data_3TW3 # _model_server_result.job_id g3eCZZIVjiW7EdAv_LtVDg _model_server_result.datetime_utc '2025-03-22 07:06:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3TW3 # _exptl.entry_id 3TW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TW3 _cell.length_a 69.66 _cell.length_b 82.95 _cell.length_c 51.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 33 A GLU 14 1_555 C CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc2 A NE2 HIS 177 A HIS 158 1_555 E CO CO . A CO 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc3 A NE2 HIS 244 A HIS 225 1_555 D CO CO . A CO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc4 G O HOH . A HOH 370 1_555 C CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc5 B O1B ATP . A ATP 401 1_555 C CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc6 B O2A ATP . A ATP 401 1_555 C CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc7 B O1G ATP . A ATP 401 1_555 C CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc8 G O HOH . A HOH 423 1_555 C CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3TW3 _atom_sites.fract_transf_matrix[1][1] 0.014355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 401 ATP ATP . C 3 CO A 1 501 501 CO CO . D 3 CO A 1 340 1 CO CO . E 3 CO A 1 341 2 CO CO . F 4 SO4 A 1 342 201 SO4 SO4 . G 5 HOH A 1 343 1 HOH HOH . G 5 HOH A 2 344 2 HOH HOH . G 5 HOH A 3 345 3 HOH HOH . G 5 HOH A 4 346 4 HOH HOH . G 5 HOH A 5 347 5 HOH HOH . G 5 HOH A 6 348 6 HOH HOH . G 5 HOH A 7 349 7 HOH HOH . G 5 HOH A 8 350 8 HOH HOH . G 5 HOH A 9 351 9 HOH HOH . G 5 HOH A 10 352 10 HOH HOH . G 5 HOH A 11 353 11 HOH HOH . G 5 HOH A 12 354 12 HOH HOH . G 5 HOH A 13 355 13 HOH HOH . G 5 HOH A 14 356 14 HOH HOH . G 5 HOH A 15 357 15 HOH HOH . G 5 HOH A 16 358 16 HOH HOH . G 5 HOH A 17 359 17 HOH HOH . G 5 HOH A 18 360 18 HOH HOH . G 5 HOH A 19 361 19 HOH HOH . G 5 HOH A 20 362 20 HOH HOH . G 5 HOH A 21 363 21 HOH HOH . G 5 HOH A 22 364 22 HOH HOH . G 5 HOH A 23 365 23 HOH HOH . G 5 HOH A 24 366 24 HOH HOH . G 5 HOH A 25 367 25 HOH HOH . G 5 HOH A 26 368 26 HOH HOH . G 5 HOH A 27 369 27 HOH HOH . G 5 HOH A 28 370 28 HOH HOH . G 5 HOH A 29 371 29 HOH HOH . G 5 HOH A 30 372 30 HOH HOH . G 5 HOH A 31 373 31 HOH HOH . G 5 HOH A 32 374 32 HOH HOH . G 5 HOH A 33 375 33 HOH HOH . G 5 HOH A 34 376 34 HOH HOH . G 5 HOH A 35 377 35 HOH HOH . G 5 HOH A 36 378 36 HOH HOH . G 5 HOH A 37 379 37 HOH HOH . G 5 HOH A 38 380 38 HOH HOH . G 5 HOH A 39 381 39 HOH HOH . G 5 HOH A 40 382 40 HOH HOH . G 5 HOH A 41 383 41 HOH HOH . G 5 HOH A 42 384 42 HOH HOH . G 5 HOH A 43 385 43 HOH HOH . G 5 HOH A 44 386 44 HOH HOH . G 5 HOH A 45 387 45 HOH HOH . G 5 HOH A 46 388 46 HOH HOH . G 5 HOH A 47 389 47 HOH HOH . G 5 HOH A 48 390 48 HOH HOH . G 5 HOH A 49 391 49 HOH HOH . G 5 HOH A 50 392 50 HOH HOH . G 5 HOH A 51 393 51 HOH HOH . G 5 HOH A 52 394 52 HOH HOH . G 5 HOH A 53 395 53 HOH HOH . G 5 HOH A 54 396 54 HOH HOH . G 5 HOH A 55 397 55 HOH HOH . G 5 HOH A 56 398 56 HOH HOH . G 5 HOH A 57 399 57 HOH HOH . G 5 HOH A 58 400 58 HOH HOH . G 5 HOH A 59 402 59 HOH HOH . G 5 HOH A 60 403 60 HOH HOH . G 5 HOH A 61 404 61 HOH HOH . G 5 HOH A 62 405 62 HOH HOH . G 5 HOH A 63 406 63 HOH HOH . G 5 HOH A 64 407 64 HOH HOH . G 5 HOH A 65 408 65 HOH HOH . G 5 HOH A 66 409 66 HOH HOH . G 5 HOH A 67 410 67 HOH HOH . G 5 HOH A 68 411 68 HOH HOH . G 5 HOH A 69 412 69 HOH HOH . G 5 HOH A 70 413 70 HOH HOH . G 5 HOH A 71 414 71 HOH HOH . G 5 HOH A 72 415 72 HOH HOH . G 5 HOH A 73 416 73 HOH HOH . G 5 HOH A 74 417 74 HOH HOH . G 5 HOH A 75 418 75 HOH HOH . G 5 HOH A 76 419 76 HOH HOH . G 5 HOH A 77 420 77 HOH HOH . G 5 HOH A 78 421 78 HOH HOH . G 5 HOH A 79 422 79 HOH HOH . G 5 HOH A 80 423 80 HOH HOH . G 5 HOH A 81 424 81 HOH HOH . G 5 HOH A 82 425 82 HOH HOH . G 5 HOH A 83 426 83 HOH HOH . G 5 HOH A 84 427 84 HOH HOH . G 5 HOH A 85 428 85 HOH HOH . G 5 HOH A 86 429 86 HOH HOH . G 5 HOH A 87 430 87 HOH HOH . G 5 HOH A 88 431 88 HOH HOH . G 5 HOH A 89 432 89 HOH HOH . G 5 HOH A 90 433 90 HOH HOH . G 5 HOH A 91 434 91 HOH HOH . G 5 HOH A 92 435 92 HOH HOH . G 5 HOH A 93 436 93 HOH HOH . G 5 HOH A 94 437 94 HOH HOH . G 5 HOH A 95 438 95 HOH HOH . G 5 HOH A 96 439 96 HOH HOH . G 5 HOH A 97 440 97 HOH HOH . G 5 HOH A 98 441 98 HOH HOH . G 5 HOH A 99 442 99 HOH HOH . G 5 HOH A 100 443 100 HOH HOH . G 5 HOH A 101 444 101 HOH HOH . G 5 HOH A 102 445 102 HOH HOH . G 5 HOH A 103 446 103 HOH HOH . G 5 HOH A 104 447 104 HOH HOH . G 5 HOH A 105 448 105 HOH HOH . G 5 HOH A 106 449 106 HOH HOH . G 5 HOH A 107 450 107 HOH HOH . G 5 HOH A 108 451 108 HOH HOH . G 5 HOH A 109 452 109 HOH HOH . G 5 HOH A 110 453 110 HOH HOH . G 5 HOH A 111 454 111 HOH HOH . G 5 HOH A 112 455 112 HOH HOH . G 5 HOH A 113 456 113 HOH HOH . G 5 HOH A 114 457 114 HOH HOH . G 5 HOH A 115 458 115 HOH HOH . G 5 HOH A 116 459 116 HOH HOH . G 5 HOH A 117 460 117 HOH HOH . G 5 HOH A 118 461 118 HOH HOH . G 5 HOH A 119 462 119 HOH HOH . G 5 HOH A 120 463 120 HOH HOH . G 5 HOH A 121 464 121 HOH HOH . G 5 HOH A 122 465 122 HOH HOH . G 5 HOH A 123 466 123 HOH HOH . G 5 HOH A 124 467 124 HOH HOH . G 5 HOH A 125 468 125 HOH HOH . G 5 HOH A 126 469 126 HOH HOH . G 5 HOH A 127 470 127 HOH HOH . G 5 HOH A 128 471 128 HOH HOH . G 5 HOH A 129 472 129 HOH HOH . G 5 HOH A 130 473 130 HOH HOH . G 5 HOH A 131 474 131 HOH HOH . G 5 HOH A 132 475 132 HOH HOH . G 5 HOH A 133 476 133 HOH HOH . G 5 HOH A 134 477 134 HOH HOH . G 5 HOH A 135 478 135 HOH HOH . G 5 HOH A 136 479 136 HOH HOH . G 5 HOH A 137 480 137 HOH HOH . G 5 HOH A 138 481 138 HOH HOH . G 5 HOH A 139 482 139 HOH HOH . G 5 HOH A 140 483 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 10.556 -15.352 -15.766 1 43.8 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . B 2 9.818 -14.049 -15.553 1 37.85 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . B 2 10.982 -16.059 -14.499 1 35.75 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . B 2 9.913 -16.254 -16.794 1 51.13 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . B 2 12.4 -13.395 -16.625 1 40.47 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . B 2 11.179 -12.581 -16.984 1 38.79 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . B 2 13.593 -13.396 -17.553 1 42.73 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . B 2 11.962 -14.933 -16.432 1 55.27 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . B 2 11.963 -12.242 -14.07 1 40.35 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . B 2 11.618 -13.237 -12.989 1 39.23 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . B 2 10.861 -11.512 -14.798 1 39.68 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . B 2 12.91 -12.978 -15.15 1 41.38 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . B 2 12.963 -11.144 -13.444 1 33.48 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . B 2 13.693 -10.266 -14.297 1 25.87 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . B 2 14.763 -9.524 -13.502 1 26.43 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . B 2 15.75 -9.041 -14.422 1 26.8 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . B 2 14.17 -8.293 -12.828 1 24.61 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . B 2 14.97 -7.982 -11.683 1 22.83 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . B 2 14.397 -7.196 -13.847 1 23.39 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . B 2 14.521 -5.919 -13.203 1 20.98 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . B 2 15.713 -7.615 -14.483 1 23.59 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . B 2 15.772 -7.127 -15.878 1 23.83 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . B 2 15.014 -7.558 -16.904 1 19.94 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . B 2 15.321 -6.885 -18.042 1 21.66 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . B 2 16.292 -6.001 -17.742 1 22.62 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . B 2 17.068 -4.978 -18.478 1 23.93 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . B 2 16.855 -4.77 -19.799 1 27.61 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . B 2 17.992 -4.267 -17.79 1 24.69 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . B 2 18.205 -4.469 -16.476 1 24 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . B 2 17.536 -5.38 -15.745 1 23.5 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . B 2 16.585 -6.162 -16.312 1 23.06 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #