data_3TW1 # _model_server_result.job_id rMb4tCUOYqUaLTUDsCOfyQ _model_server_result.datetime_utc '2024-12-04 06:12:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":305}' # _entry.id 3TW1 # _exptl.entry_id 3TW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.12 _cell.angle_gamma 90 _cell.entry_id 3TW1 _cell.length_a 82.517 _cell.length_b 91.845 _cell.length_c 34.824 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 60 A LYS 124 1_555 A N MSE 61 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 61 A MSE 125 1_555 A N ALA 62 A ALA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C PHE 77 A PHE 141 1_555 A N MSE 78 A MSE 142 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C PHE 77 A PHE 141 1_555 A N MSE 78 A MSE 142 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C MSE 78 A MSE 142 1_555 A N THR 79 A THR 143 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 78 A MSE 142 1_555 A N THR 79 A THR 143 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale7 A C VAL 93 A VAL 157 1_555 A N MSE 94 A MSE 158 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.316 ? covale ? covale8 A C VAL 93 A VAL 157 1_555 A N MSE 94 A MSE 158 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.334 ? covale ? covale9 A C MSE 94 A MSE 158 1_555 A N THR 95 A THR 159 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale10 A C MSE 94 A MSE 158 1_555 A N THR 95 A THR 159 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale11 A C SER 220 A SER 284 1_555 A N MSE 221 A MSE 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale12 A C MSE 221 A MSE 285 1_555 A N ILE 222 A ILE 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 151 n n C1 C2 GOL sing 152 n n C1 H11 GOL sing 153 n n C1 H12 GOL sing 154 n n O1 HO1 GOL sing 155 n n C2 O2 GOL sing 156 n n C2 C3 GOL sing 157 n n C2 H2 GOL sing 158 n n O2 HO2 GOL sing 159 n n C3 O3 GOL sing 160 n n C3 H31 GOL sing 161 n n C3 H32 GOL sing 162 n n O3 HO3 GOL sing 163 n n # _atom_sites.entry_id 3TW1 _atom_sites.fract_transf_matrix[1][1] 0.012119 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003274 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AHN A 1 1 1 AHN AHN . C 2 AHN A 1 302 302 AHN AHN . D 3 GOL A 1 304 304 GOL GOL . E 3 GOL A 1 305 305 GOL GOL . F 4 HOH A 1 2 2 HOH HOH . F 4 HOH A 2 3 3 HOH HOH . F 4 HOH A 3 4 4 HOH HOH . F 4 HOH A 4 5 5 HOH HOH . F 4 HOH A 5 6 6 HOH HOH . F 4 HOH A 6 7 7 HOH HOH . F 4 HOH A 7 9 9 HOH HOH . F 4 HOH A 8 10 10 HOH HOH . F 4 HOH A 9 11 11 HOH HOH . F 4 HOH A 10 12 12 HOH HOH . F 4 HOH A 11 13 13 HOH HOH . F 4 HOH A 12 14 14 HOH HOH . F 4 HOH A 13 15 15 HOH HOH . F 4 HOH A 14 16 16 HOH HOH . F 4 HOH A 15 17 17 HOH HOH . F 4 HOH A 16 18 18 HOH HOH . F 4 HOH A 17 19 19 HOH HOH . F 4 HOH A 18 20 20 HOH HOH . F 4 HOH A 19 21 21 HOH HOH . F 4 HOH A 20 22 22 HOH HOH . F 4 HOH A 21 23 23 HOH HOH . F 4 HOH A 22 24 24 HOH HOH . F 4 HOH A 23 25 25 HOH HOH . F 4 HOH A 24 26 26 HOH HOH . F 4 HOH A 25 27 27 HOH HOH . F 4 HOH A 26 28 28 HOH HOH . F 4 HOH A 27 29 29 HOH HOH . F 4 HOH A 28 30 30 HOH HOH . F 4 HOH A 29 31 31 HOH HOH . F 4 HOH A 30 32 32 HOH HOH . F 4 HOH A 31 33 33 HOH HOH . F 4 HOH A 32 34 34 HOH HOH . F 4 HOH A 33 35 35 HOH HOH . F 4 HOH A 34 36 36 HOH HOH . F 4 HOH A 35 37 37 HOH HOH . F 4 HOH A 36 38 38 HOH HOH . F 4 HOH A 37 39 39 HOH HOH . F 4 HOH A 38 40 40 HOH HOH . F 4 HOH A 39 41 41 HOH HOH . F 4 HOH A 40 42 42 HOH HOH . F 4 HOH A 41 43 43 HOH HOH . F 4 HOH A 42 44 44 HOH HOH . F 4 HOH A 43 45 45 HOH HOH . F 4 HOH A 44 46 46 HOH HOH . F 4 HOH A 45 47 47 HOH HOH . F 4 HOH A 46 48 48 HOH HOH . F 4 HOH A 47 49 49 HOH HOH . F 4 HOH A 48 50 50 HOH HOH . F 4 HOH A 49 51 51 HOH HOH . F 4 HOH A 50 52 52 HOH HOH . F 4 HOH A 51 53 53 HOH HOH . F 4 HOH A 52 55 55 HOH HOH . F 4 HOH A 53 56 56 HOH HOH . F 4 HOH A 54 57 57 HOH HOH . F 4 HOH A 55 58 58 HOH HOH . F 4 HOH A 56 59 59 HOH HOH . F 4 HOH A 57 60 60 HOH HOH . F 4 HOH A 58 61 61 HOH HOH . F 4 HOH A 59 62 62 HOH HOH . F 4 HOH A 60 63 63 HOH HOH . F 4 HOH A 61 64 64 HOH HOH . F 4 HOH A 62 303 1 HOH HOH . F 4 HOH A 63 306 65 HOH HOH . F 4 HOH A 64 307 66 HOH HOH . F 4 HOH A 65 308 67 HOH HOH . F 4 HOH A 66 309 68 HOH HOH . F 4 HOH A 67 310 69 HOH HOH . F 4 HOH A 68 311 70 HOH HOH . F 4 HOH A 69 312 71 HOH HOH . F 4 HOH A 70 313 72 HOH HOH . F 4 HOH A 71 314 73 HOH HOH . F 4 HOH A 72 315 74 HOH HOH . F 4 HOH A 73 316 75 HOH HOH . F 4 HOH A 74 317 77 HOH HOH . F 4 HOH A 75 318 78 HOH HOH . F 4 HOH A 76 319 79 HOH HOH . F 4 HOH A 77 320 80 HOH HOH . F 4 HOH A 78 321 81 HOH HOH . F 4 HOH A 79 322 82 HOH HOH . F 4 HOH A 80 323 83 HOH HOH . F 4 HOH A 81 324 84 HOH HOH . F 4 HOH A 82 325 85 HOH HOH . F 4 HOH A 83 326 86 HOH HOH . F 4 HOH A 84 327 87 HOH HOH . F 4 HOH A 85 328 88 HOH HOH . F 4 HOH A 86 329 89 HOH HOH . F 4 HOH A 87 330 90 HOH HOH . F 4 HOH A 88 331 91 HOH HOH . F 4 HOH A 89 332 92 HOH HOH . F 4 HOH A 90 333 93 HOH HOH . F 4 HOH A 91 334 94 HOH HOH . F 4 HOH A 92 335 95 HOH HOH . F 4 HOH A 93 336 96 HOH HOH . F 4 HOH A 94 337 97 HOH HOH . F 4 HOH A 95 338 98 HOH HOH . F 4 HOH A 96 339 99 HOH HOH . F 4 HOH A 97 340 100 HOH HOH . F 4 HOH A 98 341 101 HOH HOH . F 4 HOH A 99 342 102 HOH HOH . F 4 HOH A 100 343 103 HOH HOH . F 4 HOH A 101 344 104 HOH HOH . F 4 HOH A 102 345 105 HOH HOH . F 4 HOH A 103 346 106 HOH HOH . F 4 HOH A 104 347 107 HOH HOH . F 4 HOH A 105 348 108 HOH HOH . F 4 HOH A 106 349 110 HOH HOH . F 4 HOH A 107 350 111 HOH HOH . F 4 HOH A 108 351 112 HOH HOH . F 4 HOH A 109 352 113 HOH HOH . F 4 HOH A 110 353 114 HOH HOH . F 4 HOH A 111 354 115 HOH HOH . F 4 HOH A 112 355 116 HOH HOH . F 4 HOH A 113 356 117 HOH HOH . F 4 HOH A 114 357 118 HOH HOH . F 4 HOH A 115 358 119 HOH HOH . F 4 HOH A 116 359 120 HOH HOH . F 4 HOH A 117 360 121 HOH HOH . F 4 HOH A 118 361 122 HOH HOH . F 4 HOH A 119 362 123 HOH HOH . F 4 HOH A 120 363 124 HOH HOH . F 4 HOH A 121 364 125 HOH HOH . F 4 HOH A 122 365 126 HOH HOH . F 4 HOH A 123 366 127 HOH HOH . F 4 HOH A 124 367 128 HOH HOH . F 4 HOH A 125 368 130 HOH HOH . F 4 HOH A 126 369 131 HOH HOH . F 4 HOH A 127 370 132 HOH HOH . F 4 HOH A 128 371 133 HOH HOH . F 4 HOH A 129 372 135 HOH HOH . F 4 HOH A 130 373 136 