data_3TY0 # _model_server_result.job_id KXtPwb3vJx-f3KAy8eGGwA _model_server_result.datetime_utc '2024-10-19 14:34:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ty0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3TY0 # _exptl.entry_id 3TY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-5-(3-{[3-(6-methoxy-1,2-benzoxazol-3-yl)-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl]methyl}phenyl)-5-methyl-1,3-oxazolidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.39 _cell.angle_gamma 90 _cell.entry_id 3TY0 _cell.length_a 92.51 _cell.length_b 61.448 _cell.length_c 119.914 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H20 N4 O6' _chem_comp.formula_weight 484.46 _chem_comp.id 082 _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-5-(3-{[3-(6-methoxy-1,2-benzoxazol-3-yl)-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl]methyl}phenyl)-5-methyl-1,3-oxazolidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C25 082 doub 1 n n N4 C25 082 sing 2 n n N4 C24 082 sing 3 n n C25 O4 082 sing 4 n n C21 C20 082 doub 5 n y C21 C22 082 sing 6 n y C24 O6 082 doub 7 n n C24 C23 082 sing 8 n n C20 C19 082 sing 9 n y C22 C17 082 doub 10 n y O4 C23 082 sing 11 n n C19 C23 082 sing 12 n n C19 C18 082 doub 13 n y C17 C18 082 sing 14 n y C17 C16 082 sing 15 n n C23 C26 082 sing 16 n n C16 N2 082 sing 17 n n O1 C9 082 doub 18 n n N2 C9 082 sing 19 n n N2 C7 082 sing 20 n n C9 N1 082 sing 21 n n C7 C13 082 doub 22 n y C7 C8 082 sing 23 n y C13 C10 082 sing 24 n y C2 C3 082 doub 25 n y C2 C1 082 sing 26 n y C3 C4 082 sing 27 n y N1 C8 082 sing 28 n n N1 C14 082 sing 29 n n C8 C12 082 doub 30 n y C1 C14 082 sing 31 n y C1 C6 082 doub 32 n y C10 C11 082 doub 33 n y C14 N3 082 doub 34 n y C4 O3 082 sing 35 n n C4 C5 082 doub 36 n y O3 C15 082 sing 37 n n C12 C11 082 sing 38 n y C6 C5 082 sing 39 n y C6 O2 082 sing 40 n y N3 O2 082 sing 41 n y C11 H1 082 sing 42 n n C10 H2 082 sing 43 n n C21 H3 082 sing 44 n n C2 H4 082 sing 45 n n C20 H5 082 sing 46 n n C22 H6 082 sing 47 n n C12 H7 082 sing 48 n n C13 H8 082 sing 49 n n C3 H9 082 sing 50 n n C18 H10 082 sing 51 n n C5 H11 082 sing 52 n n C26 H12 082 sing 53 n n C26 H13 082 sing 54 n n C26 H14 082 sing 55 n n C15 H15 082 sing 56 n n C15 H16 082 sing 57 n n C15 H17 082 sing 58 n n C16 H18 082 sing 59 n n C16 H19 082 sing 60 n n N4 H20 082 sing 61 n n # _atom_sites.entry_id 3TY0 _atom_sites.fract_transf_matrix[1][1] 0.01081 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002573 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 082 A 1 1 1 082 MRK . D 2 082 B 1 2 2 082 MRK . E 3 HOH A 1 2 2 HOH HOH . E 3 HOH A 2 5 5 HOH HOH . E 3 HOH A 3 7 7 HOH HOH . E 3 HOH A 4 8 8 HOH HOH . E 3 HOH A 5 11 11 HOH HOH . E 3 HOH A 6 14 14 HOH HOH . E 3 HOH A 7 15 15 HOH HOH . E 3 HOH A 8 16 16 HOH HOH . E 3 HOH A 9 18 18 HOH HOH . E 3 HOH A 10 21 21 HOH HOH . E 3 HOH A 11 22 22 HOH HOH . E 3 HOH A 12 24 24 HOH HOH . E 3 HOH A 13 27 27 HOH HOH . E 3 HOH A 14 28 28 HOH HOH . E 3 HOH A 15 29 29 HOH HOH . E 3 HOH A 16 30 30 HOH HOH . E 3 HOH A 17 32 32 HOH HOH . E 3 HOH A 18 33 33 HOH HOH . E 3 HOH A 19 34 34 HOH HOH . E 3 HOH A 20 35 35 HOH HOH . E 3 HOH A 21 36 36 HOH HOH . E 3 HOH A 22 40 40 HOH HOH . E 3 HOH A 23 41 41 HOH HOH . E 3 HOH A 24 42 42 HOH HOH . E 3 HOH A 25 46 46 HOH HOH . E 3 HOH A 26 47 47 HOH HOH . E 3 HOH A 27 51 51 HOH HOH . E 3 HOH A 28 54 54 HOH HOH . E 3 HOH A 29 57 57 HOH HOH . E 3 HOH A 30 58 58 HOH HOH . E 3 HOH A 31 60 60 HOH HOH . E 3 HOH A 32 62 62 HOH HOH . E 3 HOH A 33 70 70 HOH HOH . E 3 HOH A 34 72 72 HOH HOH . E 3 HOH A 35 77 77 HOH HOH . E 3 HOH A 36 78 78 HOH HOH . E 3 HOH A 37 79 79 HOH HOH . E 3 HOH A 38 81 81 HOH HOH . E 3 HOH A 39 82 82 HOH HOH . E 3 HOH A 40 84 84 HOH HOH . E 3 HOH A 41 86 86 HOH HOH . E 3 HOH A 42 87 87 HOH HOH . E 3 HOH A 43 88 88 HOH HOH . E 3 HOH A 44 90 90 HOH HOH . F 3 HOH B 1 1 1 HOH HOH . F 3 HOH B 2 3 3 HOH HOH . F 3 HOH B 3 4 4 HOH HOH . F 3 HOH B 4 6 6 HOH HOH . F 3 HOH B 5 9 9 HOH HOH . F 3 HOH B 6 10 10 HOH HOH . F 3 HOH B 7 12 12 HOH HOH . F 3 HOH B 8 13 13 HOH HOH . F 3 HOH B 9 17 17 HOH HOH . F 3 HOH B 10 19 19 HOH HOH . F 3 HOH B 11 20 20 HOH HOH . F 3 HOH B 12 23 23 HOH HOH . F 3 HOH B 13 25 25 HOH HOH . F 3 HOH B 14 26 26 HOH HOH . F 3 HOH B 15 31 31 HOH HOH . F 3 HOH B 16 37 37 HOH HOH . F 3 HOH B 17 38 38 HOH HOH . F 3 HOH B 18 39 39 HOH HOH . F 3 HOH B 19 43 43 HOH HOH . F 3 HOH B 20 44 44 HOH HOH . F 3 HOH B 21 45 45 HOH HOH . F 3 HOH B 22 48 48 HOH HOH . F 3 HOH B 23 49 49 HOH HOH . F 3 HOH B 24 50 50 HOH HOH . F 3 HOH B 25 52 52 HOH HOH . F 3 HOH B 26 53 53 HOH HOH . F 3 HOH B 27 55 55 HOH HOH . F 3 HOH B 28 56 56 HOH HOH . F 3 HOH B 29 59 59 HOH HOH . F 3 HOH B 30 61 61 HOH HOH . F 3 HOH B 31 63 63 HOH HOH . F 3 HOH B 32 64 64 HOH HOH . F 3 HOH B 33 65 65 HOH HOH . F 3 HOH B 34 66 66 HOH HOH . F 3 HOH B 35 67 67 HOH HOH . F 3 HOH B 36 68 68 HOH HOH . F 3 HOH B 37 69 69 HOH HOH . F 3 HOH B 38 71 71 HOH HOH . F 3 HOH B 39 73 73 HOH HOH . F 3 HOH B 40 74 74 HOH HOH . F 3 HOH B 41 75 75 HOH HOH . F 3 HOH B 42 76 76 HOH HOH . F 3 HOH B 43 80 80 HOH HOH . F 3 HOH B 44 83 83 HOH HOH . F 3 HOH B 45 85 85 HOH HOH . F 3 HOH B 46 89 89 HOH HOH . F 3 HOH B 47 91 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 082 . . . C 2 18.258 5.089 15.217 1 48.24 ? C11 082 1 A 1 HETATM 2 C C10 082 . . . C 2 19.046 5.201 14.088 1 47.46 ? C10 082 1 A 1 HETATM 3 C C21 082 . . . C 2 18.586 8.105 8.542 1 49.35 ? C21 082 1 A 1 HETATM 4 C C2 082 . . . C 2 12.409 3.226 13.06 1 69.14 ? C2 082 1 A 1 HETATM 5 C C20 082 . . . C 2 17.75 9.182 8.761 1 49.68 ? C20 082 1 A 1 HETATM 6 C C22 082 . . . C 2 18.261 6.855 9.027 1 49.41 ? C22 082 1 A 1 HETATM 7 C C12 082 . . . C 2 16.88 5.065 15.118 1 49.57 ? C12 082 1 A 1 HETATM 8 C C13 082 . . . C 2 18.494 5.295 12.824 1 46.6 ? C13 082 1 A 1 HETATM 9 C C3 082 . . . C 2 11.201 2.587 13.261 1 69.36 ? C3 082 1 A 1 HETATM 10 C C18 082 . . . C 2 16.258 7.761 9.941 1 50.81 ? C18 082 1 A 1 HETATM 11 C C5 082 . . . C 2 10.854 3.636 15.407 1 69.07 ? C5 082 1 A 1 HETATM 12 C C1 082 . . . C 2 12.841 4.093 14.054 1 67.26 ? C1 082 1 A 1 HETATM 13 C C19 082 . . . C 2 16.565 9.021 9.459 1 52.74 ? C19 082 1 A 1 HETATM 14 C C17 082 . . . C 2 17.091 6.677 9.736 1 50.05 ? C17 082 1 A 1 HETATM 15 C C8 082 . . . C 2 16.346 5.165 13.852 1 52.16 ? C8 082 1 A 1 HETATM 16 C C7 082 . . . C 2 17.125 5.275 12.739 1 49.64 ? C7 082 1 A 1 HETATM 17 C C6 082 . . . C 2 12.058 4.257 15.176 1 67.84 ? C6 082 1 A 1 HETATM 18 C C4 082 . . . C 2 10.447 2.789 14.397 1 70.5 ? C4 082 1 A 1 HETATM 19 C C14 082 . . . C 2 13.958 4.948 14.279 1 63.89 ? C14 082 1 A 1 HETATM 20 C C24 082 . . . C 2 14.564 10.029 8.689 1 59.81 ? C24 082 1 A 1 HETATM 21 C C25 082 . . . C 2 15.994 11.475 7.996 1 63.41 ? C25 082 1 A 1 HETATM 22 C C9 082 . . . C 2 14.959 5.296 12.034 1 53.02 ? C9 082 1 A 1 HETATM 23 C C23 082 . . . C 2 15.592 10.137 9.771 1 57.95 ? C23 082 1 A 1 HETATM 24 C C26 082 . . . C 2 15.061 10.208 11.176 1 57.94 ? C26 082 1 A 1 HETATM 25 C C15 082 . . . C 2 8.854 2.121 15.873 1 72.96 ? C15 082 1 A 1 HETATM 26 C C16 082 . . . C 2 16.74 5.324 10.257 1 50.08 ? C16 082 1 A 1 HETATM 27 N N3 082 . . . C 2 13.861 5.571 15.46 1 65.89 ? N3 082 1 A 1 HETATM 28 N N4 082 . . . C 2 14.931 10.761 7.649 1 62.28 ? N4 082 1 A 1 HETATM 29 N N1 082 . . . C 2 15.022 5.157 13.412 1 56.59 ? N1 082 1 A 1 HETATM 30 N N2 082 . . . C 2 16.281 5.356 11.626 1 51.49 ? N2 082 1 A 1 HETATM 31 O O6 082 . . . C 2 13.635 9.236 8.72 1 59.17 ? O6 082 1 A 1 HETATM 32 O O5 082 . . . C 2 16.539 12.333 7.321 1 65.66 ? O5 082 1 A 1 HETATM 33 O O1 082 . . . C 2 13.964 5.37 11.328 1 50.15 ? O1 082 1 A 1 HETATM 34 O O2 082 . . . C 2 12.67 5.129 16.023 1 67.15 ? O2 082 1 A 1 HETATM 35 O O4 082 . . . C 2 16.297 11.273 9.309 1 61.13 ? O4 082 1 A 1 HETATM 36 O O3 082 . . . C 2 9.243 2.108 14.501 1 72.77 ? O3 082 1 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 36 #