data_3TY7 # _model_server_result.job_id zbkrifURuIWbfIQtaEagHA _model_server_result.datetime_utc '2024-11-04 23:08:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ty7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":485}' # _entry.id 3TY7 # _exptl.entry_id 3TY7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TY7 _cell.length_a 173.448 _cell.length_b 173.448 _cell.length_c 96.569 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 4 A MSE 1 1_555 A N ARG 5 A ARG 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 4 A MSE 1 1_555 A N ARG 5 A ARG 2 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C GLN 108 A GLN 105 1_555 A N MSE 109 A MSE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 109 A MSE 106 1_555 A N GLY 110 A GLY 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C ARG 220 A ARG 217 1_555 A N MSE 221 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 221 A MSE 218 1_555 A N MSE 222 A MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C MSE 222 A MSE 219 1_555 A N SER 223 A SER 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 235 A MSE 232 1_555 A N GLU 236 A GLU 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C GLN 375 A GLN 372 1_555 A N MSE 376 A MSE 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 376 A MSE 373 1_555 A N THR 377 A THR 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C VAL 387 A VAL 384 1_555 A N MSE 388 A MSE 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C MSE 388 A MSE 385 1_555 A N SER 389 A SER 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale16 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale17 B C MSE 4 B MSE 1 1_555 B N ARG 5 B ARG 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 B C MSE 4 B MSE 1 1_555 B N ARG 5 B ARG 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 B C GLN 108 B GLN 105 1_555 B N MSE 109 B MSE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 B C MSE 109 B MSE 106 1_555 B N GLY 110 B GLY 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 B C ARG 220 B ARG 217 1_555 B N MSE 221 B MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 B C MSE 221 B MSE 218 1_555 B N MSE 222 B MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale23 B C MSE 222 B MSE 219 1_555 B N SER 223 B SER 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale24 B C ILE 234 B ILE 231 1_555 B N MSE 235 B MSE 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 B C MSE 235 B MSE 232 1_555 B N GLU 236 B GLU 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 B C GLN 375 B GLN 372 1_555 B N MSE 376 B MSE 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 B C MSE 376 B MSE 373 1_555 B N THR 377 B THR 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale28 B C VAL 387 B VAL 384 1_555 B N MSE 388 B MSE 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale29 B C MSE 388 B MSE 385 1_555 B N SER 389 B SER 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 B O ILE 28 B ILE 25 1_555 J MG MG . B MG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc2 B O GLU 94 B GLU 91 1_555 J MG MG . B MG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc3 B O GLU 177 B GLU 174 1_555 J MG MG . B MG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc4 J MG MG . B MG 484 1_555 N O HOH . B HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3TY7 _atom_sites.fract_transf_matrix[1][1] 0.005765 _atom_sites.fract_transf_matrix[1][2] 0.003329 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 481 481 GOL GOL . D 2 GOL A 1 482 482 GOL GOL . E 2 GOL A 1 483 483 GOL GOL . F 3 PEG A 1 484 484 PEG PEG . G 2 GOL B 1 481 481 GOL GOL . H 2 GOL B 1 482 482 GOL GOL . I 2 GOL B 1 483 483 GOL GOL . J 4 MG B 1 484 484 MG MG . K 2 GOL B 1 485 485 GOL GOL . L 3 PEG B 1 486 486 PEG PEG . M 5 HOH A 1 476 4 HOH HOH . M 5 HOH A 2 477 5 HOH HOH . M 5 HOH A 3 478 6 HOH HOH . M 5 HOH A 4 479 7 HOH HOH . M 5 HOH A 5 480 12 HOH HOH . M 5 HOH A 6 485 13 HOH HOH . M 5 HOH A 7 486 14 HOH HOH . M 5 HOH A 8 487 19 HOH HOH . M 5 HOH A 9 488 20 HOH HOH . M 5 HOH A 10 489 23 HOH HOH . M 5 HOH A 11 490 24 HOH HOH . M 5 HOH A 12 491 25 HOH HOH . M 5 HOH A 13 492 26 HOH HOH . M 5 HOH A 14 493 27 HOH HOH . M 5 HOH A 15 494 28 HOH HOH . M 5 HOH A 16 495 29 HOH HOH . M 5 HOH A 17 496 30 HOH HOH . M 5 HOH A 18 497 31 HOH HOH . M 5 HOH A 19 498 32 HOH HOH . M 5 HOH A 20 499 33 HOH HOH . M 5 HOH A 21 500 34 HOH HOH . M 5 HOH A 22 501 35 HOH HOH . M 5 HOH A 23 502 36 HOH HOH . M 5 HOH A 24 503 37 HOH HOH . M 5 HOH A 25 504 38 HOH HOH . M 5 HOH A 26 505 39 HOH HOH . M 5 HOH A 27 506 45 HOH HOH . M 5 HOH A 28 507 56 HOH HOH . M 5 HOH A 29 508 58 HOH HOH . M 5 HOH A 30 509 59 HOH HOH . M 5 HOH A 31 510 63 HOH HOH . M 5 HOH A 32 511 64 HOH HOH . M 5 HOH A 33 512 65 HOH HOH . M 5 HOH A 34 513 67 HOH HOH . M 5 HOH A 35 514 69 HOH HOH . M 5 HOH A 36 515 70 HOH HOH . M 5 HOH A 37 516 72 HOH HOH . M 5 HOH A 38 517 73 HOH HOH . M 5 HOH A 39 518 74 HOH HOH . M 5 HOH A 40 519 75 HOH HOH . M 5 HOH A 41 520 79 HOH HOH . M 5 HOH A 42 521 80 HOH HOH . M 5 HOH A 43 522 85 HOH HOH . M 5 HOH A 44 523 89 HOH HOH . M 5 HOH A 45 524 90 HOH HOH . M 5 HOH A 46 525 91 HOH HOH . M 5 HOH A 47 526 92 HOH HOH . M 5 HOH A 48 527 93 HOH HOH . M 5 HOH A 49 528 94 HOH HOH . M 5 HOH A 50 529 98 HOH HOH . M 5 HOH A 51 530 99 HOH HOH . M 5 HOH A 52 531 101 HOH HOH . M 5 HOH A 53 532 102 HOH HOH . M 5 HOH A 54 533 103 HOH HOH . M 5 HOH A 55 534 105 HOH HOH . M 5 HOH A 56 535 106 HOH HOH . M 5 HOH A 57 536 107 HOH HOH . M 5 HOH A 58 537 108 HOH HOH . M 5 HOH A 59 538 110 HOH HOH . M 5 HOH A 60 539 116 HOH HOH . M 5 HOH A 61 540 117 HOH HOH . M 5 HOH A 62 541 118 HOH HOH . M 5 HOH A 63 542 119 HOH HOH . M 5 HOH A 64 543 120 HOH HOH . M 5 HOH A 65 544 122 HOH HOH . M 5 HOH A 66 545 123 HOH HOH . M 5 HOH A 67 546 124 HOH HOH . M 5 HOH A 68 547 125 HOH HOH . M 5 HOH A 69 548 126 HOH HOH . M 5 HOH A 70 549 127 HOH HOH . M 5 HOH A 71 550 128 HOH HOH . M 5 HOH A 72 551 129 HOH HOH . M 5 HOH A 73 552 130 HOH HOH . M 5 HOH A 74 553 131 HOH HOH . M 5 HOH A 75 554 132 HOH HOH . M 5 HOH A 76 555 133 HOH HOH . M 5 HOH A 77 556 134 HOH HOH . M 5 HOH A 78 557 135 HOH HOH . M 5 HOH A 79 558 136 HOH HOH . M 5 HOH A 80 559 137 HOH HOH . M 5 HOH A 81 560 138 HOH HOH . M 5 HOH A 82 561 156 HOH HOH . M 5 HOH A 83 562 161 HOH HOH . M 5 HOH A 84 563 162 HOH HOH . M 5 HOH A 85 564 163 HOH HOH . N 5 HOH B 1 476 1 HOH HOH . N 5 HOH B 2 477 2 HOH HOH . N 5 HOH B 3 478 3 HOH HOH . N 5 HOH B 4 479 8 HOH HOH . N 5 HOH B 5 480 9 HOH HOH . N 5 HOH B 6 487 10 HOH HOH . N 5 HOH B 7 488 11 HOH HOH . N 5 HOH B 8 489 15 HOH HOH . N 5 HOH B 9 490 16 HOH HOH . N 5 HOH B 10 491 17 HOH HOH . N 5 HOH B 11 492 18 HOH HOH . N 5 HOH B 12 493 21 HOH HOH . N 5 HOH B 13 494 22 HOH HOH . N 5 HOH B 14 495 40 HOH HOH . N 5 HOH B 15 496 41 HOH HOH . N 5 HOH B 16 497 42 HOH HOH . N 5 HOH B 17 498 43 HOH HOH . N 5 HOH B 18 499 44 HOH HOH . N 5 HOH B 19 500 46 HOH HOH . N 5 HOH B 20 501 47 HOH HOH . N 5 HOH B 21 502 48 HOH HOH . N 5 HOH B 22 503 49 HOH HOH . N 5 HOH B 23 504 50 HOH HOH . N 5 HOH B 24 505 51 HOH HOH . N 5 HOH B 25 506 52 HOH HOH . N 5 HOH B 26 507 53 HOH HOH . N 5 HOH B 27 508 54 HOH HOH . N 5 HOH B 28 509 55 HOH HOH . N 5 HOH B 29 510 57 HOH HOH . N 5 HOH B 30 511 60 HOH HOH . N 5 HOH B 31 512 61 HOH HOH . N 5 HOH B 32 513 62 HOH HOH . N 5 HOH B 33 514 66 HOH HOH . N 5 HOH B 34 515 68 HOH HOH . N 5 HOH B 35 516 71 HOH HOH . N 5 HOH B 36 517 76 HOH HOH . N 5 HOH B 37 518 77 HOH HOH . N 5 HOH B 38 519 78 HOH HOH . N 5 HOH B 39 520 81 HOH HOH . N 5 HOH B 40 521 82 HOH HOH . N 5 HOH B 41 522 83 HOH HOH . N 5 HOH B 42 523 84 HOH HOH . N 5 HOH B 43 524 86 HOH HOH . N 5 HOH B 44 525 87 HOH HOH . N 5 HOH B 45 526 88 HOH HOH . N 5 HOH B 46 527 95 HOH HOH . N 5 HOH B 47 528 96 HOH HOH . N 5 HOH B 48 529 97 HOH HOH . N 5 HOH B 49 530 100 HOH HOH . N 5 HOH B 50 531 104 HOH HOH . N 5 HOH B 51 532 109 HOH HOH . N 5 HOH B 52 533 111 HOH HOH . N 5 HOH B 53 534 112 HOH HOH . N 5 HOH B 54 535 113 HOH HOH . N 5 HOH B 55 536 114 HOH HOH . N 5 HOH B 56 537 115 HOH HOH . N 5 HOH B 57 538 121 HOH HOH . N 5 HOH B 58 539 139 HOH HOH . N 5 HOH B 59 540 140 HOH HOH . N 5 HOH B 60 541 141 HOH HOH . N 5 HOH B 61 542 142 HOH HOH . N 5 HOH B 62 543 143 HOH HOH . N 5 HOH B 63 544 144 HOH HOH . N 5 HOH B 64 545 145 HOH HOH . N 5 HOH B 65 546 146 HOH HOH . N 5 HOH B 66 547 147 HOH HOH . N 5 HOH B 67 548 148 HOH HOH . N 5 HOH B 68 549 149 HOH HOH . N 5 HOH B 69 550 150 HOH HOH . N 5 HOH B 70 551 151 HOH HOH . N 5 HOH B 71 552 152 HOH HOH . N 5 HOH B 72 553 153 HOH HOH . N 5 HOH B 73 554 154 HOH HOH . N 5 HOH B 74 555 155 HOH HOH . N 5 HOH B 75 556 157 HOH HOH . N 5 HOH B 76 557 158 HOH HOH . N 5 HOH B 77 558 159 HOH HOH . N 5 HOH B 78 559 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 2 5.385 -2.765 39.992 1 123.16 ? C1 GOL 485 B 1 HETATM 2 O O1 GOL . . . K 2 5.392 -1.585 40.765 1 121.95 ? O1 GOL 485 B 1 HETATM 3 C C2 GOL . . . K 2 6.718 -3.487 40.145 1 123.55 ? C2 GOL 485 B 1 HETATM 4 O O2 GOL . . . K 2 6.498 -4.877 40.244 1 123.34 ? O2 GOL 485 B 1 HETATM 5 C C3 GOL . . . K 2 7.595 -3.195 38.933 1 123.41 ? C3 GOL 485 B 1 HETATM 6 O O3 GOL . . . K 2 8.828 -3.866 39.07 1 123.25 ? O3 GOL 485 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #