data_3TWF # _model_server_result.job_id YoJl3T086G7DEdxLCS3Row _model_server_result.datetime_utc '2025-03-04 15:35:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3twf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":30}' # _entry.id 3TWF # _exptl.entry_id 3TWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TWF _cell.length_a 48.349 _cell.length_b 48.349 _cell.length_c 39.748 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 96.698 48.349 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 9 A GLU 9 1_555 A N 6FL 10 A 6FL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C 6FL 10 A 6FL 10 1_555 A N GLU 11 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale3 A C ARG 16 A ARG 16 1_555 A N 6FL 17 A 6FL 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C 6FL 17 A 6FL 17 1_555 A N ARG 18 A ARG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale5 A C LYS 23 A LYS 23 1_555 A N 6FL 24 A 6FL 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale6 A C 6FL 24 A 6FL 24 1_555 A N ARG 25 A ARG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale7 B C GLU 9 B GLU 9 1_555 B N 6FL 10 B 6FL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale8 B C 6FL 10 B 6FL 10 1_555 B N GLU 11 B GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale9 B C ARG 16 B ARG 16 1_555 B N 6FL 17 B 6FL 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale10 B C 6FL 17 B 6FL 17 1_555 B N ARG 18 B ARG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale11 B C LYS 23 B LYS 23 1_555 B N 6FL 24 B 6FL 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C 6FL 24 B 6FL 24 1_555 B N ARG 25 B ARG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? metalc ? metalc1 B OH TYR 7 B TYR 7 1_555 F NA NA . B NA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TWF _atom_sites.fract_transf_matrix[1][1] 0.020683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACE A 1 28 1 ACE ACE . D 3 PGE B 1 28 1 PGE PGE . E 3 PGE B 1 29 1 PGE PGE . F 4 NA B 1 30 1 NA NA . G 5 HOH A 1 29 4 HOH HOH . G 5 HOH A 2 30 5 HOH HOH . G 5 HOH A 3 31 8 HOH HOH . G 5 HOH A 4 32 9 HOH HOH . G 5 HOH A 5 33 11 HOH HOH . G 5 HOH A 6 34 13 HOH HOH . G 5 HOH A 7 35 14 HOH HOH . G 5 HOH A 8 36 16 HOH HOH . G 5 HOH A 9 37 17 HOH HOH . G 5 HOH A 10 38 18 HOH HOH . H 5 HOH B 1 31 1 HOH HOH . H 5 HOH B 2 32 2 HOH HOH . H 5 HOH B 3 33 3 HOH HOH . H 5 HOH B 4 34 6 HOH HOH . H 5 HOH B 5 35 7 HOH HOH . H 5 HOH B 6 36 10 HOH HOH . H 5 HOH B 7 37 12 HOH HOH . H 5 HOH B 8 38 15 HOH HOH . H 5 HOH B 9 39 19 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 52.107 _atom_site.Cartn_y 10.063 _atom_site.Cartn_z -22.825 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 30 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #