 4 HOH A 6 704 704 HOH HOH . D 4 HOH A 7 705 705 HOH HOH . D 4 HOH A 8 706 706 HOH HOH . D 4 HOH A 9 707 707 HOH HOH . D 4 HOH A 10 708 708 HOH HOH . D 4 HOH A 11 709 709 HOH HOH . D 4 HOH A 12 710 710 HOH HOH . D 4 HOH A 13 711 711 HOH HOH . D 4 HOH A 14 712 712 HOH HOH . D 4 HOH A 15 713 713 HOH HOH . D 4 HOH A 16 714 714 HOH HOH . D 4 HOH A 17 715 715 HOH HOH . D 4 HOH A 18 716 716 HOH HOH . D 4 HOH A 19 717 717 HOH HOH . D 4 HOH A 20 718 718 HOH HOH . D 4 HOH A 21 719 719 HOH HOH . D 4 HOH A 22 720 720 HOH HOH . D 4 HOH A 23 721 721 HOH HOH . D 4 HOH A 24 722 722 HOH HOH . D 4 HOH A 25 723 723 HOH HOH . D 4 HOH A 26 724 724 HOH HOH . D 4 HOH A 27 725 725 HOH HOH . D 4 HOH A 28 726 726 HOH HOH . D 4 HOH A 29 727 727 HOH HOH . D 4 HOH A 30 728 728 HOH HOH . D 4 HOH A 31 729 729 HOH HOH . D 4 HOH A 32 731 731 HOH HOH . D 4 HOH A 33 732 732 HOH HOH . D 4 HOH A 34 733 733 HOH HOH . D 4 HOH A 35 734 734 HOH HOH . D 4 HOH A 36 736 736 HOH HOH . D 4 HOH A 37 737 737 HOH HOH . D 4 HOH A 38 738 738 HOH HOH . D 4 HOH A 39 739 739 HOH HOH . D 4 HOH A 40 740 740 HOH HOH . D 4 HOH A 41 741 741 HOH HOH . D 4 HOH A 42 742 742 HOH HOH . D 4 HOH A 43 743 743 HOH HOH . D 4 HOH A 44 745 745 HOH HOH . D 4 HOH A 45 746 746 HOH HOH . D 4 HOH A 46 747 747 HOH HOH . D 4 HOH A 47 748 748 HOH HOH . D 4 HOH A 48 749 749 HOH HOH . D 4 HOH A 49 750 750 HOH HOH . D 4 HOH A 50 751 751 HOH HOH . D 4 HOH A 51 752 752 HOH HOH . D 4 HOH A 52 753 753 HOH HOH . D 4 HOH A 53 754 754 HOH HOH . D 4 HOH A 54 755 755 HOH HOH . D 4 HOH A 55 756 756 HOH HOH . D 4 HOH A 56 757 757 HOH HOH . D 4 HOH A 57 758 758 HOH HOH . D 4 HOH A 58 759 759 HOH HOH . D 4 HOH A 59 760 760 HOH HOH . D 4 HOH A 60 761 761 HOH HOH . D 4 HOH A 61 762 762 HOH HOH . D 4 HOH A 62 763 763 HOH HOH . D 4 HOH A 63 764 764 HOH HOH . D 4 HOH A 64 765 765 HOH HOH . D 4 HOH A 65 766 766 HOH HOH . D 4 HOH A 66 767 767 HOH HOH . D 4 HOH A 67 768 768 HOH HOH . D 4 HOH A 68 769 769 HOH HOH . D 4 HOH A 69 770 770 HOH HOH . D 4 HOH A 70 771 771 HOH HOH . D 4 HOH A 71 772 772 HOH HOH . D 4 HOH A 72 773 773 HOH HOH . D 4 HOH A 73 774 774 HOH HOH . D 4 HOH A 74 775 775 HOH HOH . D 4 HOH A 75 776 776 HOH HOH . D 4 HOH A 76 777 777 HOH HOH . D 4 HOH A 77 778 778 HOH HOH . D 4 HOH A 78 779 779 HOH HOH . D 4 HOH A 79 780 780 HOH HOH . D 4 HOH A 80 781 781 HOH HOH . D 4 HOH A 81 782 782 HOH HOH . D 4 HOH A 82 783 783 HOH HOH . D 4 HOH A 83 784 784 HOH HOH . D 4 HOH A 84 785 785 HOH HOH . D 4 HOH A 85 786 786 HOH HOH . D 4 HOH A 86 787 787 HOH HOH . D 4 HOH A 87 788 788 HOH HOH . D 4 HOH A 88 789 789 HOH HOH . D 4 HOH A 89 790 790 HOH HOH . D 4 HOH A 90 791 791 HOH HOH . D 4 HOH A 91 792 792 HOH HOH . D 4 HOH A 92 794 794 HOH HOH . D 4 HOH A 93 795 795 HOH HOH . D 4 HOH A 94 796 796 HOH HOH . D 4 HOH A 95 797 797 HOH HOH . D 4 HOH A 96 798 798 HOH HOH . D 4 HOH A 97 799 799 HOH HOH . D 4 HOH A 98 800 800 HOH HOH . D 4 HOH A 99 801 801 HOH HOH . D 4 HOH A 100 802 802 HOH HOH . D 4 HOH A 101 803 803 HOH HOH . D 4 HOH A 102 804 804 HOH HOH . D 4 HOH A 103 805 805 HOH HOH . D 4 HOH A 104 806 806 HOH HOH . D 4 HOH A 105 807 807 HOH HOH . D 4 HOH A 106 808 808 HOH HOH . D 4 HOH A 107 810 810 HOH HOH . D 4 HOH A 108 811 811 HOH HOH . D 4 HOH A 109 813 813 HOH HOH . D 4 HOH A 110 814 814 HOH HOH . D 4 HOH A 111 815 815 HOH HOH . D 4 HOH A 112 816 816 HOH HOH . D 4 HOH A 113 817 817 HOH HOH . D 4 HOH A 114 818 818 HOH HOH . D 4 HOH A 115 819 819 HOH HOH . D 4 HOH A 116 820 820 HOH HOH . D 4 HOH A 117 821 821 HOH HOH . D 4 HOH A 118 822 822 HOH HOH . D 4 HOH A 119 823 823 HOH HOH . D 4 HOH A 120 824 824 HOH HOH . D 4 HOH A 121 825 825 HOH HOH . D 4 HOH A 122 826 826 HOH HOH . D 4 HOH A 123 827 827 HOH HOH . D 4 HOH A 124 828 828 HOH HOH . D 4 HOH A 125 829 829 HOH HOH . D 4 HOH A 126 830 830 HOH HOH . D 4 HOH A 127 831 831 HOH HOH . D 4 HOH A 128 832 832 HOH HOH . D 4 HOH A 129 833 833 HOH HOH . D 4 HOH A 130 834 834 HOH HOH . D 4 HOH A 131 835 835 HOH HOH . D 4 HOH A 132 836 836 HOH HOH . D 4 HOH A 133 837 837 HOH HOH . D 4 HOH A 134 838 838 HOH HOH . D 4 HOH A 135 839 839 HOH HOH . D 4 HOH A 136 840 840 HOH HOH . D 4 HOH A 137 841 841 HOH HOH . D 4 HOH A 138 842 842 HOH HOH . D 4 HOH A 139 843 843 HOH HOH . D 4 HOH A 140 844 844 HOH HOH . D 4 HOH A 141 845 845 HOH HOH . D 4 HOH A 142 847 847 HOH HOH . D 4 HOH A 143 848 848 HOH HOH . D 4 HOH A 144 849 849 HOH HOH . D 4 HOH A 145 850 850 HOH HOH . D 4 HOH A 146 851 851 HOH HOH . D 4 HOH A 147 852 852 HOH HOH . D 4 HOH A 148 853 853 HOH HOH . D 4 HOH A 149 854 854 HOH HOH . D 4 HOH A 150 855 855 HOH HOH . D 4 HOH A 151 856 856 HOH HOH . D 4 HOH A 152 857 857 HOH HOH . D 4 HOH A 153 858 858 HOH HOH . D 4 HOH A 154 859 859 HOH HOH . D 4 HOH A 155 860 860 HOH HOH . D 4 HOH A 156 861 861 HOH HOH . D 4 HOH A 157 862 862 HOH HOH . D 4 HOH A 158 863 863 HOH HOH . D 4 HOH A 159 864 864 HOH HOH . D 4 HOH A 160 865 865 HOH HOH . D 4 HOH A 161 866 866 HOH HOH . D 4 HOH A 162 867 867 HOH HOH . D 4 HOH A 163 868 868 HOH HOH . D 4 HOH A 164 869 869 HOH HOH . D 4 HOH A 165 870 870 HOH HOH . D 4 HOH A 166 871 871 HOH HOH . D 4 HOH A 167 872 872 HOH HOH . D 4 HOH A 168 873 873 HOH HOH . D 4 HOH A 169 874 874 HOH HOH . D 4 HOH A 170 875 875 HOH HOH . D 4 HOH A 171 876 876 HOH HOH . D 4 HOH A 172 877 877 HOH HOH . D 4 HOH A 173 878 878 HOH HOH . D 4 HOH A 174 879 879 HOH HOH . D 4 HOH A 175 880 880 HOH HOH . D 4 HOH A 176 881 881 HOH HOH . D 4 HOH A 177 882 882 HOH HOH . D 4 HOH A 178 883 883 HOH HOH . D 4 HOH A 179 884 884 HOH HOH . D 4 HOH A 180 886 886 HOH HOH . D 4 HOH A 181 887 887 HOH HOH . D 4 HOH A 182 888 888 HOH HOH . D 4 HOH A 183 889 889 HOH HOH . D 4 HOH A 184 890 890 HOH HOH . D 4 HOH A 185 891 891 HOH HOH . D 4 HOH A 186 892 892 HOH HOH . D 4 HOH A 187 893 893 HOH HOH . D 4 HOH A 188 894 894 HOH HOH . D 4 HOH A 189 895 895 HOH HOH . D 4 HOH A 190 896 896 HOH HOH . D 4 HOH A 191 897 897 HOH HOH . D 4 HOH A 192 898 898 HOH HOH . D 4 HOH A 193 899 899 HOH HOH . D 4 HOH A 194 900 900 HOH HOH . D 4 HOH A 195 901 901 HOH HOH . D 4 HOH A 196 903 903 HOH HOH . D 4 HOH A 197 904 904 HOH HOH . D 4 HOH A 198 905 905 HOH HOH . D 4 HOH A 199 906 906 HOH HOH . D 4 HOH A 200 907 907 HOH HOH . D 4 HOH A 201 908 908 HOH HOH . D 4 HOH A 202 909 909 HOH HOH . D 4 HOH A 203 910 910 HOH HOH . D 4 HOH A 204 911 911 HOH HOH . D 4 HOH A 205 912 912 HOH HOH . D 4 HOH A 206 913 913 HOH HOH . D 4 HOH A 207 914 914 HOH HOH . D 4 HOH A 208 915 915 HOH HOH . D 4 HOH A 209 916 916 HOH HOH . D 4 HOH A 210 917 917 HOH HOH . D 4 HOH A 211 918 918 HOH HOH . D 4 HOH A 212 919 919 HOH HOH . D 4 HOH A 213 920 920 HOH HOH . D 4 HOH A 214 921 921 HOH HOH . D 4 HOH A 215 922 922 HOH HOH . D 4 HOH A 216 923 923 HOH HOH . D 4 HOH A 217 924 924 HOH HOH . D 4 HOH A 218 925 925 HOH HOH . D 4 HOH A 219 927 927 HOH HOH . D 4 HOH A 220 929 929 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 -31.663 -13.706 0.13 1 36.61 ? N1 EPE 600 A 1 HETATM 2 C C2 EPE . . . B 2 -32.138 -12.354 0.474 1 36.67 ? C2 EPE 600 A 1 HETATM 3 C C3 EPE . . . B 2 -33.634 -12.157 0.339 1 39.44 ? C3 EPE 600 A 1 HETATM 4 N N4 EPE . . . B 2 -34.477 -13.312 0.615 1 40.84 ? N4 EPE 600 A 1 HETATM 5 C C5 EPE . . . B 2 -34.014 -14.661 0.309 1 38.34 ? C5 EPE 600 A 1 HETATM 6 C C6 EPE . . . B 2 -32.514 -14.84 0.569 1 38.38 ? C6 EPE 600 A 1 HETATM 7 C C7 EPE . . . B 2 -35.892 -12.96 0.544 1 42.91 ? C7 EPE 600 A 1 HETATM 8 C C8 EPE . . . B 2 -36.834 -14.036 -0.011 1 43.15 ? C8 EPE 600 A 1 HETATM 9 O O8 EPE . . . B 2 -38.072 -13.389 0.121 1 44.66 ? O8 EPE 600 A 1 HETATM 10 C C9 EPE . . . B 2 -30.368 -13.691 0.804 1 33.1 ? C9 EPE 600 A 1 HETATM 11 C C10 EPE . . . B 2 -29.566 -14.971 0.807 1 31.4 ? C10 EPE 600 A 1 HETATM 12 S S EPE . . . B 2 -27.853 -14.495 1.086 1 29.15 ? S EPE 600 A 1 HETATM 13 O O1S EPE . . . B 2 -27.1 -15.637 1.557 1 28.28 ? O1S EPE 600 A 1 HETATM 14 O O2S EPE . . . B 2 -27.266 -13.971 -0.155 1 25.83 ? O2S EPE 600 A 1 HETATM 15 O O3S EPE . . . B 2 -27.856 -13.463 2.124 1 30.25 ? O3S EPE 600 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 15 #