data_3TXG # _model_server_result.job_id VO62O4mLanO1u1au_iZAEg _model_server_result.datetime_utc '2024-11-16 18:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3txg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":134}' # _entry.id 3TXG # _exptl.entry_id 3TXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TXG _cell.length_a 78.081 _cell.length_b 78.081 _cell.length_c 37.107 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N ? 5 Z N N ? 5 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 J PT1 CPT . A CPT 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc2 A ND1 HIS 15 A HIS 15 1_555 K PT1 CPT . A CPT 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc3 A O SER 60 A SER 60 1_555 I NA NA . A NA 1138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc4 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 1138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc5 A OG SER 72 A SER 72 1_555 I NA NA . A NA 1138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc6 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 1138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc7 I NA NA . A NA 1138 1_555 BA O HOH . A HOH 2077 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 I NA NA . A NA 1138 1_555 BA O HOH . A HOH 2082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 93 n n S C1 DMS sing 94 n n S C2 DMS sing 95 n n C1 H11 DMS sing 96 n n C1 H12 DMS sing 97 n n C1 H13 DMS sing 98 n n C2 H21 DMS sing 99 n n C2 H22 DMS sing 100 n n C2 H23 DMS sing 101 n n # _atom_sites.entry_id 3TXG _atom_sites.fract_transf_matrix[1][1] 0.012807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 1130 1130 CL CL . C 2 CL A 1 1131 1131 CL CL . D 2 CL A 1 1132 1132 CL CL . E 2 CL A 1 1134 1134 CL CL . F 2 CL A 1 1135 1135 CL CL . G 2 CL A 1 1136 1136 CL CL . H 2 CL A 1 1137 1137 CL CL . I 3 NA A 1 1138 1138 NA NA . J 4 CPT A 1 130 1 CPT CPT . K 4 CPT A 1 131 1 CPT CPT . L 5 DMS A 1 132 1 DMS DMS . M 5 DMS A 1 133 1 DMS DMS . N 5 DMS A 1 134 1 DMS DMS . O 5 DMS A 1 135 1 DMS DMS . P 5 DMS A 1 136 1 DMS DMS . Q 5 DMS A 1 137 1 DMS DMS . R 5 DMS A 1 138 1 DMS DMS . S 5 DMS A 1 139 1 DMS DMS . T 5 DMS A 1 140 1 DMS DMS . U 5 DMS A 1 141 1 DMS DMS . V 5 DMS A 1 142 1 DMS DMS . W 5 DMS A 1 143 1 DMS DMS . X 5 DMS A 1 144 1 DMS DMS . Y 5 DMS A 1 145 1 DMS DMS . Z 5 DMS A 1 146 1 DMS DMS . AA 5 DMS A 1 147 1 DMS DMS . BA 6 HOH A 1 2001 2001 HOH HOH . BA 6 HOH A 2 2002 2002 HOH HOH . BA 6 HOH A 3 2003 2003 HOH HOH . BA 6 HOH A 4 2004 2004 HOH HOH . BA 6 HOH A 5 2005 2005 HOH HOH . BA 6 HOH A 6 2006 2006 HOH HOH . BA 6 HOH A 7 2007 2007 HOH HOH . BA 6 HOH A 8 2008 2008 HOH HOH . BA 6 HOH A 9 2009 2009 HOH HOH . BA 6 HOH A 10 2010 2010 HOH HOH . BA 6 HOH A 11 2012 2012 HOH HOH . BA 6 HOH A 12 2013 2013 HOH HOH . BA 6 HOH A 13 2014 2014 HOH HOH . BA 6 HOH A 14 2016 2016 HOH HOH . BA 6 HOH A 15 2021 2021 HOH HOH . BA 6 HOH A 16 2022 2022 HOH HOH . BA 6 HOH A 17 2024 2024 HOH HOH . BA 6 HOH A 18 2027 2027 HOH HOH . BA 6 HOH A 19 2028 2028 HOH HOH . BA 6 HOH A 20 2030 2030 HOH HOH . BA 6 HOH A 21 2031 2031 HOH HOH . BA 6 HOH A 22 2032 2032 HOH HOH . BA 6 HOH A 23 2033 2033 HOH HOH . BA 6 HOH A 24 2035 2035 HOH HOH . BA 6 HOH A 25 2037 2037 HOH HOH . BA 6 HOH A 26 2038 2038 HOH HOH . BA 6 HOH A 27 2039 2039 HOH HOH . BA 6 HOH A 28 2043 2043 HOH HOH . BA 6 HOH A 29 2044 2044 HOH HOH . BA 6 HOH A 30 2045 2045 HOH HOH . BA 6 HOH A 31 2046 2046 HOH HOH . BA 6 HOH A 32 2047 2047 HOH HOH . BA 6 HOH A 33 2048 2048 HOH HOH . BA 6 HOH A 34 2049 2049 HOH HOH . BA 6 HOH A 35 2055 2055 HOH HOH . BA 6 HOH A 36 2057 2057 HOH HOH . BA 6 HOH A 37 2058 2058 HOH HOH . BA 6 HOH A 38 2062 2062 HOH HOH . BA 6 HOH A 39 2063 2063 HOH HOH . BA 6 HOH A 40 2064 2064 HOH HOH . BA 6 HOH A 41 2065 2065 HOH HOH . BA 6 HOH A 42 2066 2066 HOH HOH . BA 6 HOH A 43 2067 2067 HOH HOH . BA 6 HOH A 44 2069 2069 HOH HOH . BA 6 HOH A 45 2071 2071 HOH HOH . BA 6 HOH A 46 2074 2074 HOH HOH . BA 6 HOH A 47 2075 2075 HOH HOH . BA 6 HOH A 48 2076 2076 HOH HOH . BA 6 HOH A 49 2077 2077 HOH HOH . BA 6 HOH A 50 2079 2079 HOH HOH . BA 6 HOH A 51 2081 2081 HOH HOH . BA 6 HOH A 52 2082 2082 HOH HOH . BA 6 HOH A 53 2083 2083 HOH HOH . BA 6 HOH A 54 2085 2085 HOH HOH . BA 6 HOH A 55 2086 2086 HOH HOH . BA 6 HOH A 56 2087 2087 HOH HOH . BA 6 HOH A 57 2090 2090 HOH HOH . BA 6 HOH A 58 2091 2091 HOH HOH . BA 6 HOH A 59 2092 2092 HOH HOH . BA 6 HOH A 60 2093 2093 HOH HOH . BA 6 HOH A 61 2094 2094 HOH HOH . BA 6 HOH A 62 2095 2095 HOH HOH . BA 6 HOH A 63 2096 2096 HOH HOH . BA 6 HOH A 64 2097 2097 HOH HOH . BA 6 HOH A 65 2098 2098 HOH HOH . BA 6 HOH A 66 2099 2099 HOH HOH . BA 6 HOH A 67 2100 2100 HOH HOH . BA 6 HOH A 68 2101 2101 HOH HOH . BA 6 HOH A 69 2102 2102 HOH HOH . BA 6 HOH A 70 2103 2103 HOH HOH . BA 6 HOH A 71 2104 2104 HOH HOH . BA 6 HOH A 72 2108 2108 HOH HOH . BA 6 HOH A 73 2109 2109 HOH HOH . BA 6 HOH A 74 2110 2110 HOH HOH . BA 6 HOH A 75 2111 2111 HOH HOH . BA 6 HOH A 76 2112 2112 HOH HOH . BA 6 HOH A 77 2113 2113 HOH HOH . BA 6 HOH A 78 2114 2114 HOH HOH . BA 6 HOH A 79 2115 2115 HOH HOH . BA 6 HOH A 80 2116 2116 HOH HOH . BA 6 HOH A 81 2117 2117 HOH HOH . BA 6 HOH A 82 2118 2118 HOH HOH . BA 6 HOH A 83 2119 2119 HOH HOH . BA 6 HOH A 84 2120 2120 HOH HOH . BA 6 HOH A 85 2121 2121 HOH HOH . BA 6 HOH A 86 2122 2122 HOH HOH . BA 6 HOH A 87 2123 2123 HOH HOH . BA 6 HOH A 88 2124 2124 HOH HOH . BA 6 HOH A 89 2127 2127 HOH HOH . BA 6 HOH A 90 2128 2128 HOH HOH . BA 6 HOH A 91 2129 2129 HOH HOH . BA 6 HOH A 92 2130 2130 HOH HOH . BA 6 HOH A 93 2131 2131 HOH HOH . BA 6 HOH A 94 2133 2133 HOH HOH . BA 6 HOH A 95 2134 2134 HOH HOH . BA 6 HOH A 96 2135 2135 HOH HOH . BA 6 HOH A 97 2138 2138 HOH HOH . BA 6 HOH A 98 2139 2139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . N 5 -28.053 -3.861 -24.485 1 61.33 ? S DMS 134 A 1 HETATM 2 O O DMS . . . N 5 -28.385 -4.056 -22.739 1 60.57 ? O DMS 134 A 1 HETATM 3 C C1 DMS . . . N 5 -28.939 -2.393 -25.081 1 60.5 ? C1 DMS 134 A 1 HETATM 4 C C2 DMS . . . N 5 -26.357 -3.343 -24.851 1 60.6 ? C2 DMS 134 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 4 #