data_3TXO # _model_server_result.job_id mATCllTgrqXvN0lRsNf18w _model_server_result.datetime_utc '2024-11-22 06:33:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3txo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3TXO # _exptl.entry_id 3TXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 293.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-N~1~-[3-(pyridin-4-yl)-2,6-naphthyridin-1-yl]propane-1,2-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TXO _cell.length_a 113.533 _cell.length_b 56.861 _cell.length_c 63.367 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 56.861 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 325 A LEU 655 1_555 A N TPO 326 A TPO 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 326 A TPO 656 1_555 A N PRO 327 A PRO 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? # _chem_comp.formula 'C17 H19 N5' _chem_comp.formula_weight 293.366 _chem_comp.id 07U _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-N~1~-[3-(pyridin-4-yl)-2,6-naphthyridin-1-yl]propane-1,2-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C6 07U sing 1 n n C14 C6 07U sing 2 n n C10 C6 07U sing 3 n n C6 C3 07U sing 4 n n C3 N1 07U sing 5 n n N1 C18 07U sing 6 n n C18 N19 07U doub 7 n y C18 C31 07U sing 8 n y N19 C20 07U sing 9 n y C29 C31 07U doub 10 n y C29 C27 07U sing 11 n y C31 C23 07U sing 12 n y C40 C38 07U doub 13 n y C40 C32 07U sing 14 n y C27 N26 07U doub 15 n y C20 C32 07U sing 16 n n C20 C21 07U doub 17 n y C38 N37 07U sing 18 n y C32 C33 07U doub 19 n y C23 C21 07U sing 20 n y C23 C24 07U doub 21 n y N37 C35 07U doub 22 n y C33 C35 07U sing 23 n y N26 C24 07U sing 24 n y N1 H1 07U sing 25 n n C10 H2 07U sing 26 n n C10 H3 07U sing 27 n n C10 H4 07U sing 28 n n C21 H5 07U sing 29 n n C24 H6 07U sing 30 n n C3 H7 07U sing 31 n n C3 H8 07U sing 32 n n N7 H9 07U sing 33 n n N7 H10 07U sing 34 n n C14 H12 07U sing 35 n n C14 H13 07U sing 36 n n C14 H14 07U sing 37 n n C27 H15 07U sing 38 n n C29 H16 07U sing 39 n n C33 H17 07U sing 40 n n C35 H18 07U sing 41 n n C38 H19 07U sing 42 n n C40 H20 07U sing 43 n n # _atom_sites.entry_id 3TXO _atom_sites.fract_transf_matrix[1][1] 0.008808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 07U A 1 1 1 07U 07U . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 16 16 HOH HOH . C 3 HOH A 15 17 17 HOH HOH . C 3 HOH A 16 18 18 HOH HOH . C 3 HOH A 17 19 19 HOH HOH . C 3 HOH A 18 20 20 HOH HOH . C 3 HOH A 19 21 21 HOH HOH . C 3 HOH A 20 22 22 HOH HOH . C 3 HOH A 21 23 23 HOH HOH . C 3 HOH A 22 24 24 HOH HOH . C 3 HOH A 23 25 25 HOH HOH . C 3 HOH A 24 26 26 HOH HOH . C 3 HOH A 25 27 27 HOH HOH . C 3 HOH A 26 28 28 HOH HOH . C 3 HOH A 27 29 29 HOH HOH . C 3 HOH A 28 30 30 HOH HOH . C 3 HOH A 29 31 31 HOH HOH . C 3 HOH A 30 32 32 HOH HOH . C 3 HOH A 31 33 33 HOH HOH . C 3 HOH A 32 34 34 HOH HOH . C 3 HOH A 33 35 35 HOH HOH . C 3 HOH A 34 36 36 HOH HOH . C 3 HOH A 35 37 37 HOH HOH . C 3 HOH A 36 38 38 HOH HOH . C 3 HOH A 37 39 39 HOH HOH . C 3 HOH A 38 40 40 HOH HOH . C 3 HOH A 39 41 41 HOH HOH . C 3 HOH A 40 42 42 HOH HOH . C 3 HOH A 41 43 43 HOH HOH . C 3 HOH A 42 44 44 HOH HOH . C 3 HOH A 43 45 45 HOH HOH . C 3 HOH A 44 46 46 HOH HOH . C 3 HOH A 45 47 47 HOH HOH . C 3 HOH A 46 48 48 HOH HOH . C 3 HOH A 47 49 49 HOH HOH . C 3 HOH A 48 50 50 HOH HOH . C 3 HOH A 49 51 51 HOH HOH . C 3 HOH A 50 52 52 HOH HOH . C 3 HOH A 51 53 53 HOH HOH . C 3 HOH A 52 54 54 HOH HOH . C 3 HOH A 53 55 55 HOH HOH . C 3 HOH A 54 56 56 HOH HOH . C 3 HOH A 55 57 57 HOH HOH . C 3 HOH A 56 59 59 HOH HOH . C 3 HOH A 57 61 61 HOH HOH . C 3 HOH A 58 62 62 HOH HOH . C 3 HOH A 59 63 63 HOH HOH . C 3 HOH A 60 64 64 HOH HOH . C 3 HOH A 61 65 65 HOH HOH . C 3 HOH A 62 66 66 HOH HOH . C 3 HOH A 63 68 68 HOH HOH . C 3 HOH A 64 69 69 HOH HOH . C 3 HOH A 65 70 70 HOH HOH . C 3 HOH A 66 71 71 HOH HOH . C 3 HOH A 67 72 72 HOH HOH . C 3 HOH A 68 73 73 HOH HOH . C 3 HOH A 69 74 74 HOH HOH . C 3 HOH A 70 75 75 HOH HOH . C 3 HOH A 71 76 76 HOH HOH . C 3 HOH A 72 77 77 HOH HOH . C 3 HOH A 73 78 78 HOH HOH . C 3 HOH A 74 79 79 HOH HOH . C 3 HOH A 75 80 80 HOH HOH . C 3 HOH A 76 81 81 HOH HOH . C 3 HOH A 77 82 82 HOH HOH . C 3 HOH A 78 83 83 HOH HOH . C 3 HOH A 79 85 85 HOH HOH . C 3 HOH A 80 87 87 HOH HOH . C 3 HOH A 81 89 89 HOH HOH . C 3 HOH A 82 90 90 HOH HOH . C 3 HOH A 83 91 91 HOH HOH . C 3 HOH A 84 92 92 HOH HOH . C 3 HOH A 85 93 93 HOH HOH . C 3 HOH A 86 94 94 HOH HOH . C 3 HOH A 87 95 95 HOH HOH . C 3 HOH A 88 96 96 HOH HOH . C 3 HOH A 89 98 98 HOH HOH . C 3 HOH A 90 99 99 HOH HOH . C 3 HOH A 91 100 100 HOH HOH . C 3 HOH A 92 101 101 HOH HOH . C 3 HOH A 93 102 102 HOH HOH . C 3 HOH A 94 104 104 HOH HOH . C 3 HOH A 95 105 105 HOH HOH . C 3 HOH A 96 106 106 HOH HOH . C 3 HOH A 97 108 108 HOH HOH . C 3 HOH A 98 109 109 HOH HOH . C 3 HOH A 99 110 110 HOH HOH . C 3 HOH A 100 111 111 HOH HOH . C 3 HOH A 101 113 113 HOH HOH . C 3 HOH A 102 115 115 HOH HOH . C 3 HOH A 103 116 116 HOH HOH . C 3 HOH A 104 117 117 HOH HOH . C 3 HOH A 105 119 119 HOH HOH . C 3 HOH A 106 120 120 HOH HOH . C 3 HOH A 107 122 122 HOH HOH . C 3 HOH A 108 123 123 HOH HOH . C 3 HOH A 109 124 124 HOH HOH . C 3 HOH A 110 125 125 HOH HOH . C 3 HOH A 111 126 126 HOH HOH . C 3 HOH A 112 128 128 HOH HOH . C 3 HOH A 113 129 129 HOH HOH . C 3 HOH A 114 130 130 HOH HOH . C 3 HOH A 115 131 131 HOH HOH . C 3 HOH A 116 133 133 HOH HOH . C 3 HOH A 117 134 134 HOH HOH . C 3 HOH A 118 136 136 HOH HOH . C 3 HOH A 119 137 137 HOH HOH . C 3 HOH A 120 139 139 HOH HOH . C 3 HOH A 121 140 140 HOH HOH . C 3 HOH A 122 141 141 HOH HOH . C 3 HOH A 123 142 142 HOH HOH . C 3 HOH A 124 143 143 HOH HOH . C 3 HOH A 125 146 146 HOH HOH . C 3 HOH A 126 147 147 HOH HOH . C 3 HOH A 127 148 148 HOH HOH . C 3 HOH A 128 149 149 HOH HOH . C 3 HOH A 129 152 152 HOH HOH . C 3 HOH A 130 154 154 HOH HOH . C 3 HOH A 131 155 155 HOH HOH . C 3 HOH A 132 156 156 HOH HOH . C 3 HOH A 133 157 157 HOH HOH . C 3 HOH A 134 158 158 HOH HOH . C 3 HOH A 135 161 161 HOH HOH . C 3 HOH A 136 162 162 HOH HOH . C 3 HOH A 137 165 165 HOH HOH . C 3 HOH A 138 166 166 HOH HOH . C 3 HOH A 139 684 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 07U . . . B 2 21.074 13.725 16.095 1 37.7 ? N1 07U 1 A 1 HETATM 2 C C6 07U . . . B 2 22.453 12.845 14.257 1 30.45 ? C6 07U 1 A 1 HETATM 3 C C10 07U . . . B 2 23.856 12.222 13.978 1 30.93 ? C10 07U 1 A 1 HETATM 4 C C20 07U . . . B 2 19.514 10.823 17.492 1 32.63 ? C20 07U 1 A 1 HETATM 5 C C21 07U . . . B 2 18.258 11.321 17.923 1 29.96 ? C21 07U 1 A 1 HETATM 6 C C24 07U . . . B 2 16.696 13.165 18.13 1 35.82 ? C24 07U 1 A 1 HETATM 7 C C3 07U . . . B 2 22.426 13.279 15.768 1 31.68 ? C3 07U 1 A 1 HETATM 8 N N7 07U . . . B 2 22.24 13.979 13.355 1 33.85 ? N7 07U 1 A 1 HETATM 9 C C14 07U . . . B 2 21.342 11.818 13.963 1 31.51 ? C14 07U 1 A 1 HETATM 10 C C18 07U . . . B 2 20.104 12.973 16.672 1 36.45 ? C18 07U 1 A 1 HETATM 11 N N19 07U . . . B 2 20.382 11.658 16.889 1 36.23 ? N19 07U 1 A 1 HETATM 12 C C23 07U . . . B 2 17.937 12.652 17.687 1 33.39 ? C23 07U 1 A 1 HETATM 13 N N26 07U . . . B 2 16.41 14.482 17.965 1 32.27 ? N26 07U 1 A 1 HETATM 14 C C27 07U . . . B 2 17.288 15.33 17.377 1 33.98 ? C27 07U 1 A 1 HETATM 15 C C29 07U . . . B 2 18.523 14.864 16.904 1 34.67 ? C29 07U 1 A 1 HETATM 16 C C31 07U . . . B 2 18.862 13.511 17.059 1 33.74 ? C31 07U 1 A 1 HETATM 17 C C32 07U . . . B 2 19.889 9.376 17.613 1 33.18 ? C32 07U 1 A 1 HETATM 18 C C33 07U . . . B 2 18.889 8.411 17.945 1 29.19 ? C33 07U 1 A 1 HETATM 19 C C35 07U . . . B 2 19.265 7.067 18.054 1 30.4 ? C35 07U 1 A 1 HETATM 20 N N37 07U . . . B 2 20.551 6.688 17.844 1 28.96 ? N37 07U 1 A 1 HETATM 21 C C38 07U . . . B 2 21.521 7.563 17.5 1 30.65 ? C38 07U 1 A 1 HETATM 22 C C40 07U . . . B 2 21.217 8.938 17.367 1 34.31 ? C40 07U 1 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #