data_3TXM # _model_server_result.job_id H5HumifQVau_CKt8gfB16w _model_server_result.datetime_utc '2025-03-25 15:20:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3txm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2}' # _entry.id 3TXM # _exptl.entry_id 3TXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.25 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GADOLINIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TXM _cell.length_a 161.251 _cell.length_b 161.251 _cell.length_c 42.08 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B GD GD3 . A GD3 1 1_555 A OD1 ASP 237 A ASP 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.409 ? metalc ? metalc2 B GD GD3 . A GD3 1 1_555 A OD1 ASP 238 A ASP 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc3 B GD GD3 . A GD3 1 1_555 A OD2 ASP 238 A ASP 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc4 C GD GD3 . A GD3 2 1_555 A OE2 GLU 206 A GLU 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc5 C GD GD3 . A GD3 2 1_555 A OE1 GLU 206 A GLU 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc6 C GD GD3 . A GD3 2 1_555 A OE1 GLU 209 A GLU 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.292 ? metalc ? metalc7 D GD GD3 . A GD3 3 1_555 A OE1 GLU 354 A GLU 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc8 E GD GD3 . A GD3 4 1_555 A OE2 GLU 280 A GLU 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc9 E GD GD3 . A GD3 4 1_555 A OE1 GLU 280 A GLU 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.249 ? # _chem_comp.formula 'Gd 3' _chem_comp.formula_weight 157.25 _chem_comp.id GD3 _chem_comp.mon_nstd_flag . _chem_comp.name 'GADOLINIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TXM _atom_sites.fract_transf_matrix[1][1] 0.006202 _atom_sites.fract_transf_matrix[1][2] 0.00358 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GD3 A 1 1 1 GD3 GD3 . C 2 GD3 A 1 2 2 GD3 GD3 . D 2 GD3 A 1 3 3 GD3 GD3 . E 2 GD3 A 1 4 4 GD3 GD3 . F 3 SO4 A 1 423 1 SO4 SO4 . G 3 SO4 A 1 424 2 SO4 SO4 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol GD _atom_site.label_atom_id GD _atom_site.label_comp_id GD3 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -24.275 _atom_site.Cartn_y 142.619 _atom_site.Cartn_z -2.121 _atom_site.occupancy 0.34 _atom_site.B_iso_or_equiv 136.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id GD _atom_site.auth_comp_id GD3 _atom_site.auth_seq_id 2 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #