data_3TX7
#
_model_server_result.job_id            3w9tfYJsivTA9AR06J75UQ 
_model_server_result.datetime_utc      '2024-11-25 11:33:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tx7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":100}' 
#
_entry.id    3TX7 
#
_exptl.entry_id    3TX7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              746.991 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.96 
_cell.angle_gamma         90 
_cell.entry_id            3TX7 
_cell.length_a            49.824 
_cell.length_b            151.602 
_cell.length_c            76.131 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TX7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C40 H75 O10 P' 
_chem_comp.formula_weight    746.991 
_chem_comp.id                P6L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 P6L sing 235 n n 
C1 O12 P6L sing 236 n n 
C1 H11 P6L sing 237 n n 
C1 H12 P6L sing 238 n n 
C2 O3 P6L sing 239 n n 
C2 C50 P6L sing 240 n n 
C2 H2 P6L sing 241 n n 
O3 HO3 P6L sing 242 n n 
O4 C5 P6L sing 243 n n 
O4 C14 P6L sing 244 n n 
C5 C6 P6L sing 245 n n 
C5 C7 P6L sing 246 n n 
C5 H5 P6L sing 247 n n 
C6 O8 P6L sing 248 n n 
C6 H61 P6L sing 249 n n 
C6 H62 P6L sing 250 n n 
C7 O9 P6L sing 251 n n 
C7 H71 P6L sing 252 n n 
C7 H72 P6L sing 253 n n 
O8 C16 P6L sing 254 n n 
O9 P11 P6L sing 255 n n 
O10 P11 P6L doub 256 n n 
P11 O12 P6L sing 257 n n 
P11 O13 P6L sing 258 n n 
O13 H13 P6L sing 259 n n 
C14 O15 P6L doub 260 n n 
C14 C18 P6L sing 261 n n 
C16 O17 P6L doub 262 n n 
C16 C27 P6L sing 263 n n 
C18 C19 P6L sing 264 n n 
C18 H181 P6L sing 265 n n 
C18 H182 P6L sing 266 n n 
C19 C20 P6L sing 267 n n 
C19 H191 P6L sing 268 n n 
C19 H192 P6L sing 269 n n 
C20 C21 P6L sing 270 n n 
C20 H201 P6L sing 271 n n 
C20 H202 P6L sing 272 n n 
C21 C22 P6L sing 273 n n 
C21 H211 P6L sing 274 n n 
C21 H212 P6L sing 275 n n 
C22 C23 P6L doub 276 z n 
C22 H22 P6L sing 277 n n 
C23 C24 P6L sing 278 n n 
C23 H23 P6L sing 279 n n 
C24 C25 P6L sing 280 n n 
C24 H241 P6L sing 281 n n 
C24 H242 P6L sing 282 n n 
C25 C26 P6L sing 283 n n 
C25 H251 P6L sing 284 n n 
C25 H252 P6L sing 285 n n 
C26 C37 P6L sing 286 n n 
C26 H261 P6L sing 287 n n 
C26 H262 P6L sing 288 n n 
C27 C28 P6L sing 289 n n 
C27 H271 P6L sing 290 n n 
C27 H272 P6L sing 291 n n 
C28 C29 P6L sing 292 n n 
C28 H281 P6L sing 293 n n 
C28 H282 P6L sing 294 n n 
C29 C30 P6L sing 295 n n 
C29 H291 P6L sing 296 n n 
C29 H292 P6L sing 297 n n 
C30 C31 P6L sing 298 n n 
C30 H301 P6L sing 299 n n 
C30 H302 P6L sing 300 n n 
C31 C32 P6L sing 301 n n 
C31 H311 P6L sing 302 n n 
C31 H312 P6L sing 303 n n 
C32 C33 P6L sing 304 n n 
C32 H321 P6L sing 305 n n 
C32 H322 P6L sing 306 n n 
C33 C34 P6L doub 307 e n 
C33 H33 P6L sing 308 n n 
C34 C35 P6L sing 309 n n 
C34 H34 P6L sing 310 n n 
C35 C36 P6L sing 311 n n 
C35 H351 P6L sing 312 n n 
C35 H352 P6L sing 313 n n 
C36 C38 P6L sing 314 n n 
C36 H361 P6L sing 315 n n 
C36 H362 P6L sing 316 n n 
C37 C45 P6L sing 317 n n 
C37 H371 P6L sing 318 n n 
C37 H372 P6L sing 319 n n 
C38 C39 P6L sing 320 n n 
C38 H381 P6L sing 321 n n 
C38 H382 P6L sing 322 n n 
C39 C40 P6L sing 323 n n 
C39 H391 P6L sing 324 n n 
C39 H392 P6L sing 325 n n 
C40 C41 P6L sing 326 n n 
C40 H401 P6L sing 327 n n 
C40 H402 P6L sing 328 n n 
C41 C42 P6L sing 329 n n 
C41 H411 P6L sing 330 n n 
C41 H412 P6L sing 331 n n 
C42 C43 P6L sing 332 n n 
C42 H421 P6L sing 333 n n 
C42 H422 P6L sing 334 n n 
C43 C44 P6L sing 335 n n 
C43 H431 P6L sing 336 n n 
C43 H432 P6L sing 337 n n 
C44 H441 P6L sing 338 n n 
C44 H442 P6L sing 339 n n 
C44 H443 P6L sing 340 n n 
C45 C46 P6L sing 341 n n 
C45 H451 P6L sing 342 n n 
C45 H452 P6L sing 343 n n 
C46 C47 P6L sing 344 n n 
C46 H461 P6L sing 345 n n 
C46 H462 P6L sing 346 n n 
C47 C48 P6L sing 347 n n 
C47 H471 P6L sing 348 n n 
C47 H472 P6L sing 349 n n 
C48 C49 P6L sing 350 n n 
C48 H481 P6L sing 351 n n 
C48 H482 P6L sing 352 n n 
C49 H491 P6L sing 353 n n 
C49 H492 P6L sing 354 n n 
C49 H493 P6L sing 355 n n 
C50 O51 P6L sing 356 n n 
C50 H501 P6L sing 357 n n 
C50 H502 P6L sing 358 n n 
O51 H51 P6L sing 359 n n 
#
_atom_sites.entry_id                     3TX7 
_atom_sites.fract_transf_matrix[1][1]    0.020071 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00245 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006596 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013233 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           P6L 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      100 
_pdbx_nonpoly_scheme.auth_seq_num     100 
_pdbx_nonpoly_scheme.pdb_mon_id       P6L 
_pdbx_nonpoly_scheme.auth_mon_id      P6L 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 P6L . . . C 3 -2.27 -3.669 -44.916 1 99.83 ? C1 P6L 100 B 1 
HETATM 2 C C2 P6L . . . C 3 -2.148 -2.217 -44.455 1 101.92 ? C2 P6L 100 B 1 
HETATM 3 O O3 P6L . . . C 3 -2.802 -1.888 -43.262 1 88.22 ? O3 P6L 100 B 1 
HETATM 4 O O4 P6L . . . C 3 -6.316 -9.618 -42.927 1 86.84 ? O4 P6L 100 B 1 
HETATM 5 C C5 P6L . . . C 3 -4.968 -9.181 -43.058 1 91.43 ? C5 P6L 100 B 1 
HETATM 6 C C6 P6L . . . C 3 -3.981 -10.379 -42.999 1 93.19 ? C6 P6L 100 B 1 
HETATM 7 C C7 P6L . . . C 3 -4.69 -8.248 -44.271 1 77.57 ? C7 P6L 100 B 1 
HETATM 8 O O8 P6L . . . C 3 -4.439 -11.493 -42.243 1 93.11 ? O8 P6L 100 B 1 
HETATM 9 O O9 P6L . . . C 3 -3.875 -7.171 -43.854 1 81.87 ? O9 P6L 100 B 1 
HETATM 10 O O10 P6L . . . C 3 -5.279 -5.202 -44.943 1 76.37 ? O10 P6L 100 B 1 
HETATM 11 P P11 P6L . . . C 3 -3.775 -5.812 -44.784 1 85.81 ? P11 P6L 100 B 1 
HETATM 12 O O12 P6L . . . C 3 -2.802 -4.672 -44.071 1 83.71 ? O12 P6L 100 B 1 
HETATM 13 O O13 P6L . . . C 3 -3.25 -6.211 -46.086 1 93.77 ? O13 P6L 100 B 1 
HETATM 14 C C14 P6L . . . C 3 -7.331 -8.805 -42.393 1 78.32 ? C14 P6L 100 B 1 
HETATM 15 O O15 P6L . . . C 3 -8.514 -9.571 -42.253 1 80.93 ? O15 P6L 100 B 1 
HETATM 16 C C16 P6L . . . C 3 -3.699 -11.82 -41.066 1 89.98 ? C16 P6L 100 B 1 
HETATM 17 O O17 P6L . . . C 3 -2.992 -10.693 -40.579 1 94.15 ? O17 P6L 100 B 1 
HETATM 18 C C18 P6L . . . C 3 -7.006 -8.071 -41.029 1 81.79 ? C18 P6L 100 B 1 
HETATM 19 C C19 P6L . . . C 3 -8.245 -7.765 -40.133 1 76.82 ? C19 P6L 100 B 1 
HETATM 20 C C20 P6L . . . C 3 -9.441 -6.979 -40.788 1 66.94 ? C20 P6L 100 B 1 
HETATM 21 C C21 P6L . . . C 3 -10.888 -7.056 -40.167 1 67.8 ? C21 P6L 100 B 1 
HETATM 22 C C22 P6L . . . C 3 -12.06 -6.834 -41.184 1 69.64 ? C22 P6L 100 B 1 
HETATM 23 C C23 P6L . . . C 3 -13.185 -5.807 -40.909 1 64.13 ? C23 P6L 100 B 1 
HETATM 24 C C24 P6L . . . C 3 -12.901 -4.533 -40.064 1 67.5 ? C24 P6L 100 B 1 
HETATM 25 C C25 P6L . . . C 3 -11.581 -3.734 -40.311 1 70.36 ? C25 P6L 100 B 1 
HETATM 26 C C26 P6L . . . C 3 -11.239 -2.535 -39.38 1 69.83 ? C26 P6L 100 B 1 
HETATM 27 C C27 P6L . . . C 3 -4.464 -12.675 -39.999 1 87.71 ? C27 P6L 100 B 1 
HETATM 28 C C28 P6L . . . C 3 -5.927 -12.322 -39.585 1 87.61 ? C28 P6L 100 B 1 
HETATM 29 C C29 P6L . . . C 3 -6.156 -11.083 -38.662 1 91.66 ? C29 P6L 100 B 1 
HETATM 30 C C30 P6L . . . C 3 -7.579 -10.794 -38.075 1 84.11 ? C30 P6L 100 B 1 
HETATM 31 C C31 P6L . . . C 3 -7.821 -9.424 -37.385 1 73.51 ? C31 P6L 100 B 1 
HETATM 32 C C32 P6L . . . C 3 -8.477 -9.457 -35.997 1 85.24 ? C32 P6L 100 B 1 
HETATM 33 C C33 P6L . . . C 3 -9.458 -8.306 -35.601 1 78.42 ? C33 P6L 100 B 1 
HETATM 34 C C34 P6L . . . C 3 -10.844 -8.336 -36.327 1 79.67 ? C34 P6L 100 B 1 
HETATM 35 C C35 P6L . . . C 3 -12.077 -7.88 -35.482 1 68.8 ? C35 P6L 100 B 1 
HETATM 36 C C36 P6L . . . C 3 -11.862 -6.555 -34.724 1 69.58 ? C36 P6L 100 B 1 
HETATM 37 C C37 P6L . . . C 3 -10.554 -2.799 -38.027 1 74.59 ? C37 P6L 100 B 1 
HETATM 38 C C38 P6L . . . C 3 -13.148 -5.758 -34.394 1 69.68 ? C38 P6L 100 B 1 
HETATM 39 C C39 P6L . . . C 3 -13.924 -5.162 -35.582 1 57.55 ? C39 P6L 100 B 1 
HETATM 40 C C40 P6L . . . C 3 -13.436 -3.789 -36.071 1 64.72 ? C40 P6L 100 B 1 
HETATM 41 C C41 P6L . . . C 3 -14.452 -2.631 -36.022 1 63.55 ? C41 P6L 100 B 1 
HETATM 42 C C42 P6L . . . C 3 -13.945 -1.297 -36.599 1 64.36 ? C42 P6L 100 B 1 
HETATM 43 C C43 P6L . . . C 3 -14.781 -0.645 -37.708 1 73.1 ? C43 P6L 100 B 1 
HETATM 44 C C44 P6L . . . C 3 -14.602 -1.145 -39.169 1 69.39 ? C44 P6L 100 B 1 
HETATM 45 C C45 P6L . . . C 3 -9.397 -3.792 -37.906 1 70.17 ? C45 P6L 100 B 1 
HETATM 46 C C46 P6L . . . C 3 -8.595 -3.793 -36.565 1 74 ? C46 P6L 100 B 1 
HETATM 47 C C47 P6L . . . C 3 -9.384 -3.724 -35.26 1 75.76 ? C47 P6L 100 B 1 
HETATM 48 C C48 P6L . . . C 3 -8.625 -3.592 -33.933 1 76.91 ? C48 P6L 100 B 1 
HETATM 49 C C49 P6L . . . C 3 -8.315 -4.897 -33.185 1 74.77 ? C49 P6L 100 B 1 
HETATM 50 C C50 P6L . . . C 3 -2.141 -1.155 -45.566 1 103.23 ? C50 P6L 100 B 1 
HETATM 51 O O51 P6L . . . C 3 -1.35 -0.008 -45.365 1 96.92 ? O51 P6L 100 B 1 
#
_model_server_stats.io_time_ms              84 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           51 
#