HOH HOH . F 4 HOH A 131 374 137 HOH HOH . F 4 HOH A 132 375 138 HOH HOH . F 4 HOH A 133 376 139 HOH HOH . F 4 HOH A 134 377 140 HOH HOH . F 4 HOH A 135 378 141 HOH HOH . F 4 HOH A 136 379 142 HOH HOH . F 4 HOH A 137 380 143 HOH HOH . F 4 HOH A 138 381 144 HOH HOH . F 4 HOH A 139 382 145 HOH HOH . F 4 HOH A 140 383 146 HOH HOH . F 4 HOH A 141 384 147 HOH HOH . F 4 HOH A 142 385 148 HOH HOH . F 4 HOH A 143 386 149 HOH HOH . F 4 HOH A 144 387 150 HOH HOH . F 4 HOH A 145 388 151 HOH HOH . F 4 HOH A 146 389 152 HOH HOH . F 4 HOH A 147 390 153 HOH HOH . F 4 HOH A 148 391 154 HOH HOH . F 4 HOH A 149 392 155 HOH HOH . F 4 HOH A 150 393 156 HOH HOH . F 4 HOH A 151 394 157 HOH HOH . F 4 HOH A 152 395 158 HOH HOH . F 4 HOH A 153 396 159 HOH HOH . F 4 HOH A 154 397 160 HOH HOH . F 4 HOH A 155 398 161 HOH HOH . F 4 HOH A 156 399 162 HOH HOH . F 4 HOH A 157 400 163 HOH HOH . F 4 HOH A 158 401 164 HOH HOH . F 4 HOH A 159 402 165 HOH HOH . F 4 HOH A 160 403 166 HOH HOH . F 4 HOH A 161 404 168 HOH HOH . F 4 HOH A 162 405 169 HOH HOH . F 4 HOH A 163 406 170 HOH HOH . F 4 HOH A 164 407 171 HOH HOH . F 4 HOH A 165 408 172 HOH HOH . F 4 HOH A 166 409 173 HOH HOH . F 4 HOH A 167 410 174 HOH HOH . F 4 HOH A 168 411 175 HOH HOH . F 4 HOH A 169 412 176 HOH HOH . F 4 HOH A 170 413 177 HOH HOH . F 4 HOH A 171 414 178 HOH HOH . F 4 HOH A 172 415 179 HOH HOH . F 4 HOH A 173 416 180 HOH HOH . F 4 HOH A 174 417 181 HOH HOH . F 4 HOH A 175 418 182 HOH HOH . F 4 HOH A 176 419 183 HOH HOH . F 4 HOH A 177 420 184 HOH HOH . F 4 HOH A 178 421 185 HOH HOH . F 4 HOH A 179 422 186 HOH HOH . F 4 HOH A 180 423 187 HOH HOH . F 4 HOH A 181 424 188 HOH HOH . F 4 HOH A 182 425 189 HOH HOH . F 4 HOH A 183 426 190 HOH HOH . F 4 HOH A 184 427 191 HOH HOH . F 4 HOH A 185 428 192 HOH HOH . F 4 HOH A 186 429 193 HOH HOH . F 4 HOH A 187 430 194 HOH HOH . F 4 HOH A 188 431 195 HOH HOH . F 4 HOH A 189 432 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 28.534 69.465 7.143 1 56.97 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . E 3 28.565 68.038 7.282 1 37.92 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . E 3 27.198 70.063 6.622 1 54.53 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . E 3 26.059 69.469 7.172 1 55.86 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . E 3 26.998 71.535 6.944 1 56 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . E 3 25.589 71.702 7.117 1 63.69 ? O3 GOL 305 A 1 HETATM 7 H H11 GOL . . . E 3 29.333 69.763 6.464 1 68.35 ? H11 GOL 305 A 1 HETATM 8 H H12 GOL . . . E 3 28.757 69.911 8.112 1 68.35 ? H12 GOL 305 A 1 HETATM 9 H HO1 GOL . . . E 3 29.464 67.756 7.552 1 45.48 ? HO1 GOL 305 A 1 HETATM 10 H H2 GOL . . . E 3 27.176 69.947 5.538 1 65.42 ? H2 GOL 305 A 1 HETATM 11 H HO2 GOL . . . E 3 26.026 69.655 8.134 1 67.02 ? HO2 GOL 305 A 1 HETATM 12 H H31 GOL . . . E 3 27.36 72.158 6.127 1 67.18 ? H31 GOL 305 A 1 HETATM 13 H H32 GOL . . . E 3 27.53 71.802 7.857 1 67.18 ? H32 GOL 305 A 1 HETATM 14 H HO3 GOL . . . E 3 25.396 71.897 8.058 1 76.41 ? HO3 GOL 305 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #